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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065056 ID=TCONS_00065056|Name=TCONS_00065056|organism=Clytia hemisphaerica|type=transcript|length=2024bp
AAAACAAACTCTGACTTATCAATCTACCATTAAAGCAGGGTGCTGACAAA
CATTGATCAACAAGATTGATTGTGGATGTCATTTTGAATCTAAtcaacct
ctttaaatactgcCTTGTAACCTGTTGTAACAGCCATAAGCTCCTAACCT
GGTAACAGACAGCTGTTTGTAATTATTTTACGTGCacagtaaacctctga
aggtgctttaaaggaaaatagtcctcccgtggAAAACTCttcaatcacgc
aactttgttgtcgttcctaGTCCTTTAAGatgaacgcggtccttacgtgt
tacgattttgagattgcatatttgtcagattgttatgttttcacacatcc
ctttagaacttcagcgtggtgtgcagaaaacattcacaatctgattcAGG
TTATAATCTCTCCAataccagacggtgtcaatcgaacaacttcaaacTAA
AATCGCAATCTAACCAATCGCACATAATcaaacgcgatcgaataattgtg
attcgattgttcgaataattgtgattcgattgttcgaataattgtgattc
gattgtcggacacaatcgaatctcaatcaaacggccgattcctgggtaat
attcaattgtgtCCGACTGTGTTCGATTGGTTCCATTACATTTGATTTGA
TTCAATAAGTTGATTGCGATCAAATTAAATTGGGTTCACTCCTTTACATA
GTGTGGCGTGGGCGTCCGAGCGTTTTAAGTACCGCACGAGGGCAAATAAA
ATTGAAtacaattaaatcaatcaaacgTCATTGAATATAATCGAAGCAAT
TGAATGGCAAAtcttgggtaatattcgattgcgttcgacaatcgaattgc
aattatttgattgtgttcgattgcgatCAATTGATTCGGTGTTCGATTCG
TtcaattgacaccgtctggtcaaTACAATTAATTTTTTCCACTCGGTGAT
TACGATAATCAAAAGGTAATCAAGcttattctaaaattttgaatggaaaT
TAAGATAACCAGAGAtaaggtttgtttttttcatcaaTTGGCTATATCGA
TTGTGGTCGTCAATCGATAGACGAgtttaaatgttttgattttgtacagG
CGGCCTGATGTGGGTGGGTGATTGCGGTTGATTATTAGAGGCAAGGAGAC
TTATATGATTTATACGGAGGCAAGTGAATATGaatcaaatttttgataag
TACCAATCATATCTCTTCGAAATTTATGAATGGTAAggtggcaatcacaa
atatcttcgttttgcgtcgcccgaccgcctgtcgaaaattgagtagaatt
gagtcggtaaatttgtcggacctTTTCTGtcctttgttcaaaaattttta
ttatggCCGATTTTTTGTGGGCAATTTCTAGTGCATTAGCGACATTTTGA
cttttatcattacatgcgccatttagggtcggaggtcacagtgttcaaag
gtcataatttgaaaccaccaACAACACGCGTTTGTTTTGGCTGATGGCTG
GCTGACAGTTTCCTTTAAGAAAACCGGAAAATTTTTACAACCGGCCGACc
gactttttagacccaacaaggacgcgaaatgaagatattatCGATTGCCG
CCTAAGGCTATATACCTCTGAGAAAACATACAAAAACTTCTTCTCAAAAG
TCCTACTAGAGACTTCGTCAAAACAGAAAGTTTACTTGCCTCTTGCTTAT
GGTCATTTTCCCTCCAAGAAATCGGGTGGACCAAGCAAATCACTCAAAAG
TTTTAAGTTTTCTGcctaagaagaaaaatcaaaagccttggaaaatatca
aaatgttgatgaaaaaatattttgtggcAGACCGGGTAATTATTGTATAT
AGAGGACCATTCAAAAAATACGTACACTCTGATGGGGAGGTGGAGGGTAC
TACCAAAAGCATACGAGAGGGGAGGGGAGGCCAGGTAGAAAGGTACGTAc
gctttgacatttttcaatatAACGAAATTTCAGTCAAAGTTTGGTTAGAT
CTTCTGATTATATCATCAACAAAG Run BLAST on NCBI transcript from alignment at scaffold_428:419..2442 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065056 ID=TCONS_00065056|Name=TCONS_00065056|organism=Clytia hemisphaerica|type=transcript|length=2024bp|location=Sequence derived from alignment at scaffold_428:419..2442 (Clytia hemisphaerica)
CTTTGTTGATGATATAATCAGAAGATCTAACCAAACTTTGACTGAAATTT
CGTTatattgaaaaatgtcaaagcgTACGTACCTTTCTACCTGGCCTCCC
CTCCCCTCTCGTATGCTTTTGGTAGTACCCTCCACCTCCCCATCAGAGTG
TACGTATTTTTTGAATGGTCCTCTATATACAATAATTACCCGGTCTgcca
caaaatattttttcatcaacattttgatattttccaaggcttttgatttt
tcttcttaggCAGAAAACTTAAAACTTTTGAGTGATTTGCTTGGTCCACC
CGATTTCTTGGAGGGAAAATGACCATAAGCAAGAGGCAAGTAAACTTTCT
GTTTTGACGAAGTCTCTAGTAGGACTTTTGAGAAGAAGTTTTTGTATGTT
TTCTCAGAGGTATATAGCCTTAGGCGGCAATCGataatatcttcatttcg
cgtccttgttgggtctaaaaagtcgGTCGGCCGGTTGTAAAAATTTTCCG
GTTTTCTTAAAGGAAACTGTCAGCCAGCCATCAGCCAAAACAAACGCGTG
TTGTtggtggtttcaaattatgacctttgaacactgtgacctccgaccct
aaatggcgcatgtaatgataaaagTCAAAATGTCGCTAATGCACTAGAAA
TTGCCCACAAAAAATCGGccataataaaaatttttgaacaaaggaCAGAA
Aaggtccgacaaatttaccgactcaattctactcaattttcgacaggcgg
tcgggcgacgcaaaacgaagatatttgtgattgccaccTTACCATTCATA
AATTTCGAAGAGATATGATTGGTActtatcaaaaatttgattCATATTCA
CTTGCCTCCGTATAAATCATATAAGTCTCCTTGCCTCTAATAATCAACCG
CAATCACCCACCCACATCAGGCCGCctgtacaaaatcaaaacatttaaac
TCGTCTATCGATTGACGACCACAATCGATATAGCCAAttgatgaaaaaaa
caaaccttaTCTCTGGTTATCTTAAtttccattcaaaattttagaataag
CTTGATTACCTTTTGATTATCGTAATCACCGAGTGGAAAAAATTAATTGT
AttgaccagacggtgtcaattgaACGAATCGAACACCGAATCAATTGatc
gcaatcgaacacaatcaaataattgcaattcgattgtcgaacgcaatcga
atattacccaagaTTTGCCATTCAATTGCTTCGATTATATTCAATGAcgt
ttgattgatttaattgtaTTCAATTTTATTTGCCCTCGTGCGGTACTTAA
AACGCTCGGACGCCCACGCCACACTATGTAAAGGAGTGAACCCAATTTAA
TTTGATCGCAATCAACTTATTGAATCAAATCAAATGTAATGGAACCAATC
GAACACAGTCGGacacaattgaatattacccaggaatcggccgtttgatt
gagattcgattgtgtccgacaatcgaatcacaattattcgaacaatcgaa
tcacaattattcgaacaatcgaatcacaattattcgatcgcgtttgATTA
TGTGCGATTGGTTAGATTGCGATTTTAgtttgaagttgttcgattgacac
cgtctggtatTGGAGAGATTATAACCTgaatcagattgtgaatgttttct
gcacaccacgctgaagttctaaagggatgtgtgaaaacataacaatctga
caaatatgcaatctcaaaatcgtaacacgtaaggaccgcgttcatCTTAA
AGGACtaggaacgacaacaaagttgcgtgattgaaGAGTTTTccacggga
ggactattttcctttaaagcaccttcagaggtttactgtGCACGTAAAAT
AATTACAAACAGCTGTCTGTTACCAGGTTAGGAGCTTATGGCTGTTACAA
CAGGTTACAAGgcagtatttaaagaggttgaTTAGATTCAAAATGACATC
CACAATCAATCTTGTTGATCAATGTTTGTCAGCACCCTGCTTTAATGGTA
GATTGATAAGTCAGAGTTTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065056-exon-scaffold_428-1491911889:419..2442 | TCONS_00065056-exon-scaffold_428-1491911889:419..2442 | Clytia hemisphaerica | exon |
| TCONS_00065056-exon-scaffold_428-1510915933:419..2442 | TCONS_00065056-exon-scaffold_428-1510915933:419..2442 | Clytia hemisphaerica | exon |
| TCONS_00065056-exon-scaffold_428-1575043694:419..2442 | TCONS_00065056-exon-scaffold_428-1575043694:419..2442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:419..2442 . |
Blast
The following BLAST results are available for this feature:
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