TCONS_00065080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065080
Unique NameTCONS_00065080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065080 ID=TCONS_00065080|Name=TCONS_00065080|organism=Clytia hemisphaerica|type=transcript|length=950bp
AGAAGGATCGTGATCAGTACATAATAAACAATCGGCATTGATTAGATGGT
TTACATAGCCTGTTAACAAGGCTGTAAAGTTATGGACGGCTCATGTTGCA
GACCAGAGGCAAGTTAAAATGCATATTAAGTATTTCATATCGTTTTCGAT
ATATTTAGGTATGGTATCTAAATAGTTTATAAaacaatattttattttct
attataCTGTTATGTTCTTTTGTTACTATATTGTTCCTAGGGTGCGTATG
TTTTTATCGAGTCCTTATCACAAGTAGAGCATCAGTTTTACAGATAGCTG
ATCAAATCTTGGGAAGAAGGCAAGACTTTTGAAGTTATCAGGAAATCACT
TTTGACACCATAATTGGCTAGTAAAAAGATCCTGCTTGGAGTTTCTGTAA
AGGAGGCACTACTAATAACACGTTTTACGAAGTTACCAATGGCTAGAATT
GATAGCATTATGCAGCTTTGGGGATCCAATCATTCCGTTTTCCCTTTCAA
TAATGGGCCCGTCTATGGGTAGGCTGGGCTGGCTCCCCGTGGGCGCGGGG
CGTGTCCCCAGAGACCTCCTCCACCACAGGTTCTGTGGGAGGGCTGGGCT
GGCTTCCCGTCATTGCGGGGTGTGTCCTCATTGACCTCCTCCGTGGCCGG
GTCTGGGGTTAGGCAGGGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTCA
GAGACCTCCTCCGTGGCCGGGTCTGGGGTTAGGCAGGGCTGGCTTCCCGT
CATTGCGGGGTGTGTCCTCAGAGACCTCCTCCGTGGCCGGGTCCGTGGTA
GGGCGGGGCCACTGGGGTTAGGGCGTTATACGTGACATCTTTCTCACAGT
GTCTGGGTCCTCCATAATGGGTGCTTCCCCTTGCAGGTATCCAAGCCTCC
TCCATATTTATGGGTATTAGTTTAATGGCAAAAGGCAAGTTTACATATAT
Run BLAST on NCBI

transcript from alignment at scaffold_429:26522..31913-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065080 ID=TCONS_00065080|Name=TCONS_00065080|organism=Clytia hemisphaerica|type=transcript|length=5392bp|location=Sequence derived from alignment at scaffold_429:26522..31913- (Clytia hemisphaerica)
AGAAGGATCGTGATCAGTACATAATAAACAATCGGCATTGATTAGATGGT
TTACATAGCTTGTTAACAAGGCTGTAAAGTTATGGACGGCTCATGTTGCA
GACCAGACGCAAGTTAAAATGCATATTAAGTATTTCATATCGTTTTCGAT
ATATTTAGGTATAATATCTAAATAGTTTATAAAATAATATTTTATTTTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
GGCGAGACCAATTTAATTTGTTGTTCTACGGGCCCGACCGACCCTATTTT
CGCTAAAATCAAAAAAATAATAATATTAATTTCCACTACAATATTATACT
ACTATATTTTACACACTAGTTATTTGTAAGAATTAAATTTGAATGAAGCT
CAAAATTTGAAGCTCAAAATTTTAATTCAAGAAATTGAAAAATTTAGAAA
ATCAAGCATTCCATACACTAAGATTTTATCATGATCTTCATCGAAGATAA
AAAAATTTTTGAAACAGATATTTTTTGGAAAATATTTTCGGTACTTTAAC
AACCCTGATAAATAAAAAATTGATTTTTATTTTACCGACCGGCCGACCCA
TATCTTGCTAACGATCTGCCCGTAGAACAACAAATTAAATTGGTCTCGCC
CTACACAGAAACTTATTTTATCACTTTGGATTTAACACAGGTTAAATCGT
GGTTTAACTTTTATTTGATAAGCGCCACAGTATTGGAATGGCTGGGTGGC
CGCCCTCTGCCAACTGAGTCTACTTTGCCAATAACCACGTGACATCATGT
TCATAATAGCTATCGCAACTCCCTGTTCAAGAGGCCCCCCCAGCGGACCC
AAAATTCACGCCATCACGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCGCAACCATGGTTTGCGCTGACGGGGAAAATTTTCA
ATTTTCGACCCTCTCATAGCATTCGACTTTATTATTTTGAAGACTAGCTA
GCAACTGCTAAAAACATTCGGAAGTTACAAGGATAAATGGCAGATGAATA
GAACTGTTTGCACCGTTTATTTTATGTTTTAAAATGAGATCTATAGGAGA
CCCTATAGGAGGCCCACCATAGTTGGGGCCGACCAAGAAAATTTTGAATT
TTAAACCCTCTAAATTGGCTAAAATGGACATAGAAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCTTCATTTTCACG
CCATCACGCCGTTTTTTTCAAAATTTCACGCCATCACGCCACGAAAAACC
CTCTATCACGCCATCACGCCAACCGCTGGGGGGGCCTCGTTCAAGTCGAC
GCTCTAACTGAAAGCTGACAGGATGAAATATNCCGCCCTCTGCCAACTGA
GTCTACTTTGCTAATAACCACGTGACGTCATGTTCATAATGGCTATCGCA
ACTCCCTGTTCAAGACGACGCTCTAACTGAAAGCTGACAGGATGAAATAT
TTTTATTGAATCTTCCAATATAGAGATAAAGGGGTTAATTCATAACCATC
ACTTTTACCGAACGCAAAGAGATTTTGAGGATGGACATTCATAGATACAA
AAGTAGTTTGTGCAATGAAGCGTACAATTTTTGTTGCATACGAACGACCA
GATTCTTTGAAAAACTTTATGAAACGAACCATTAAGATTTTATCAAGAGC
ATAGCAAAATCTGCAACTAATATCTGGCTTGGGTGATTGTGGCTGTTTTT
TTGGGGATGTTTGCCAAGGTGATTGTCGGTGGTTTTGGGGATGTTGGCCA
AGGTGATTGTCGGTGGTTTTGGGGATGTTGGCCAAGGTAATTGTCGGTGG
TTTTGGGGATGCTGGCCAAAGTGATTGTCGGTGGTTTTGGGGATGTTGGC
CAAGGTGATTGTCGCTGGTCGTTTGGGGTCATTGAGGCTGTAATAGATTA
TTGCATTGTCTTTGGCTATCATAAGGCTCGGTTGCTTGGAGCGAGGTGGA
AGAAGAAGGACAAAAAACTTGCAATATGATTGTCANGTTTAGGGATTGTC
GCTGGACATTTGGGGTCATTGAGGCTGTAATAGCTTATTGTATTGTCTTT
GGCTATCATAAGGCTCGGTTGCTTGCAGCGAGGTGGAAGAAGAAGGACAA
AAAACTTGCAATATGATTGTCATGAACTCTACAAGATTTTGATTGTTTGC
GTATTGGATTGAATTTGGTTTAACAATTTTTCTTTTGGAATTAGGTTTTC
GGTGTTGCGCAAGGGGCTTGCAAAAACAGGAAAATTTTTTATTATCATTT
TGGCCTGTTGAAGATGAAATCAAAACAAAAAGTTAAAACACCATAAAAAC
ACAAATTTTTCTCTACGAAACGTAACATGTCCCTAAGATCAATTATTTCA
AAATTCTCTCTTTCTTGCTTTTAAAATTTCTTAGCTCAAACAAAAGGCCC
ATTCACTTAATCTAGGTTACTCTTCTAAGGCACAGCTGCTCTCTTTATAA
GATTTGATATTTGCAGTGAATTGTGAATTCTTTGTCTTGGACAGCGCTTA
CGCTTATAAAACACGATAAAGAAGAGAACAAAATTCTTTTACTTTTTTAC
TTCAGATAGTTTACAAACAAATTTTTCAACTTTTTTATAAGCATAAACTT
ATCCTCAACTGGATGTAATAATCAAACACAAAACCTGAATATTTAATTTA
TTTCACGTTAACAGAAATCTGCGACCCGGTTAATTGAAAAATTTTTACAG
TACAGTGATCCTTCTTGGCTTGAAGGCTGGTGTCAACCTAGGCAAGGTTG
TACACAGACAGTGCACGTCAAATTAGAGTCGGCTTCTACGGCATTTATAC
TAATTTAGATATTGTATTACACAACTTTATACGGAAGTTCTCTGTCAGTC
GACTGACAAAGGTTGATTTGGAGAAGGCTATGTATCCCAGTTACAGTGAG
CGGCGAGTTGAGAATGATCCGGTTTTAGATATAGAGGCATAAAGAAGAAT
TGTGATCAGTACATAATAAACAATCAGCATTGATTAGATGGTTTACATAG
CCTGTTAACAAGGCTGTAAAGTTATGGACGGCTCATGTTGCAGACCAGAG
GCAAGTTAAAATGCATATTAAGTATTTCATATCGTTTTCGATATATTTAG
GTATGGTATCTAAATAGTTTATAAAACAATATTTTATTTTCTATTATACT
GTTATGTTCTTTTGTTACTATATTGTTCCTAGGGTGCGTATGTTTTTATC
GAGTCCTTATCACAAGTAGAGCATCAGTTTTACAGATAGCTGATCAAATC
TTGGGAAGAAGGCAAGACTTTTGAAGTTATCAGGAAATCACTTTTGACAC
CATAATTGGCTAGTAAAAAGATCCTGCTTGGAGTTTCTGTAAAGGAGGCA
CTACTAATAACACGTTTTACGAAGTTACCAATGGCTAGAATTGATAGCAT
TATGCAGCTTTGGGGATCCAATCATTCCGTTTTCCCTTTCAATAATGGGC
CCGTCTATGGGTAGGCTGGGCTGGCTCCCCGTGGGCGCGGGGCGTGTCCC
CAGAGACCTCCTCCACCACAGGTTCTGTGGGAGGGCTGGGCTGGCTTCCC
GTCATTGCGGGGTGTGTCCTCATTGACCTCCTCCGTGGCCGGGTCTGGGG
TTAGGCAGGGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTCAGAGACCTC
CTCCGTGGCCGGGTCTGGGGTTAGGCAGGGCTGGCTTCCCGTCATTGCGG
GGTGTGTCCTCAGAGACCTCCTCCGTGGCCGGGTCCGTGGTAGGGCGGGG
CCACTGGGGTTAGGGCGTTATACGTGACATCTTTCTCACAGTGTCTGGGT
CCTCCATAATGGGTGCTTCCCCTTGCAGGTATCCAAGCCTCCTCCATATT
TATGGGTATTAGTTTAATGGCAAAAGGCAAGTTTACATATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040807XLOC_040807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065080-exon-scaffold_429-1575043694:31860..31913TCONS_00065080-exon-scaffold_429-1575043694:31860..31913Clytia hemisphaericaexon
TCONS_00065080-exon-scaffold_429-1575043694:26522..27417TCONS_00065080-exon-scaffold_429-1575043694:26522..27417Clytia hemisphaericaexon
TCONS_00065080-exon-scaffold_429-1510915933:31860..31913TCONS_00065080-exon-scaffold_429-1510915933:31860..31913Clytia hemisphaericaexon
TCONS_00065080-exon-scaffold_429-1510915933:26522..27417TCONS_00065080-exon-scaffold_429-1510915933:26522..27417Clytia hemisphaericaexon
TCONS_00065080-exon-scaffold_429-1491911889:31860..31913TCONS_00065080-exon-scaffold_429-1491911889:31860..31913Clytia hemisphaericaexon
TCONS_00065080-exon-scaffold_429-1491911889:26522..27417TCONS_00065080-exon-scaffold_429-1491911889:26522..27417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_429supercontigscaffold_429:26522..31913 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161434	0.403717	0.39768	0.540271	0.206084	0.395615	0.701226	0.638589	1.63151	2.78518	5.52536	2.17444	3.57771	4.13572	3.99402	4.60491	5.27525	4.65053	1.72914	2.22936	3.27377	2.48525	1.53173	1.49077	2.05721	2.16207	1.59266	1.8691	0.402984	0.522271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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