TCONS_00065064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065064
Unique NameTCONS_00065064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065064 ID=TCONS_00065064|Name=TCONS_00065064|organism=Clytia hemisphaerica|type=transcript|length=723bp
TGCTATTCATCTAAGGTTTAACTTCGAAGCCTAGTTGATGTGCAACCTAA
gaatctaaagaaaattcataTATTAACAGATATTAACCTCATTTTTTCTA
CCTTACCTTGTTCCTCAACCATTGAATAATGGATCCCACTATTTTTATCA
CACAATTGTCCCTTTGTATGTAGGTTatctgaaagcttaaaatcaaccCC
TTTCTCAGGTACTTGTGTCTCTCAAATTAATATACCAGTTAACCTCACTT
TTTataccaaaatataatttttcatttagttGTTTTTGATAATAGGCTAC
TGTTTGTCTGATACCCAAAATTAGACTGAAATATCATTGTCAAACTCACA
AATTGGATGTTTTCCTGAAATAACCTCAAATTTGACACCCTACTTGAAAT
ATTAACCTCGTTTCCCCAGCCTTACTTTGTGCCCAATCATTAAATAGTAA
AACCCAATCATTTATTTTGCTTTAACCTCacatttcataccaattttaGC
CTATCTTTCAAGGGCCATTACGTTAACCTCAGAGCCAGTTAACCTCATAT
TCTTAACCCTACTTTGACCAATAATATCTCTTTAAAATTCAACACTTAAC
CTCTATAATGTATATATCATTGTGATCCTGAATAAATTTTGAGTTAGTAT
GTAAAGTagcaaataaaaataagttaacCTCATTTATTCATCCTTtgtta
aagtcaaaaaagttcttttgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_428:134388..135110

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065064 ID=TCONS_00065064|Name=TCONS_00065064|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at scaffold_428:134388..135110 (Clytia hemisphaerica)
tttcaaaagaacttttttgactttaacaAAGGATGAATAAATGAGgttaa
cttatttttatttgctACTTTACATACTAACTCAAAATTTATTCAGGATC
ACAATGATATATACATTATAGAGGTTAAGTGTTGAATTTTAAAGAGATAT
TATTGGTCAAAGTAGGGTTAAGAATATGAGGTTAACTGGCTCTGAGGTTA
ACGTAATGGCCCTTGAAAGATAGGCtaaaattggtatgaaatgtGAGGTT
AAAGCAAAATAAATGATTGGGTTTTACTATTTAATGATTGGGCACAAAGT
AAGGCTGGGGAAACGAGGTTAATATTTCAAGTAGGGTGTCAAATTTGAGG
TTATTTCAGGAAAACATCCAATTTGTGAGTTTGACAATGATATTTCAGTC
TAATTTTGGGTATCAGACAAACAGTAGCCTATTATCAAAAACaactaaat
gaaaaattatattttggtatAAAAAGTGAGGTTAACTGGTATATTAATTT
GAGAGACACAAGTACCTGAGAAAGGggttgattttaagctttcagatAAC
CTACATACAAAGGGACAATTGTGTGATAAAAATAGTGGGATCCATTATTC
AATGGTTGAGGAACAAGGTAAGGTAGAAAAAATGAGGTTAATATCTGTTA
ATAtatgaattttctttagattcTTAGGTTGCACATCAACTAGGCTTCGA
AGTTAAACCTTAGATGAATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040793XLOC_040793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065064-exon-scaffold_428-1491911889:134388..135110TCONS_00065064-exon-scaffold_428-1491911889:134388..135110Clytia hemisphaericaexon
TCONS_00065064-exon-scaffold_428-1510915933:134388..135110TCONS_00065064-exon-scaffold_428-1510915933:134388..135110Clytia hemisphaericaexon
TCONS_00065064-exon-scaffold_428-1575043694:134388..135110TCONS_00065064-exon-scaffold_428-1575043694:134388..135110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:134388..135110 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.611161	0.782763	2.35758	1.55503	0.865818	0.477823	1.17639	1.21741	0.291737	0.370579	0.699294	0.40398	0.392359	0.333709	0.438444	0.242593	0	0.268216	0.390786	0.469175	0.863367	0.452891	0.327803	0.477113	0.815174	1.2722	0.510333	0.505033	0.260892	0.312214
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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