|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064997 ID=TCONS_00064997|Name=TCONS_00064997|organism=Clytia hemisphaerica|type=transcript|length=1688bpRun BLAST on NCBI transcript from alignment at scaffold_428:165938..214004+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064997 ID=TCONS_00064997|Name=TCONS_00064997|organism=Clytia hemisphaerica|type=transcript|length=48067bp|location=Sequence derived from alignment at scaffold_428:165938..214004+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064997 vs. Swiss-Prot (Human)
Match: ALDH2 (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2) HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0 Identity = 257/423 (60.76%), Postives = 324/423 (76.60%), Query Frame = 2
Query: 221 SPKR---SEXRGVLLNKLADLLQRDLKRIASIDTIDNGKPYRDAE-GDVEHSIDVLRYFAGWSDKVFGKTIPIAENEWFCFTKHQPVGVVGQIIPWNYPVSMMIWKLAPALACGCTVVLKPAEQTPLSALHVASLIKEAGFPAGVVNIVNGYGPTAGAAISEHMDINKVAFTGSVEIGKIVMQAAAKSNLKRVFLELGGKSPLIVFPDVDVDWAVLQAHEAIMENHGQNCCAGSRTFVHEDIYDQFVEKATACAAARVVGDPFNDITQQGPLINDTQHEKVLGLIQTGIKEGASLKYGGERVGNEGYFVQPTVFADVTDEMTIAKQEIFGPVQSILKFKDIDEVIARANATAYGLGSGVLTKDIDKAMKVVNGIEAGTVWVNCYNYTHPQCPFGGFKQSGHGRELGKYALKEYTEVKQVTMKL 1477
SP R + RG LLN+LADL++RD +A+++T+DNGKPY + D++ + LRY+AGW+DK GKTIPI + ++F +T+H+PVGV GQIIPWN+P+ M WKL PALA G VV+K AEQTPL+AL+VA+LIKEAGFP GVVNIV G+GPTAGAAI+ H D++KVAFTGS EIG+++ AA SNLKRV LELGGKSP I+ D D+DWAV QAH A+ N GQ CCAGSRTFV EDIYD+FVE++ A A +RVVG+PF+ T+QGP +++TQ +K+LG I TG +EGA L GG + GYF+QPTVF DV D MTIAK+EIFGPV ILKFK I+EV+ RAN + YGL + V TKD+DKA + ++AGTVWVNCY+ Q PFGG+K SG GRELG+Y L+ YTEVK VT+K+
Sbjct: 91 SPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPI-DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKV 512 HSP 2 Score: 116.316 bits (290), Expect = 1.715e-27 Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 3
Query: 3 LFINNEWCDSISGKTFPTINPATGKVICHLQEGDKADIDKAVEAARKAFAIKSPWRSMHVAQRGVLLNKLADLLQRD 233
+FINNEW D++S KTFPT+NP+TG+VIC + EGDK D+DKAV+AAR AF + SPWR M + RG LLN+LADL++RD
Sbjct: 39 IFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERD 115 The following BLAST results are available for this feature:
BLAST of TCONS_00064997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.