TCONS_00065023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065023
Unique NameTCONS_00065023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065023 ID=TCONS_00065023|Name=TCONS_00065023|organism=Clytia hemisphaerica|type=transcript|length=2941bp
GCAGTAATGGCTTTAGATATATCTAAAGTATCTAAATACAAAATTTGTAA
CCTAAAGCATGAAGGCATTGTACAAAACGACTCAAAATGGTTGATTTTGT
CAGGGGCTTTAAGTCCCCCGAATAACATCATAGTTTCCAGACGGCGCTCG
AAAGCCAGAAATGGTAACTTTTTACCTGGAGTTGCTAAAGACATTGCAAA
TATGGAAGATGCGCTTCGATTGAACAACTTTTATAAATTCAACACTGTTA
AAGATGACCGACTGACGAAGAATGAAGCAATAAGGAAAATCAAGGATCTC
CTTCAAGCATGTGGTAAAAAATTTCAACCTGTTATTTACTATACTGGCCA
CGGAGAGAAAGGTACTGGAAACTGGTGCTTCAGTGATGGAACTTTGGGAA
AAGATGAATTAGTGGCACTGTTTCCCCGAGTGTTTCCGAATGAAAAGCTA
ATGCCATTTCTCATTTGCGATTGCTGCTACAGTGGAAATTGGTACTCGAT
AATTCTTAACGTGgtattttctttcttatttttaattGATGAATCAACTT
ACATCACTCTTCTTAAACCTACCACATGTCTCCCTGCGTGTGGACCAGAT
TCAATAGCACTAGATTTTGCCGATCGTGGAGGAGAAATGACATTGTATCT
GACTGGGAAAGACGATTCTTGGATCAGATCAGGTTCATTGCGTCAACTTC
AAGGCTGAGAATCTTCTTTTGAGTCTCGATATTCGTTTGTTAAGATGTAT
ACTAAGTAAGCTACGAGTTTTTATcgaagggaagaaattttcgcagaaca
aataaaaagttctctcaaccgcgaaatttaattccgtgaaacttccgaat
tttgagctgtgaaccgcgaaatttatttccgcgaaaatttcttctcttaa
ggtagtCTCTTCGAGAAAATATTTGTACATCGGAGAAATGTTATAAGCTA
TATTATTAAGGGTATTTTATAATCAGGGGGGTAATCCACACTTTCGAGGG
GCAAGAATCTATTGTTCTGGGAGGGTCAAACTGGTTGCTTGGGCAACCAG
ACTGGGGAGCCAGACTTCTTATGTCCATGGATAGTACATGAAGAATGTTA
TGTCCTCTACCCCCTAATTTTTATCCTAAATAATGTCTTTACCTTCCAAA
CAACTGTACTTTAACATCAAATGCTCTCCATCAGGATAACTACACGGGTT
ATTGAACTCTTGGAAATTCACCTTTAAGTCACACCGTGCTCTTCCTTCAC
ACCGATGTAATATACTTCCTTTGACATCAGCTACACATCTCACAAAAACA
CGTGCTCTGCTACCACAAGCTTGACTCTGTTGTTGACTATCTCGTCCAAG
CAATGCACTTTCGACATGTATTCTTTGATTTGGTGGGCATTGAATGTGGT
ATGTCTTTGGTATGCATATTGGAATCAGATGTGATGACCCATATGTTGGG
GAAACTATgaataatttttaaacatgtttaCATAAGTCAGATAAATGAAA
TCTAGTTCAGTTGAATTCATTCTTCAAATGGATTGCCAACATATGTGGCA
GGTATATGTTAAAGATTAAAGGTCAAATTCACCGTGTTATGCAGGGGAAG
AGTAAGACCTTATCCAAAGATATATAGCTATTTCTAGCTCCTAATGTTTA
TCACCTTCATGGTTTTGCTGTATTGTCTTTGGGCTAGCTTACCGAAATGA
GTCAAAAACACCCTTtctcttaggaaaatggtcaaaaatactcacaaaat
ggtcaaaataagaacatgtttaggcttaaaactcaaaaagttaataacat
ccgaaggctttaaaaattttgggtgtgtttataaaaaaagcgtgtagtat
gAAGCTTACcttttaaaatgataaaaagcaCAATCCAGTAAACGATATAT
CTCGATTTTATTAAGATTAATGACAAATCCATAACCAAATTCAATTGAGC
TGGTAAAACTTTTCTTATATTACCGAATCAAATAAGACAAGGATTTCAGT
CCCCTCAATCAAGAAAAATTCCAACAAAATTTTATGTCTTGGTTAACATA
TGCGGTTCATCTTTAGTCCTTAGACTCTTTTTTATAGTGAATTCCAAGtt
cctttttcaaaacttttcttgAGACTATCTTTCAATTCTATTTGTACTTC
TTCTTAAATTATTTTGTGAAGGTGTTTTATTAGCAGTTTTTCTATTCGTT
ATTTGCTAGTCGTCTTTCGCTGGTCGACGCAATAAAAgcttttatttgtt
ttgtttctttgagATCTCTTTGGCGAAAGTTTATTTAACAACATATTCTT
ATTAACTACCAAAATCAATATAGAAGCTTGATTAGCGGCAAGAGAAAGAT
GATTAGAACAAATATTACAGACTCATATATCCCTTCCTTACACAATCGCT
AACATTAACGTTAAGACCTTTTCTAAATTCCAATAAGATTTTCTCTCCAT
TTTTAACCTTCTACTTTCCGCTATTCCTCGGAGGCCCCCCCCCCTACAAG
GGTTAGAAAATGTCGGGTATTTACGGACCGGGCCTCTCGAAAATGTAAAT
TCTTGcagaatcttttttataagaacatccaaattcttgaagccttcgga
tactcttaactttttgtttcAAGTCAGAAATTGTTCTTAATACACTAATT
CTCGCCatttttttgagttattttgTCCATtgttctaagaaattgggtgt
ttaaagccttaaaatgttcttaacttgttcttggccatcgaagccttatg
ttcttatatagtttgttcttatattaaaaacgTGTAGAGAGAGACAAAAT
CAGCGAAACTGACCTTTAGTAAGACTTTTCGACTTTTTGTAGCTTTTAAA
GAGATTTGGGAGACCTtttaaaaaagtgaccctttacgactgcacatacc
cagcacatgcacccttttttataagaatactgtactttggc
Run BLAST on NCBI

transcript from alignment at scaffold_428:443763..446703+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065023 ID=TCONS_00065023|Name=TCONS_00065023|organism=Clytia hemisphaerica|type=transcript|length=2941bp|location=Sequence derived from alignment at scaffold_428:443763..446703+ (Clytia hemisphaerica)
GCAGTAATGGCTTTAGATATATCTAAAGTATCTAAATACAAAATTTGTAA
CCTAAAGCATGAAGGCATTGTACAAAACGACTCAAAATGGTTGATTTTGT
CAGGGGCTTTAAGTCCCCCGAATAACATCATAGTTTCCAGACGGCGCTCG
AAAGCCAGAAATGGTAACTTTTTACCTGGAGTTGCTAAAGACATTGCAAA
TATGGAAGATGCGCTTCGATTGAACAACTTTTATAAATTCAACACTGTTA
AAGATGACCGACTGACGAAGAATGAAGCAATAAGGAAAATCAAGGATCTC
CTTCAAGCATGTGGTAAAAAATTTCAACCTGTTATTTACTATACTGGCCA
CGGAGAGAAAGGTACTGGAAACTGGTGCTTCAGTGATGGAACTTTGGGAA
AAGATGAATTAGTGGCACTGTTTCCCCGAGTGTTTCCGAATGAAAAGCTA
ATGCCATTTCTCATTTGCGATTGCTGCTACAGTGGAAATTGGTACTCGAT
AATTCTTAACGTGgtattttctttcttatttttaattGATGAATCAACTT
ACATCACTCTTCTTAAACCTACCACATGTCTCCCTGCGTGTGGACCAGAT
TCAATAGCACTAGATTTTGCCGATCGTGGAGGAGAAATGACATTGTATCT
GACTGGGAAAGACGATTCTTGGATCAGATCAGGTTCATTGCGTCAACTTC
AAGGCTGAGAATCTTCTTTTGAGTCTCGATATTCGTTTGTTAAGATGTAT
ACTAAGTAAGCTACGAGTTTTTATcgaagggaagaaattttcgcagaaca
aataaaaagttctctcaaccgcgaaatttaattccgtgaaacttccgaat
tttgagctgtgaaccgcgaaatttatttccgcgaaaatttcttctcttaa
ggtagtCTCTTCGAGAAAATATTTGTACATCGGAGAAATGTTATAAGCTA
TATTATTAAGGGTATTTTATAATCAGGGGGGTAATCCACACTTTCGAGGG
GCAAGAATCTATTGTTCTGGGAGGGTCAAACTGGTTGCTTGGGCAACCAG
ACTGGGGAGCCAGACTTCTTATGTCCATGGATAGTACATGAAGAATGTTA
TGTCCTCTACCCCCTAATTTTTATCCTAAATAATGTCTTTACCTTCCAAA
CAACTGTACTTTAACATCAAATGCTCTCCATCAGGATAACTACACGGGTT
ATTGAACTCTTGGAAATTCACCTTTAAGTCACACCGTGCTCTTCCTTCAC
ACCGATGTAATATACTTCCTTTGACATCAGCTACACATCTCACAAAAACA
CGTGCTCTGCTACCACAAGCTTGACTCTGTTGTTGACTATCTCGTCCAAG
CAATGCACTTTCGACATGTATTCTTTGATTTGGTGGGCATTGAATGTGGT
ATGTCTTTGGTATGCATATTGGAATCAGATGTGATGACCCATATGTTGGG
GAAACTATgaataatttttaaacatgtttaCATAAGTCAGATAAATGAAA
TCTAGTTCAGTTGAATTCATTCTTCAAATGGATTGCCAACATATGTGGCA
GGTATATGTTAAAGATTAAAGGTCAAATTCACCGTGTTATGCAGGGGAAG
AGTAAGACCTTATCCAAAGATATATAGCTATTTCTAGCTCCTAATGTTTA
TCACCTTCATGGTTTTGCTGTATTGTCTTTGGGCTAGCTTACCGAAATGA
GTCAAAAACACCCTTtctcttaggaaaatggtcaaaaatactcacaaaat
ggtcaaaataagaacatgtttaggcttaaaactcaaaaagttaataacat
ccgaaggctttaaaaattttgggtgtgtttataaaaaaagcgtgtagtat
gAAGCTTACcttttaaaatgataaaaagcaCAATCCAGTAAACGATATAT
CTCGATTTTATTAAGATTAATGACAAATCCATAACCAAATTCAATTGAGC
TGGTAAAACTTTTCTTATATTACCGAATCAAATAAGACAAGGATTTCAGT
CCCCTCAATCAAGAAAAATTCCAACAAAATTTTATGTCTTGGTTAACATA
TGCGGTTCATCTTTAGTCCTTAGACTCTTTTTTATAGTGAATTCCAAGtt
cctttttcaaaacttttcttgAGACTATCTTTCAATTCTATTTGTACTTC
TTCTTAAATTATTTTGTGAAGGTGTTTTATTAGCAGTTTTTCTATTCGTT
ATTTGCTAGTCGTCTTTCGCTGGTCGACGCAATAAAAgcttttatttgtt
ttgtttctttgagATCTCTTTGGCGAAAGTTTATTTAACAACATATTCTT
ATTAACTACCAAAATCAATATAGAAGCTTGATTAGCGGCAAGAGAAAGAT
GATTAGAACAAATATTACAGACTCATATATCCCTTCCTTACACAATCGCT
AACATTAACGTTAAGACCTTTTCTAAATTCCAATAAGATTTTCTCTCCAT
TTTTAACCTTCTACTTTCCGCTATTCCTCGGAGGCCCCCCCCCCTACAAG
GGTTAGAAAATGTCGGGTATTTACGGACCGGGCCTCTCGAAAATGTAAAT
TCTTGcagaatcttttttataagaacatccaaattcttgaagccttcgga
tactcttaactttttgtttcAAGTCAGAAATTGTTCTTAATACACTAATT
CTCGCCatttttttgagttattttgTCCATtgttctaagaaattgggtgt
ttaaagccttaaaatgttcttaacttgttcttggccatcgaagccttatg
ttcttatatagtttgttcttatattaaaaacgTGTAGAGAGAGACAAAAT
CAGCGAAACTGACCTTTAGTAAGACTTTTCGACTTTTTGTAGCTTTTAAA
GAGATTTGGGAGACCTtttaaaaaagtgaccctttacgactgcacatacc
cagcacatgcacccttttttataagaatactgtactttggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040764XLOC_040764Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065023-exon-scaffold_428-1491911889:443763..446703TCONS_00065023-exon-scaffold_428-1491911889:443763..446703Clytia hemisphaericaexon
TCONS_00065023-exon-scaffold_428-1510915933:443763..446703TCONS_00065023-exon-scaffold_428-1510915933:443763..446703Clytia hemisphaericaexon
TCONS_00065023-exon-scaffold_428-1575043694:443763..446703TCONS_00065023-exon-scaffold_428-1575043694:443763..446703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:443763..446703 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126865	0.269233	0.148186	0.229376	0.0465406	0.026567	0	0.264899	0	1.63971	0	0.338665	0	0	2.384	2.80001	0.591845	0.361685	0	0	0.0570939	0.0891993	0.195096	0	0.137448	0	0.872823	1.12311	3.48304	1.63022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top