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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065094 ID=TCONS_00065094|Name=TCONS_00065094|organism=Clytia hemisphaerica|type=transcript|length=2673bp
CAAGTCAATGAATATGAAAATTGATGAATTGTCCCCAGTGATGGATTCGA
AATTGACGTTGAAGGCTGACAAATGCCAAATTGATGAATTGAGCAACAAA
GTTGACCAGCTATCAATGGAATCAAAATCTGTAAAGGTTACAACAAAGAC
ACATTGGAATTTGCCAGAGCCTGTTTCCATCTTCTTTGGACGAGAAAGTT
TGATTGAATCCATTcatttgaaacttcaaaaaaatcaagcaATTGCTTTG
AGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTTCTTCA
AATGCACAAAGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCATCC
TCAAGAGATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAACAACTA
ATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTTCCTCTCTAA
GTTTTGTGAAGGCTCCAAAGGATCGCTGGTTGTTTTGGATGACGTCACTG
AGGTCACAAAAGACGTCACTTCATTGATTCGaaatgtgaaagaaaaaatc
agcTTATTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGGTTTGAT
TCAAATTGCTGTTCCATGTTTCCAAGATCAAGAATCCATTGGTTTCTTAC
AGAATGAACTTACTACAGCCAACCATCAAGAAATCTCCATTTTAGCGAAT
CGTTTACAATCATTACCTTTAGCCCTTCAGCAAGCCATTTGTTACATCAA
AAAACACAAAGTTCCTCTACACAAATACATCGAACAATTTGAAGCAtgca
gaaaaagtgttttgggAATGAAAATCAATTCCTTTACTGAATATGACAAA
ACATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGTCGAATC
AAATAATGCTCTTTTGATCTTGGGAATGATGGCTTTAATTGACaatcgaa
aaatcaataaaaagacTTTCAGTTATTTTGATAAAGTTGACGAGTTTGAA
TTAAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGAGCG
AAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATC
GTATCGAACAAAAACAATATGTTGAGGATGAATGTCCGTTGACACTGCTT
GAAGATGTTCTTTTGAAAATCGAGGTTTCTATTAAAGATTTGTTTGCAAA
TGATGACTATGAGGATTTATGGTACATTCATGTTTTTCGTTTGATCATGA
GTGGTGGATTCAAAACTATCAACTTTAATGTTTCCCGGGTGTTAACTATC
GCCGCAGGCAGAATGGAGATGGAAAACTTATACCGAATTTCTGAACTATT
TTTAAAAGTTGTTTTAAAACAATATAGGTTATGTCAAGATGTGAAAACTT
TTGATATGCTGTTGGTTGTTCATCGTCGTTTCATATACGCGTCAAGTCAA
TTAGGTTTACTTAATTTGAATGagatttttgcttttgaagAAGAGTTTTC
CTCAGAGCTTGAAGAACATTCTGTATTCGTTTACCGTTGGAAGCTAGAGC
AAGCTGAGGCATATAATATACATGGAAGAGTGTCGTTAGGCGAAGATATa
gttcaaaatttatttaatgAACTAGTCAAGAAGAAAGGATTTGATGATGT
TAAATTAAGATTGGCGAGTTTTCTCACCGTAAGGGATGTTGAAGTTTTGT
TGAATTCAGTTGACACAAATAATCTCAGTGACGTTAACTTTCTGATGTAT
TATTATGCAAAATGTTCTTTATACATCGAGAACGGTTGCTTTCATTTGGC
TGAACAAACCATGAAGAATTGGAAAGAACATTTACACAGAAAACAATTTT
CTCGATCGTCTCAGTTTAACTTCACAAAAAAGAATTGCTTTTTACTTTAC
AAGAAAGGAAATTACAACGAAGCATTACTTGTATGCGATGAACTTAAACG
AGACATTGTCTTTACTAATGCAGATGTTTACATTTCGGAAGCCttgattt
tgatcaaattaGGAAAGTTCAACGACGCAGAAGTGTTACTTGATAACCTT
AATAAACGCAATAATAATGGATCCATCATTAGAATCAGTTCATACCTGAA
ATTTCGAAAGCACGACTTTGAGGCAGTAGAAAATCTCCTCACTATTGTGG
AAGATGAGGatttgttaaatattttgtttttggtaAAGGAATATGCGAAA
CTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATGGTTGAACGATG
tttgcaaatgaaaaaaattgtaaatgaaTTATTTCAAGTACAATTGGATA
TGATTTATCTTTGAAATCTTATTATATGGAATTATGATTAGAATTGCATC
TTTGGGTATTACTCCAACTTTTGGCTAAACTGATTAGTTTTTCAAATGCC
AGCAATGTAATTGTTGCATTGACTAGGCctgtaaaatcaaaatttctttt
taattatgaAAATATTCTAAGGGATGGTTTCAGTGGGGACCTGATTCCAC
CATTCGGTCAAATTTGtgtccaatttccgtcaaaccgtcaaGATCAAGAC
CGAAATTCTGCCActgaaaatttcctttgaaattNAAGTTTTTTTTATCA
TGAAAATATTCGAGGGAgtggtttcagggggtacctgatTCCGCCATTCG
GCAAATTTTTGGTTAATTTCCGC Run BLAST on NCBI transcript from alignment at scaffold_43:48649..53179- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065094 ID=TCONS_00065094|Name=TCONS_00065094|organism=Clytia hemisphaerica|type=transcript|length=4531bp|location=Sequence derived from alignment at scaffold_43:48649..53179- (Clytia hemisphaerica)
CAAGTCAATGAATATGAAAATTGATGGTATGTTTTCCTTCTTCACGTGTT
TTATTTTTAGGAGAAATTGGTATACACTCTTTTAAAACCTATCTGATGAT
TTTCTAAGATTAGGAGGCATTGCCAAGTTGACGTACTAAATGAATTTGAC
CCTTATGATATGATAAGTATTGATTTATTCTTGTTATCTATCTTATAGTT
TTTCGACTTCCTCTGTAATTTATAAGAAATCTTTTGTACAGGGGCCCCGG
CGAAATGAAAGTGATCTTTATAAAAACTTTGAAGTCGCTCAAAAAAAACT
GACACGTTGATTTTCATCATTTTTTATCTAGAATTGTCCCCAGTGATGGA
TTCGAAATTGACGTTGAAGGCTGACAAATGCCAAATTGATGGTAAAGTTA
TACCAGAAAAATTTGTTGTGTTTGTCAAATGTTTTTTGGACCTACCTCGG
AGGTCCTATAAATTAAATGTCCATTCGTTCGTTCGGTCGTGTGTTCGTTC
GGTCGTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAATG
ATGCAAAGTGGCAATGCCCAAAAGTGAGCCCGATTTTCGAAATCAAATTT
TTTCCGGCCGAAAATGCCGGAAATATGCCAGAAAAACTGGGCCGAGTCCG
ATTTTTTTGTTAAATTTTTTTCGGAAATATGCCAGAAATCGCTGTTTTTC
AGGATTTTCATTGGACTTTTTCCTTATAATTGGTTGTTTTTTCATTCAAA
AACATAATTATTAGCAATGCCCATTATCAAGCATGTTTCAATTTTTAATG
AATTTGATTTTGGAAGCCGGAACTATTTAAAAATCGCTGGAACAACCTAT
TTTCGCCGGAAAGACAGTATTTCTCGAATGAATTTCTCGAGTTGTACTTT
ATATTTTTTATGAAATTTTGCACACTGANCCGGAAAGACAGTATTTCTTG
AATGAATTTCTCGAGCTGTACTTTATATTTTTTTATGAAATTTTGCACAC
TGATGCAAAATGACAATACCTAAAATGTGACCGGAGCGTGATTTTCAAAA
ACCATTTTTTTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAAGGGGTT
TTTTGACATTTTCTCGAATTTTCATCCTTGTTTTTTTTCTGATTTTTTGC
AAAAAGATGCGTATTTGCAATGCTCAAAACATGACTGCGTTCGATTTCTT
GAGAACAATTTTTGTCTTATGTCTTTGTTTTTTCACACATTATTTTTAAG
AATGTCCACGATTTTTCAATGAAACTGATATTGGTACAGGAACTTTTAAA
AATCGTCAGAACAGCCGAGAATCGCCGGATTTCTTGAATTTCTCAAGTTG
TTCTTGTATTATTCTGCATTTTCATACTTTTGTCGTCATTTTTCAATTGT
CTCATTACATCAAACAACAGGTAGGTCCATTCAGCATGTAGCTTGTTTCT
CCTTTTTTGAGGTGGTCCGCTAGCAACCTTTTTCATCAAAATAAAACTTT
GGTGTTATCAGATTTCAAATGTATCTAGTCGATGAAAAATGTTTCAAGTG
TTCCGAGACCTTTAAAAATTTCCTCTGTAATCTACACGTACGAAAGTTAT
TTTTATTCTTTTAAAGGAATGTTGCTGAATAAAATGGCCTTTTCTGACCA
GTATCATTTTTTTAACAGAATTGAGCAACAAAGTTGACCAGCTATCAATG
GAATCAAAATCTGTAAAGGGTAAAGCTTTAGCTATGATTTTTATTTTTTC
TATCCATGCTTTATTATTTTTTTTATTCTTTTAAAGGAATATTGCTGAAT
AAAAAGGCCTTTTTTGACGAGTATCATTTTTTTAAACAGAATTGAGCAAC
AAAGTTGACCAGCTATCAATGGAATCAAAATCCGTAAAGGGTAAAGCTTT
AGCTATGATTTTTATTTTAACTACCCATCTCTGCCTGAATTTATTCAAAG
AAACTTTATCTTTAATTTGTTTACCTTCTTTTGTATTCCTTCTAGTTACA
ACAAAGACACATTGGAATTTGCCAGAGCCTGTTTCCATCTTCTTTGGACG
AGAAAGTTTGATTGAATCCATTCATTTGAAACTTCAAAAAAATCAAGCAA
TTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAG
TTTCTTCAAATGCACAAAGATGAATATCAGAAGATATTTTGGATTTCTGC
TGTCATCCTCAAGAGATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTA
AACAACTAATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTTC
CTCTCTAAGTTTTGTGAAGGCTCCAAAGGATCGCTGGTTGTTTTGGATGA
CGTCACTGAGGTCACAAAAGACGTCACTTCATTGATTCGAAATGTGAAAG
AAAAAATCAGCTTATTGTTGACATCTCAATTGAGGGATTGGGAAGATTAT
GGTTTGATTCAAATTGCTGTTCCATGTTTCCAAGATCAAGAATCCATTGG
TTTCTTACAGAATGAACTTACTACAGCCAACCATCAAGAAATCTCCATTT
TAGCGAATCGTTTACAATCATTACCTTTAGCCCTTCAGCAAGCCATTTGT
TACATCAAAAAACACAAAGTTCCTCTACACAAATACATCGAACAATTTGA
AGCATGCAGAAAAAGTGTTTTGGGAATGAAAATCAATTCCTTTACTGAAT
ATGACAAAACATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGG
GTCGAATCAAATAATGCTCTTTTGATCTTGGGAATGATGGCTTTAATTGA
CAATCGAAAAATCAATAAAAAGACTTTCAGTTATTTTGATAAAGTTGACG
AGTTTGAATTAAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTC
AACGAGCGAAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTAT
CCGATATCGTATCGAACAAAAACAATATGTTGAGGATGAATGTCCGTTGA
CACTGCTTGAAGATGTTCTTTTGAAAATCGAGGTTTCTATTAAAGATTTG
TTTGCAAATGATGACTATGAGGATTTATGGTACATTCATGTTTTTCGTTT
GATCATGAGTGGTGGATTCAAAACTATCAACTTTAATGTTTCCCGGGTGT
TAACTATCGCCGCAGGCAGAATGGAGATGGAAAACTTATACCGAATTTCT
GAACTATTTTTAAAAGTTGTTTTAAAACAATATAGGTTATGTCAAGATGT
GAAAACTTTTGATATGCTGTTGGTTGTTCATCGTCGTTTCATATACGCGT
CAAGTCAATTAGGTTTACTTAATTTGAATGAGATTTTTGCTTTTGAAGAA
GAGTTTTCCTCAGAGCTTGAAGAACATTCTGTATTCGTTTACCGTTGGAA
GCTAGAGCAAGCTGAGGCATATAATATACATGGAAGAGTGTCGTTAGGCG
AAGATATAGTTCAAAATTTATTTAATGAACTAGTCAAGAAGAAAGGATTT
GATGATGTTAAATTAAGATTGGCGAGTTTTCTCACCGTAAGGGATGTTGA
AGTTTTGTTGAATTCAGTTGACACAAATAATCTCAGTGACGTTAACTTTC
TGATGTATTATTATGCAAAATGTTCTTTATACATCGAGAACGGTTGCTTT
CATTTGGCTGAACAAACCATGAAGAATTGGAAAGAACATTTACACAGAAA
ACAATTTTCTCGATCGTCTCAGTTTAACTTCACAAAAAAGAATTGCTTTT
TACTTTACAAGAAAGGAAATTACAACGAAGCATTACTTGTATGCGATGAA
CTTAAACGAGACATTGTCTTTACTAATGCAGATGTTTACATTTCGGAAGC
CTTGATTTTGATCAAATTAGGAAAGTTCAACGACGCAGAAGTGTTACTTG
ATAACCTTAATAAACGCAATAATAATGGATCCATCATTAGAATCAGTTCA
TACCTGAAATTTCGAAAGCACGACTTTGAGGCAGTAGAAAATCTCCTCAC
TATTGTGGAAGATGAGGATTTGTTAAATATTTTGTTTTTGGTAAAGGAAT
ATGCGAAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAAATGGTT
GAACGATGTTTGCAAATGAAAAAAATTGTAAATGAATTATTTCAAGTACA
ATTGGATATGATTTATCTTTGAAATCTTATTATATGGAATTATGATTAGA
ATTGCATCTTTGGGTATTACTCCAACTTTTGGCTAAACTGATTAGTTTTT
CAAATGCCAGCAATGTAATTGTTGCATTGACTAGGCCTGTAAAATCAAAA
TTTCTTTTTAATTATGAAAATATTCTAAGGGATGGTTTCAGTGGGGACCT
GATTCCACCATTCGGTCAAATTTGTGTCCAATTTCCGTCAAACCGTCAAG
ATCAAGACCGAAATTCTGCCACTGAAAATTTCCTTTGAAATTNAAGTTTT
TTTTATCATGAAAATATTCGAGGGAGTGGTTTCAGGGGGTACCTGATTCC
GCCATTCGGCAAATTTTTGGTTAATTTCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065094-exon-scaffold_43-1575043694:53154..53179 | TCONS_00065094-exon-scaffold_43-1575043694:53154..53179 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1575043694:52789..52848 | TCONS_00065094-exon-scaffold_43-1575043694:52789..52848 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1575043694:51461..51511 | TCONS_00065094-exon-scaffold_43-1575043694:51461..51511 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1575043694:48649..51184 | TCONS_00065094-exon-scaffold_43-1575043694:48649..51184 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1510915933:53154..53179 | TCONS_00065094-exon-scaffold_43-1510915933:53154..53179 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1510915933:52789..52848 | TCONS_00065094-exon-scaffold_43-1510915933:52789..52848 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1510915933:51461..51511 | TCONS_00065094-exon-scaffold_43-1510915933:51461..51511 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1510915933:48649..51184 | TCONS_00065094-exon-scaffold_43-1510915933:48649..51184 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1491911889:53154..53179 | TCONS_00065094-exon-scaffold_43-1491911889:53154..53179 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1491911889:52789..52848 | TCONS_00065094-exon-scaffold_43-1491911889:52789..52848 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1491911889:51461..51511 | TCONS_00065094-exon-scaffold_43-1491911889:51461..51511 | Clytia hemisphaerica | exon |
| TCONS_00065094-exon-scaffold_43-1491911889:48649..51184 | TCONS_00065094-exon-scaffold_43-1491911889:48649..51184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_43 | supercontig | scaffold_43:48649..53179 - |
Blast
The following BLAST results are available for this feature:
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