TCONS_00065035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065035
Unique NameTCONS_00065035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065035 ID=TCONS_00065035|Name=TCONS_00065035|organism=Clytia hemisphaerica|type=transcript|length=763bp
ACAACTGTTCCTCATTACCATCCAAAAATATTGCTGACGTCATGCTtctc
ttaaaaaacaaacacaaacaTCGAAAAATACATTTCCTTTTGGACGAAGT
TCCGCAAGAGCTGTTCACAAAGACCTACTCGGAAACACTACGTAGCCATT
TGGAGAGTGAATTTCGAGAATCAGTGGTCGTGATTGCCCTCCAAAGTGTA
CAGAAATCTCGAAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAAGA
NCACAAAGACCTACTCGGAAACACTACGTAACCATTTAGAGAGTGAATTT
CGAGAATCAGTGGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAAA
GATAACCGAGGAAGGCAAGGTCACCAATTCACAAAAGATTGATTTAAACA
GCTCAAGTATGAAACTTTTCAAACTACCAACGACAATTAGGATGAGCAGT
TCCCTGAAcgaattgaaagaaattttggaagGTGAAATCGAAAGTTCACC
CTGCTCTTTAAACTTAGAAGTTCGATCGAAAGgaAACGCTTTGCTGACAA
AAGACGATGAATATAGCAAGGTCATAATCCAGGAAATCCAATCAAGTGGA
GATGGCGAAAATAGACCAGATGACTCTCAGTCAACAACAAAAGTCAAATT
TCAGGTTAACGAGGTATTTTTGTTAATGAGTGCACTGTTTACAATTAGGT
TACCATTGAAATTGGATAATGAAGCTATTATCTCTTTGTTGGAAccgttt
ttttttagaaatt
Run BLAST on NCBI

protein sequence of TCONS_00065035-protein

>TCONS_00065035-protein ID=TCONS_00065035-protein|Name=TCONS_00065035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MKLFKLPTTIRMSSSLNELKEILEGEIESSPCSLNLEVRSKGNALLTKDD
EYSKVIIQEIQSSGDGENRPDDSQSTTKVKFQVNEVFLLMSALFTIRLPL
KLDNEAIISLLEPFFFRN
Run BLAST on NCBI

transcript from alignment at scaffold_428:63017..63902-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065035 ID=TCONS_00065035|Name=TCONS_00065035|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at scaffold_428:63017..63902- (Clytia hemisphaerica)
ACAACTGTTCCTCATTACCATCCAAAAATATTGCTGACGTCATGCTTCTC
TTAAAAAACAAACACAAACATCGAAAAATACATTTCCTTTTGGACGAAGT
TCCGCAAGAGCTGTTCACAAAGACCTACTCGGAAACACTACGTAGCCATT
TGGAGAGTGAATTTCGAGAATCAGTGGTCGTGATTGCCCTCCAAAGTGTA
CAGAAATCTCGAAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAAGA
NCACAAAGACCTACTCGGAAACACTACGTAACCATTTAGAGAGTGAATTT
CGAGAATCAGTGGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAAA
GATAACCGAGGAAGGCAAGGTCACCAATTCACAAAAGATTGATTTAAACA
GCTCAAGTATGAAACTTTTCAAACTACCAACGACAATTAGGATGAGCAGT
TCCCTGAACGAATTGAAAGAAATTTTGGAAGGTGAAATCGAAAGTTCACC
CTGCTCTTTAAACTTAGAAGTTCGATCGAAAGGTATAACATACCATTTAT
GTAACATTCTTTTATAATCGTGTTCAATTGCAACGGTGTGCAAGTAAAAA
TGCTCATTTTTTTAATTACCGAAACATCTTTGACATTTTAATTTTGATCT
TTCAGGAAACGCTTTGCTGACAAAAGACGATGAATATAGCAAGGTCATAA
TCCAGGAAATCCAATCAAGTGGAGATGGCGAAAATAGACCAGATGACTCT
CAGTCAACAACAAAAGTCAAATTTCAGGTTAACGAGGTATTTTTGTTAAT
GAGTGCACTGTTTACAATTAGGTTACCATTGAAATTGGATAATGAAGCTA
TTATCTCTTTGTTGGAACCGTTTTTTTTTAGAAATT

Coding sequence (CDS) from alignment at scaffold_428:63017..63902-

>TCONS_00065035 ID=TCONS_00065035|Name=TCONS_00065035|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_428:63017..63902- (Clytia hemisphaerica)
GAAACGCTTTGCTGACAAAAGACGATGAATATAGCAAGGTCATAATCCAG
GAAATCCAATCAAGTGGAGATGGCGAAAATAGACCAGATGACTCTCAGTC
AACAACAAAAGTCAAATTTCAGGTTAACGAGGTATTTTTGTTAATGAGTG
CACTGTTTACAATTAGGTTACCATTGAAATTGGATAATGAAGCTATTATC
TCTTTGTTGGAACCGTTTTTTTTTAGAAATATGAAACTTTTCAAACTACC
AACGACAATTAGGATGAGCAGTTCCCTGAACGAATTGAAAGAAATTTTGG
AAGGTGAAATCGAAAGTTCACCCTGCTCTTTAAACTTAGAAGTTCGATCG
AAAGGAAACGCTTTGCTGACAAAAGACGATGAATATAGCAAGGTCATAAT
CCAGGAAATCCAATCAAGTGGAGATGGCGAAAATAGACCAGATGACTCTC
AGTCAACAACAAAAGTCAAATTTCAGGTTAACGAGGTATTTTTGTTAATG
AGTGCACTGTTTACAATTAGGTTACCATTGAAATTGGATAATGAAGCTAT
TATCTCTTTGTTGGAACCGTTTTTTTTTAGAAATATGAAACTTTTCAAAC
TACCAACGACAATTAGGATGAGCAGTTCCCTGAACGAATTGAAAGAAATT
TTGGAAGGTGAAATCGAAAGTTCACCCTGCTCTTTAAACTTAGAAGTTCG
ATCGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040772XLOC_040772Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065035-proteinTCONS_00065035-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065035-exon-scaffold_428-1575043694:63371..63902TCONS_00065035-exon-scaffold_428-1575043694:63371..63902Clytia hemisphaericaexon
TCONS_00065035-exon-scaffold_428-1575043694:63017..63247TCONS_00065035-exon-scaffold_428-1575043694:63017..63247Clytia hemisphaericaexon
TCONS_00065035-exon-scaffold_428-1510915933:63371..63902TCONS_00065035-exon-scaffold_428-1510915933:63371..63902Clytia hemisphaericaexon
TCONS_00065035-exon-scaffold_428-1510915933:63017..63247TCONS_00065035-exon-scaffold_428-1510915933:63017..63247Clytia hemisphaericaexon
TCONS_00065035-exon-scaffold_428-1491911889:63371..63902TCONS_00065035-exon-scaffold_428-1491911889:63371..63902Clytia hemisphaericaexon
TCONS_00065035-exon-scaffold_428-1491911889:63017..63247TCONS_00065035-exon-scaffold_428-1491911889:63017..63247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:63017..63902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.117429	0	0	0.0727537	0.377071	0.770012	1.46155	1.63633	3.16181	0.890476	6.44735	5.54049	2.83284	4.0106	2.60007	2.47805	8.03431	8.35391	0.810515	1.13521	1.24821	2.22363	2.22273	1.94813	7.78849	8.09528	8.70835	4.63469
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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