TCONS_00065001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065001
Unique NameTCONS_00065001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065001 ID=TCONS_00065001|Name=TCONS_00065001|organism=Clytia hemisphaerica|type=transcript|length=726bp
ACGACACACACGGGTGCTATTGGCTGCAGAAAAGACTCAAATTTGCATTT
CACCGATACACACTCTGACCAACTCTTGCTTGATCCATTTCCGAGTTCGA
ACNACTGGTATTTGCGTTTTCTCTTTTAGATCCATTTCCGAGTTCGAACT
TCATAAATAATGGCTGCTGAAACCAAAGTTGAATATACCAAGCTTTTCAT
CAACAACGAGTGGTGCGATTCGGCTAGTGGCAAAACATTTCCAACAATCA
ACCCTGCAAATAACCAAGAAATTTGTCAACTTCAGGAAGCCGATAAGGTT
GACGTTGATCTAGCTGTGAAAGCTGCAAGAGATGCTTTTGAATTTGGATC
AGAATGGCGCTCTATGGCAGCAGCTCAAAGAAGCGCTCTTATGGGCAAAT
TAGTGGAGCTAGTGCAAAGAGACTCTGACAAATTAGCTaggCTGATCACA
TTGGACATGGGTAAAACATTAAAAGCGGCGCAATTTGAAGCCATGTTTTC
CGCAGCCACTCTCGCTTATTATGCTGGGTGGCCCGATAAAGTGACCGGAA
AAACTCTCCAACCTGGTGCATCCGAGGACGCGTTTTTCGCGTACACACGA
CATGAACCTATCGGTGTTTGCGGTGCCATTATCCCTTGGAATTACCCGTT
AGCAATGATCGCATGGAAGATCGGACCAGCATTAGCCTGTGGGTGCACCA
TGGTCATGAAGGCTGCAGAACAATCN
Run BLAST on NCBI

transcript from alignment at scaffold_428:182719..189460+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065001 ID=TCONS_00065001|Name=TCONS_00065001|organism=Clytia hemisphaerica|type=transcript|length=6742bp|location=Sequence derived from alignment at scaffold_428:182719..189460+ (Clytia hemisphaerica)
ACGACACACACGGGTGCTATTGGCTGCAGAAAAGACTCAAATTTGCATTT
CACCGATACACACTCTGACCAACTCTTGCTTGGTAAGTCCTTATTATCAC
GGTTATCTGGCATCCAAATGCGGAacttttcatccgacacgctaaagctc
tgaaggttggaacaattttcaacatctggtcCGGGAAGGTCTAGATTACG
GAATTGTGCAAaaccgcgtcaaggattttgcagccgGAGGCCTGTACCca
agccctcgttttcggggatcgGTGGGTCCGGTTCAGATATTATCAGGTTT
ATGCGCAAGGGTAAatgaacccgactggggatgcggcacatcaaaggctg
actatcattcctctctgTTTGTTGGGAAATTGACCCTCTCCTTTAAAGCT
TTagtgtgggcggccgccaatccgccatcggaatttCAGATAGATAGAAT
GGATAGTTTAGTCAATTTGTGTGATGAAAGTAGGCTCAACCAATAAGACT
TCCATATCGCTTTGCACCTGTCGCTGAAAATTAGTTATTTTGATTTCTAT
GTAATTATTTCGTGAAAGCTTTTCAACGGATATTCATAACTGCCAATAAT
GCTCGTTTTGCGCGTAAGGTTTTACAGCCTAGATTATATTGTTCCTTTTT
CGTTTATAGAAACAGAATAAGGTAAACCGCAATTAAGACTAAGCAAACAT
ACATCTCATAGATTTTCAGTTATGGCCTCTACAGCCCTCGGGAAAATGTC
TGCCTTGCTCTTGTTCAAAGCCAGCAAGCTCCATCAGTCTTCCGAAGCCT
TCATGGTCTTAATTATGTGTATGTAATCATGTAACAATCCCCTTTCTAaa
gttttccttttattttagaTGATAATTAAGGAATTGAATTTACATCACAA
ATTTGAAGAAACCTGAAAAAGTTTTGTGGAGTTTATGAAGTAACatgtca
tttttcttttcttaagtACTTGCTCAGTTAAAGTTAATAGTGTTTTCTAG
AAGAAAGAATCATAGTTTGTTCAGGGTTCAAGAAGCCAGCCATTTTGTAT
ATTACAGTGTCGAAATAAGTAAACAACACAATTGTGCATCGTATTACTGT
TGCATTTTGATAATACAttacattacacgttttttataagaacaaactat
ataagaatataaggcttcgattgccaaaatgttaagaataagttaagaac
attttacggTTTTGCAGACTCAAagacacccgatttcttaggaaaatcta
caaaaaatactcaaaaaatgccgaaaataagaacatgttaataacaattt
taggcttaaaactcaaaaagttcgaaggcttcaaaaattttggatgttct
tatttaaaaaaacgtgtatttactTATATTCTCTGATTTCGCTCTCTACA
AAAAATCGACATCTTTCGATGTGTTGTACCCTCTGTGTTGCTGACTGGCA
TTTGCGTTTTCTCTTTTAGATCCATTTCCGAGTTCGAACNACTGGTATTT
GCGTTTTCTCTTTTAGATCCATTTCCGAGTTCGAACTTCATAAATAATGG
CTGCTGAAACCAAAGTTGAATATACCAAGGTAATATATTGATCATATCAC
CTTAAAAGGTTGGTTTGAGATTTTGTTTTGCCTATAGATTCTTTCCATTT
TAGCGAGCAAAGCTCCAAATATTTTTACCTTACTCTTTTTGAAAGTCGAG
ATATTTAATTTATAAGTTTTCGACTTTCagtaagaaaacaatagaatttt
gatgtaagaacccatttttaGAAAGGAGTTTTGCAGTTTTTTAATTAACA
TGCAAAAGATCTTAAACCATCTGATTACCCCTTAAAGGGTACCAGCATCT
GAATAAAGCAAGGATCTTATAATTGATCAGGGAACCCCAAAATTCGTTAT
TTGTGTTGGCTACCCTATCATTGATACACATTTTTTGGTCTTTGTGAAAA
Atcggatcattaattttttctgatttttttgcatgaaagtagggtaccat
cataggtaaaagatggctcaagcagattttcgcaaaaaaattttgttgac
tcaaaaaacgcatgtttagctataagaatcactattaacaagcatacatc
aatgttcttagtccaattactcaattttttatgagatagatgtttttttt
ttgctcatgagagcttacttttgaagaatatgtgtgtttagacaggaaat
tttggttgcttggcgtgtttttatagaaaaactggccaaatttgatattN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaatttgatat
ttttttataagcacattattaattacttaggtattagcttttctcgagat
tggctctttcattgtttatgattttttgcacaaagatgcataactataaa
ccctcgaatgtgacggagcctgatttttggaaaaaaatgttttttggcaa
atttgggccaaaaaacggctaaaaaacgggttttctggGACTTTgcgaaa
aattggatcattatttttttctaatcttttgcatgaaagtagggtaccat
cataggtaaaagattaCTCAAGcatgattttgcaaaaaaaaaattgttga
ctcaaaaacgcatgtttatctataagaatcactattaacaagcatatatc
aatgttcttagtcaaattactcaattttttttatgagatagatgtttttt
tctcatgagggcttacttctgaagaatatgtgtgtttagacgtgaaattt
tggttgcttggcgtgtttttatagaaaaactggccaaattcgatatattt
ttataagcacattattatcaattacttaggtattagcttttctcgagatt
ggctctttcattgtttatgattttttgcacaaagatgcataactaccggg
tgacccacgaaaaagttcagacgtttctcgacgtcttgaggccgaacaaa
tgtaccaaagtgcttggagtttagatatttagaaagcNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgtttttgaaaaaaatctgaaaaatctac
aaaagcgccaaattttataaaaactagtctttttttaaacaaaaattact
tttaaaggtgtatttattaattattaatgtcataaaactcgttaaataag
tcaatttgtaagtgattttctaattaattgcataaatttaatacctgttt
tttacgtgttttttacactttccgaaaagtgaattttgactttaaaagct
cataagtagagaacaagttggtcaaatttaaaaagtgataGCTCAAATTT
TAAGTTAGGATATCTACTTTCgaaatatcaaaactccaagcactttggga
catttgttcggcctcaagatgtagggaaacgtctgaactttttcgtgggt
cacccggtatataaacccttgaatgtgacggagctcgatttttggaaaaa
aaaacggccaaaaaaagagttttttggactttgtgaaatattggatcatt
gattttttgcatgaagtaggtaaaagatggctcgagcagatttttgtaaa
aaataatttttcagctcaaaaaacgcatgtttatctataagaatcactat
taataagcatacattaatgttcttagccaaattactaatTTTTTTGACGA
GATGGATGGTTTTTTCCTCACGAAGtattgaatatgaaagaatatttcaa
gagcatgaaattttggtttctaaatgtttttttcataagaaacaaacgac
taattttaatagatcgtcaatatttgtgttctgaatgattgtttaatggt
cacgtcacgtatatatcaattataaatatgttaaatgcacaaataggtag
gtccataaaagtatcacttgttacacttttttctactgtctttaggtgcg
aaaaaaaaaactgagatgttttagggtggtaaaacggacaagaAAATACC
TATCGTAGCAATAAGGAGGCTTGGATAACCACTGTGGCGTAGATGAAGTA
TCCTTGTAATATTTATTCTCTTTTCGAAGCTTTTCATCAACAACGAGTGG
TGCGATTCGGCTAGTGGCAAAACATTTCCAACAATCAACCCTGCAAATAA
CCAAGAAATTTGTCAACTTCAGGAAGCCGATAAGGTATGTGTTCTCTAAT
TGATTATCAATCTGTACACTAAGAATGTTTTCAATGCCATTCGTCATTTT
GAAGGAAGGTTTGAATATATTACGTTAAGGTTCTTTGAGTTACAATAAta
atagactggagtcgtttataatgcatgtaaatACAGTTATAGTCGTTTTA
TGATTATACGATTATTTTTACgaaatttagtttgtataaactaaagaTTG
TTTCCACCATTACCTTTTGCTTTTTTTAGGTTGACGTTGATCTAGCTGTG
AAAGCTGCAAGAGATGCTTTTGAATTTGGATCAGAATGGCGCTCTATGGC
AGCAGCTCAAAGAAGCGCTCTTATGGGCAAATTAGTGGAGCTAGTGCAAA
GAGACTCTGACAAATTAGCTGTAAGGGCATATCGTAAATTACTTGCGACC
ATTATTCAATCATTCAATCATcagggaaaaatgaaaataatagccgcatt
ctttttcaccgtccaacacATTCGATCACTGTATTAATTGCGAAATTAAG
AAATGATTCTTTGTCACGCTtgacttatttaaaaaaaagggcGACATGAG
TTGCGTTGCCATATCCAGACCTACCGGACCTTTAAAATCCTTGAATAATG
CAAGTGGTTCATAGATGATAAAAGATGGCTGCACTTTGGGGCATGTCAAA
TCATCCTacattttattttcttagtCTTGCATCCTGGACGAAGTATCCTC
CACCACCTAACgaattgatttctttttttcagaggCTGATCACATTGGAC
ATGGGTAAAACATTAAAAGCGGCGCAATTTGAAGCCATGTTTTCCGCAGC
CACTCTCGCTTATTATGCTGGGTGGCCCGATAAAGTGACCGGAAAAACTC
TCCAACCTGGTGCATCCGGTATGTATTCATGATATACGTCGATAAATTTA
CTTCTTTTTAACAGAATAAAGTAGATTTCGAATTCAAGTCAAGGAATATT
GTTTCCACTCTCATTTTATTTGTGAAATACCGGGAGAAATTTCCTCATCG
ACAAATAATtctaagtaagtctgcgaccgcagtcggagacTACTCGAAGG
cccctctttcgatagctgtctacccgaaggtaaggggagggcgccactct
ttctccctggattgctccagtttacccttgatccttaacttaattgctga
gcatcaagcagagaggcatcaagtaccattttgggaatcttttgTATGAC
CTGACTGGGGTttgaaccattgagtttaaagcccgaagggctagagttca
atctctaacctttctcaggcaagaaaaagtgaagccttaaaaaatgcgcc
gtgttttgacgacagattgattgattcctttgtttacaattgatattttt
ttcgaaatttagtggtaaattttagtttcaatctgtcatttgtgtaaaaa
ccaggcgagccgctcaaggccgNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcaggcgagccgctcaaggccgcgca
actttggtaggatttgttggcttcaaatcctaccaaggagattgacttct
agcccttcgggcttatacttcattggtttgAACCCACAACTTTGTGCACC
GTAGCCGGaagctctaccactgcactacggtcgcgtTTACAGTCGCACAT
TTTAAATAACAGGGTAATTACGCTTTTGATAAACTAATTTCTTTGGCCTT
TAAAGTATCATTCTCATTATAATACGTTTCTTTATTCTTACAGAGGACGC
GTTTTTCGCGTACACACGACATGAACCTATCGGTGTTTGCGGTGCCATTA
TCCCTGTAAGTTTTTTAtctaaaggttttatttttacataagtgtttccg
tttcatatcaggacagtgtcttgctattgttatattatgctgatataaac
aaacaaaaaatggttttctcttcttctttctaatcatcttgctccacatt
cgtgtcaattcaatgtgaaaaagcttgtgaattaaaattgattagtaagc
aaacgatatcactcttatttaaaaacaaaacttttaaattattcGTGGTG
AAATGATGTTCCCAAAACCTTTTCCAATTTTCCCTTAAAGGTTAACCAAT
TCCAGCCACAAAAGGAACATTTCTACTGCTTCAAACCTTGTAGCTATCGT
TACCATATGACACTGTTATTAGTTATTTTATAATAATTATTCCCGTTATT
AGTGGAATTACCCGTTAGCAATGATCGCATGGAAGATCGGACCAGCATTA
GCCTGTGGGTGCACCATGGTCATGAAGGCTGCAGAACAATCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040754XLOC_040754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065001-exon-scaffold_428-1491911889:182719..182800TCONS_00065001-exon-scaffold_428-1491911889:182719..182800Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1510915933:182719..182800TCONS_00065001-exon-scaffold_428-1510915933:182719..182800Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1575043694:182719..182800TCONS_00065001-exon-scaffold_428-1575043694:182719..182800Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1491911889:184188..184297TCONS_00065001-exon-scaffold_428-1491911889:184188..184297Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1510915933:184188..184297TCONS_00065001-exon-scaffold_428-1510915933:184188..184297Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1575043694:184188..184297TCONS_00065001-exon-scaffold_428-1575043694:184188..184297Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1491911889:186998..187102TCONS_00065001-exon-scaffold_428-1491911889:186998..187102Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1510915933:186998..187102TCONS_00065001-exon-scaffold_428-1510915933:186998..187102Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1575043694:186998..187102TCONS_00065001-exon-scaffold_428-1575043694:186998..187102Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1491911889:187348..187488TCONS_00065001-exon-scaffold_428-1491911889:187348..187488Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1510915933:187348..187488TCONS_00065001-exon-scaffold_428-1510915933:187348..187488Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1575043694:187348..187488TCONS_00065001-exon-scaffold_428-1575043694:187348..187488Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1491911889:187851..187986TCONS_00065001-exon-scaffold_428-1491911889:187851..187986Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1510915933:187851..187986TCONS_00065001-exon-scaffold_428-1510915933:187851..187986Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1575043694:187851..187986TCONS_00065001-exon-scaffold_428-1575043694:187851..187986Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1491911889:188912..188973TCONS_00065001-exon-scaffold_428-1491911889:188912..188973Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1510915933:188912..188973TCONS_00065001-exon-scaffold_428-1510915933:188912..188973Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1575043694:188912..188973TCONS_00065001-exon-scaffold_428-1575043694:188912..188973Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1491911889:189371..189460TCONS_00065001-exon-scaffold_428-1491911889:189371..189460Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1510915933:189371..189460TCONS_00065001-exon-scaffold_428-1510915933:189371..189460Clytia hemisphaericaexon
TCONS_00065001-exon-scaffold_428-1575043694:189371..189460TCONS_00065001-exon-scaffold_428-1575043694:189371..189460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:182719..189460 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.82148	0	1.34321	2.05689	1.14773e-09	0	5.06803	17.0239	14.8311	17.049	21.5296	23.3122	22.8227	23.6433	29.592	31.7523	17.5987	17.2186	42.3129	40.3711	39.3832	42.3051	46.8622	43.4405	3.19349e-09	3.77724	10.2369	21.5199	105.71	81.0261
Blast
[Close]
BLAST of TCONS_00065001 vs. Swiss-Prot (Human)
Match: AL1A1 (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 5.439e-67
Identity = 101/191 (52.88%), Postives = 134/191 (70.16%), Query Frame = 1 
Query:  157 IMAAETKVEYTKLFINNEWCDSASGKTFPTINPANNQEICQLQEADKVDVDLAVKAARDAFEFGSEWRSMAAAQRSALMGKLVELVQRDSDKLARLITLDMGKTLKAAQFEAMFSA-ATLAYYAGWPDKVTGKTLQPGASEDAFFAYTRHEPIGVCGAIIPWNYPLAMIAWKIGPALACGCTMVMKAAEQS 726
            ++  + K++YTK+FINNEW DS SGK FP  NPA  +E+CQ++E DK DVD AVKAAR AF+ GS WR+M A++R  L+ KL +L++RD   LA + +++ GK    A    +     TL Y AGW DK+ G+T+     +  FF YTRHEPIGVCG IIPWN+PL M+ WKIGPAL+CG T+V+K AEQ+
Sbjct:   11 VLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTI---PIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQT 198
The following BLAST results are available for this feature:
BLAST of TCONS_00065001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AL1A15.439e-6752.88Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
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