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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065036 ID=TCONS_00065036|Name=TCONS_00065036|organism=Clytia hemisphaerica|type=transcript|length=870bp
cttttttatagaTACGTGAGAACCTCAGAAGTGAACTAGGGATGACAGAC
CCATTAGAGCGAACCAAGCGAGCAGTACCAGCAAAACACGTTGCATTTGT
TACTTCAAAGATAAGAATGTCTAAATTTATAACAGACAACGCTTCAAAAG
ACAAGCCGACCAGCATGGATAACGCAGTTTTGGATGAAGATTTAATTTAT
TTCCAAGAAACCGCAGAATTAGCAAAGAAGACTTCAATGGGACGAATAAT
TAACAATACCAAAGATGAAACCGAGCATATCATTAGGGTGTGGATGACAC
CAAAGGAAAGGGAAGATGCAACGAAAGCCTCAGCGTTAACTAAGCCtGAA
CTTGTTGCACGGATTGAGAAGTTACTACCGAAATACCCAAGATTTGAACA
AGAATACAAATCAGACGTCAAGGGTAAAATCAAGGATTTACATGTAGACT
TCTTCCTAAAGCTTCAAGATTGTGATTGGGCTGAGTAGCTTCCCTAAAAT
GACTTGTGGTGCAGTGTGGGCGAATTTTTTCCTATAAACTTGTACTTTAT
ACATGCGACATTTTCTGTGAATAAAGAACATACCTTAGCCACGTATGGTT
CAAGCCCATTCTTGAACTCGACCCGATCAGTTGTGTTTTTTCGACGAACT
TTGTGTTTCAattgattttctgaaaattagaaATATGTACCACAATATCT
TACAAACAGCCATAACGTTGttataaatttgtaaataatacaCTAAAGAC
GAAAGCTTTTTGATACATTACATTTTGAACCCGATTCGTGTAATGTTTGT
TTAAAAGAAACCTCACGTAAACCGTTTCTtgttttttgcccaaaattgAA
GTCTTCCCCCGATAACGTCC Run BLAST on NCBI protein sequence of TCONS_00065036-protein >TCONS_00065036-protein ID=TCONS_00065036-protein|Name=TCONS_00065036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MTDPLERTKRAVPAKHVAFVTSKIRMSKFITDNASKDKPTSMDNAVLDED
LIYFQETAELAKKTSMGRIINNTKDETEHIIRVWMTPKEREDATKASALT
KPELVARIEKLLPKYPRFEQEYKSDVKGKIKDLHVDFFLKLQDCDWAE Run BLAST on NCBI transcript from alignment at scaffold_428:97465..98959- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065036 ID=TCONS_00065036|Name=TCONS_00065036|organism=Clytia hemisphaerica|type=transcript|length=1495bp|location=Sequence derived from alignment at scaffold_428:97465..98959- (Clytia hemisphaerica)
CTTTTTTATAGATACGTGAGAACCTCAGAAGTGAACTAGGGATGACAGAC
CCATTAGAGCGAACCAAGCGAGCAGTACCAGCAAAACACGTTGCATTTGT
TACTTCAAAGATAAGAATGTCTAAATTTATAACAGGTAAACAATACAAGC
GCCAAAAGTTCAGACCCATAAGAGCCTGATTTTTATACGAAACATAAATC
AAGCACCTTTATATTAGAAACTCTTCAATCTTAGGTCGTCTTAATTTTGA
AAGTGTCTTTCTATATCTCTGCTGTTGGTTATTTTTAGACAGATTTTATA
GAATTGGATATTCTGTTGTTGGGTATAAACTGGAATTTAAAAAAGTCACA
AATTGCTGACACGGAAGTGTTGCGTTAAGCGATTAACGCGTACCTTATCG
GGAAAACTACGTCGGGGAAAAGTGACGAAATTTTGGACAAGTGACGAATA
TTTTTTCAAGACGAAAATTTTCCCCAACGAAGTTTTCCCTGATAGGGTAT
ACCTATTACCAAAGAAATACTTCTATTTCTTTGCTATTACATACTTGTCT
AGACAACGCTTCAAAAGACAAGCCGACCAGCATGGATAACGCAGTTTTGG
ATGAAGATTTAATTTATTTCCAAGAAACCGCAGAATTAGCAAAGAAGACT
TCAATGGGACGAATAATTAACAATACCAAAGATGAAACCGAGCATATCAT
TAGGGTGTGGATGACACCAAAGGAAAGGGAAGATGCAACGAAAGCCTCAG
CGTTAACTAAGCCGTAAGTCATGTTTGTTATTTCTTTTTAAACTGTAACT
TTAACGTGTCATAAATTACCCAATAATCCAGTTATGTCTCTTTAAATGCC
CCCTATCTGACATTTCTATGACATTTTGNTAATTTTAACGTGTCATAAAT
TACCCAATAATCCAGTTATATCACTTTAAATGCTCCCTATCTGACATTTC
TATGACATTTTCATTTTATAGTGAACTTGTTGCACGGATTGAGAAGTTAC
TACCGAAATACCCAAGATTTGAACAAGAATACAAATCAGACGTCAAGGGT
AAAATCAAGGATTTACATGTAGACTTCTTCCTAAAGCTTCAAGATTGTGA
TTGGGCTGAGTAGCTTCCCTAAAATGACTTGTGGTGCAGTGTGGGCGAAT
TTTTTCCTATAAACTTGTACTTTATACATGCGACATTTTCTGTGAATAAA
GAACATACCTTAGCCACGTATGGTTCAAGCCCATTCTTGAACTCGACCCG
ATCAGTTGTGTTTTTTCGACGAACTTTGTGTTTCAATTGATTTTCTGAAA
ATTAGAAATATGTACCACAATATCTTACAAACAGCCATAACGTTGTTATA
AATTTGTAAATAATACACTAAAGACGAAAGCTTTTTGATACATTACATTT
TGAACCCGATTCGTGTAATGTTTGTTTAAAAGAAACCTCACGTAAACCGT
TTCTTGTTTTTTGCCCAAAATTGAAGTCTTCCCCCGATAACGTCC Coding sequence (CDS) from alignment at scaffold_428:97465..98959- >TCONS_00065036 ID=TCONS_00065036|Name=TCONS_00065036|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_428:97465..98959- (Clytia hemisphaerica)
TGAACTTGTTGCACGGATTGAGAAGTTACTACCGAAATACCCAAGATTTG
AACAAGAATACAAATCAGACGTCAAGGGTAAAATCAAGGATTTACATGTA
GACTTCTTCCTAAAGCTTCAAGATTGTGATTGGGCTGAGTAGACAACGCT
TCAAAAGACAAGCCGACCAGCATGGATAACGCAGTTTTGGATGAAGATTT
AATTTATTTCCAAGAAACCGCAGAATTAGCAAAGAAGACTTCAATGGGAC
GAATAATTAACAATACCAAAGATGAAACCGAGCATATCATTAGGGTGTGG
ATGACACCAAAGGAAAGGGAAGATGCAACGAAAGCCTCAGCGTTAACTAA
GCCATGACAGACCCATTAGAGCGAACCAAGCGAGCAGTACCAGCAAAACA
CGTTGCATTTGTTACTTCAAAGATAAGAATGTCTAAATTTATAACAGTGA
ACTTGTTGCACGGATTGAGAAGTTACTACCGAAATACCCAAGATTTGAAC
AAGAATACAAATCAGACGTCAAGGGTAAAATCAAGGATTTACATGTAGAC
TTCTTCCTAAAGCTTCAAGATTGTGATTGGGCTGAGTAGACAACGCTTCA
AAAGACAAGCCGACCAGCATGGATAACGCAGTTTTGGATGAAGATTTAAT
TTATTTCCAAGAAACCGCAGAATTAGCAAAGAAGACTTCAATGGGACGAA
TAATTAACAATACCAAAGATGAAACCGAGCATATCATTAGGGTGTGGATG
ACACCAAAGGAAAGGGAAGATGCAACGAAAGCCTCAGCGTTAACTAAGCC
ATGACAGACCCATTAGAGCGAACCAAGCGAGCAGTACCAGCAAAACACGT
TGCATTTGTTACTTCAAAGATAAGAATGTCTAAATTTATAACAGTGAACT
TGTTGCACGGATTGAGAAGTTACTACCGAAATACCCAAGATTTGAACAAG
AATACAAATCAGACGTCAAGGGTAAAATCAAGGATTTACATGTAGACTTC
TTCCTAAAGCTTCAAGATTGTGATTGGGCTGAGTAGACAACGCTTCAAAA
GACAAGCCGACCAGCATGGATAACGCAGTTTTGGATGAAGATTTAATTTA
TTTCCAAGAAACCGCAGAATTAGCAAAGAAGACTTCAATGGGACGAATAA
TTAACAATACCAAAGATGAAACCGAGCATATCATTAGGGTGTGGATGACA
CCAAAGGAAAGGGAAGATGCAACGAAAGCCTCAGCGTTAACTAAGCCATG
ACAGACCCATTAGAGCGAACCAAGCGAGCAGTACCAGCAAAACACGTTGC
ATTTGTTACTTCAAAGATAAGAATGTCTAAATTTATAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065036-exon-scaffold_428-1575043694:98825..98959 | TCONS_00065036-exon-scaffold_428-1575043694:98825..98959 | Clytia hemisphaerica | exon |
| TCONS_00065036-exon-scaffold_428-1575043694:98197..98407 | TCONS_00065036-exon-scaffold_428-1575043694:98197..98407 | Clytia hemisphaerica | exon |
| TCONS_00065036-exon-scaffold_428-1575043694:97465..97988 | TCONS_00065036-exon-scaffold_428-1575043694:97465..97988 | Clytia hemisphaerica | exon |
| TCONS_00065036-exon-scaffold_428-1510915933:98825..98959 | TCONS_00065036-exon-scaffold_428-1510915933:98825..98959 | Clytia hemisphaerica | exon |
| TCONS_00065036-exon-scaffold_428-1510915933:98197..98407 | TCONS_00065036-exon-scaffold_428-1510915933:98197..98407 | Clytia hemisphaerica | exon |
| TCONS_00065036-exon-scaffold_428-1510915933:97465..97988 | TCONS_00065036-exon-scaffold_428-1510915933:97465..97988 | Clytia hemisphaerica | exon |
| TCONS_00065036-exon-scaffold_428-1491911889:98825..98959 | TCONS_00065036-exon-scaffold_428-1491911889:98825..98959 | Clytia hemisphaerica | exon |
| TCONS_00065036-exon-scaffold_428-1491911889:98197..98407 | TCONS_00065036-exon-scaffold_428-1491911889:98197..98407 | Clytia hemisphaerica | exon |
| TCONS_00065036-exon-scaffold_428-1491911889:97465..97988 | TCONS_00065036-exon-scaffold_428-1491911889:97465..97988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:97465..98959 - |
Blast
The following BLAST results are available for this feature:
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