TCONS_00065109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065109
Unique NameTCONS_00065109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065109 ID=TCONS_00065109|Name=TCONS_00065109|organism=Clytia hemisphaerica|type=transcript|length=2582bp
ACAATGGAACTACATGCTTACATGAGgCAACTGAAATGAAAAAGTATGTC
ATCAAGGGATCATGGTAAGCTTCccttaaaagaaaagaacttgCTCGAGC
TGAAGAAATGTAGGCGAAAGAAAAAACAGGAGTTCATATTAGGAGTTATT
GTTTTGCTAGTGGTTGATTTCATTTGGGTTGGATCTGCAGAACTAAGTGA
CTATatattcaaagaaaacaaatatGACAAACCTTACTTTACTACATACT
TTAAAACTGTTTTCTTCTCTGTTTATTTGATTGGCTTTTGTTTTGTCAGA
AACTGGCAGTACCAGATCAAACAATCTTGTACCAGAGGCCTtccaacaaa
gaaaatgttgaaaGAAGTTTCAAGAGTTTCACAAGGACCTCAAAATGAGC
ATCTAAGGCAGCAAGCCATCTCATGTGAAACATCAGCCACCTCTACACCT
GGATATATTACaccaccaaaatttgaaaacatgaCAGATGATGAAATTAG
TTTAAATGGTGatagtcaaaacaaaaaagtgaaGTTCAATGATGTACGAG
AAGTACGTTCGCTTGCGAAACGTCATGCAGAAGCACAGATTTTGTCAAGA
ATGTCCCATAACTCTGTTGAAGAGTTGAGAAGCATCTTACTTTCACTTGA
TCAGAAGCTTCCATTGAAAGAAACTATCAAACTTTCAGTGTATTTTGTTG
TGTTGTGGGTTTTCGCTACCTTGGGTTATCAGGCAGCTCTTGCCAATACA
ACACCATCAGTCGCTAATATCCTGTCAGCCACATCTGGAATTTTCACTCT
GTGTTTTGCTGCTTGTTTTCCCTCTTCAAGTGCGGACTNGGATCATGGTA
AGCTTCccttaaaagaaaagaacttgCTCGAGCTGAAGAAATGTAGGCGA
AAGAAAAAACAGGAGTTCATATTAGGAGTTATTGTTTTGCTAGTGGTTGA
TTTCATTTGGGTTGGATCTGCAGAACTAAGTGACTATatattcaaagaaa
acaaatatGACAAACCTTACTTTACTACATACTTTAAAACTGTTTTCTTC
TCTGTTTATTTGATTGGCTTTTGTTTTGTCAGAAACTGGCAGTACCAGAT
CAAACAATCTTGTACCAGAGGCCTtccaacaaagaaaatgttgaaaGAAG
TTTCAAGAGTTTCACAAGGACCTCAAAATGAGCATCTAAGGCAGCAAGCC
ATCTCATGTGAAACATCAGCCACCTCTACACCTGGATATATTACaccacc
aaaatttgaaaacatgaCAGATGATGAAATTAGTTTAAATGGTGatagtc
aaaacaaaaaagtgaaGTTCAATGATGTTCGAGAAGTACGTTCGCTTGCG
AAACGTCATGCAGAAGCACAGATTTTGTCAAGAATGTCCCATAACTCTGT
TGAAGAGTTGAGAGGCATCTTACTTTCACTTGATCAGAAGCTTCCATTAA
AAGAAACTATCAAACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTTCGCT
ACCTTGGGTTATCAGGCAGCTCTTGCCAATACAACACCATCAGTCGCTAA
TATCCTGTCAGCCACATCTGGAATTTTCACTCTGTGTTTTGCTGCTTGTT
TTCCCTCTTCAAGTGCGGACtggttcaatttttcaaaactgttGTCAGTA
CTTGTTAGTTTTGGTGGAGTTTTTATTGTTTGCTGGACGGACCCTGCAAA
GAAAGATTCCACAGTTAATATTGGTGACTTATATGCCATTGGAGGTGCAA
TACTATACGCTACTTATCTTGTCTTGATTAGAAGAAAAGTTGGCGAGGAT
CGTAAATTAGACATGCCATTATTCTTTGGCTTTGTTGGACTATTTGGTGC
CTTGTTTTTTTGGCCAGGCTTTTTCATTTTACATTACACTAATGTCGAGA
GGTTTGAACTCCCACCAGATCTGAAAACTTGGCTTTTACTGATTCTAAAT
GCAGCAATTGGAACCCTTCTGTCAGAAATTTTATGGTTGTGGGGTTGCTT
TTTAACAAGCTCTTTGTTAGCTACTTTATCGCTTGGTTTGGTTGCACCAC
TGTCAATGGCGTTTGATATCATTGTACACAAGGTGCAATTTTCATACCTA
TTTTTTCTGGGAGTTGCACCAATCCTTATTTCCTTTGTTGTTGTAAGCCT
TTTGACTCATTACGAGGGCTATGATCCTGTCATGAATTGTTTTTCAAAGA
TATTTGGTAATACCAAACAGGAGCCCAACCCTGACGAAAGGGAATCTTTA
CTTGAAAATGATGCAGTTGCCTGATTTTGGCAAAATACAATTCACAGAAG
CTGTTCTTTATCTATAATCCCACATCGAAGAGTATATTGAACcttacaaa
aattgaaaataggaAATCAAATTGTAAATAAATTAATATCAATTAATGCA
TTTTGTATTCAGATAATTCCAACAAAACAGGTAATATATTGTTCTGTTtg
gaaaaattaatagaaattctataaatatttttttgataataattCTTTAA
actttaagtttttctttttgttatttttgtatttggttaatttaattttt
ttttgggatGCAATTGACTATCTTAATGGAgg
Run BLAST on NCBI

transcript from alignment at scaffold_430:65024..68270-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065109 ID=TCONS_00065109|Name=TCONS_00065109|organism=Clytia hemisphaerica|type=transcript|length=3247bp|location=Sequence derived from alignment at scaffold_430:65024..68270- (Clytia hemisphaerica)
ACAATGGAACTACATGCTTACATGAGGTAGTTATTCATAATTGCCAGTAT
TATGATATGGTGAAACTTCTATTAGAACATGGTGCATCAGTTAACATGCA
AGACTCTGATGGGAATACACCTTTGCATTCTGCTGTTCTCTTCCACTGTG
TAGAAAATGTCAAAGAACTCTTAAAATACAATCCTAATATTTATACAGAA
AATTATGATGGTGCGACTGCTGTTGATTTTGCTAGAAATATCAGTGATGA
TGAAGTAGAAAGGCTATTAACTGGGACTGTAATCGCAAAATCAAAAACTA
AAAATAGACAAGCTCGAAAAGTTACAAAAAGTGTTAATTCAAAAGTGAAA
TCCTTTCTACCCACAACACCTATTATGTCACCCTCCATTCTGAAGAAGAG
GAAATTACTCCCAGAACAAGAATCCGTTGAACCACCAGCAAAGCGGTCTT
GTGTTCGATTTGCTGATTTACTAGAGGATTGAAAATATTCTTCTTTGGAC
ATTTTACCTTGTAGATTTTTTTTATGTCCTCATCTTTGTTTTTATTTTTA
TCTTATCTTGTGAATAGAAATACTTGTTACACATCTCAAAATAATGATCA
ACCATAGTGCATAAATTCTTTAACCTGTCAGGTTCTTATTTTACTTTCAA
ATTTTCATTCCATTAATTATTTCTTTTTTTCTTTATTAAAGGCAACTGAA
ATGAAAAAGTATGTCATCAAGGGATCATGGTAAGCTTCCCTTAAAAGAAA
AGAACTTGCTCGAGCTGAAGAAATGTAGGCGAAAGAAAAAACAGGAGTTC
ATATTAGGAGTTATTGTTTTGCTAGTGGTTGATTTCATTTGGGTTGGATC
TGCAGAACTAAGTGACTATATATTCAAAGAAAACAAATATGACAAACCTT
ACTTTACTACATACTTTAAAACTGTTTTCTTCTCTGTTTATTTGATTGGC
TTTTGTTTTGTCAGAAACTGGCAGTACCAGATCAAACAATCTTGTACCAG
AGGCCTTCCAACAAAGAAAATGTTGAAAGAAGTTTCAAGAGTTTCACAAG
GACCTCAAAATGAGCATCTAAGGCAGCAAGCCATCTCATGTGAAACATCA
GCCACCTCTACACCTGGATATATTACACCACCAAAATTTGAAAACATGAC
AGATGATGAAATTAGTTTAAATGGTGATAGTCAAAACAAAAAAGTGAAGT
TCAATGATGTACGAGAAGTACGTTCGCTTGCGAAACGTCATGCAGAAGCA
CAGATTTTGTCAAGAATGTCCCATAACTCTGTTGAAGAGTTGAGAAGCAT
CTTACTTTCACTTGATCAGAAGCTTCCATTGAAAGAAACTATCAAACTTT
CAGTGTATTTTGTTGTGTTGTGGGTTTTCGCTACCTTGGGTTATCAGGCA
GCTCTTGCCAATACAACACCATCAGTCGCTAATATCCTGTCAGCCACATC
TGGAATTTTCACTCTGTGTTTTGCTGCTTGTTTTCCCTCTTCAAGTGCGG
ACTNGGATCATGGTAAGCTTCCCTTAAAAGAAAAGAACTTGCTCGAGCTG
AAGAAATGTAGGCGAAAGAAAAAACAGGAGTTCATATTAGGAGTTATTGT
TTTGCTAGTGGTTGATTTCATTTGGGTTGGATCTGCAGAACTAAGTGACT
ATATATTCAAAGAAAACAAATATGACAAACCTTACTTTACTACATACTTT
AAAACTGTTTTCTTCTCTGTTTATTTGATTGGCTTTTGTTTTGTCAGAAA
CTGGCAGTACCAGATCAAACAATCTTGTACCAGAGGCCTTCCAACAAAGA
AAATGTTGAAAGAAGTTTCAAGAGTTTCACAAGGACCTCAAAATGAGCAT
CTAAGGCAGCAAGCCATCTCATGTGAAACATCAGCCACCTCTACACCTGG
ATATATTACACCACCAAAATTTGAAAACATGACAGATGATGAAATTAGTT
TAAATGGTGATAGTCAAAACAAAAAAGTGAAGTTCAATGATGTTCGAGAA
GTACGTTCGCTTGCGAAACGTCATGCAGAAGCACAGATTTTGTCAAGAAT
GTCCCATAACTCTGTTGAAGAGTTGAGAGGCATCTTACTTTCACTTGATC
AGAAGCTTCCATTAAAAGAAACTATCAAACTTTCAGTGTATTTTGTTGTG
TTGTGGGTTTTCGCTACCTTGGGTTATCAGGCAGCTCTTGCCAATACAAC
ACCATCAGTCGCTAATATCCTGTCAGCCACATCTGGAATTTTCACTCTGT
GTTTTGCTGCTTGTTTTCCCTCTTCAAGTGCGGACTGGTTCAATTTTTCA
AAACTGTTGTCAGTACTTGTTAGTTTTGGTGGAGTTTTTATTGTTTGCTG
GACGGACCCTGCAAAGAAAGATTCCACAGTTAATATTGGTGACTTATATG
CCATTGGAGGTGCAATACTATACGCTACTTATCTTGTCTTGATTAGAAGA
AAAGTTGGCGAGGATCGTAAATTAGACATGCCATTATTCTTTGGCTTTGT
TGGACTATTTGGTGCCTTGTTTTTTTGGCCAGGCTTTTTCATTTTACATT
ACACTAATGTCGAGAGGTTTGAACTCCCACCAGATCTGAAAACTTGGCTT
TTACTGATTCTAAATGCAGCAATTGGAACCCTTCTGTCAGAAATTTTATG
GTTGTGGGGTTGCTTTTTAACAAGCTCTTTGTTAGCTACTTTATCGCTTG
GTTTGGTTGCACCACTGTCAATGGCGTTTGATATCATTGTACACAAGGTG
CAATTTTCATACCTATTTTTTCTGGGAGTTGCACCAATCCTTATTTCCTT
TGTTGTTGTAAGCCTTTTGACTCATTACGAGGGCTATGATCCTGTCATGA
ATTGTTTTTCAAAGATATTTGGTAATACCAAACAGGAGCCCAACCCTGAC
GAAAGGGAATCTTTACTTGAAAATGATGCAGTTGCCTGATTTTGGCAAAA
TACAATTCACAGAAGCTGTTCTTTATCTATAATCCCACATCGAAGAGTAT
ATTGAACCTTACAAAAATTGAAAATAGGAAATCAAATTGTAAATAAATTA
ATATCAATTAATGCATTTTGTATTCAGATAATTCCAACAAAACAGGTAAT
ATATTGTTCTGTTTGGAAAAATTAATAGAAATTCTATAAATATTTTTTTG
ATAATAATTCTTTAAACTTTAAGTTTTTCTTTTTGTTATTTTTGTATTTG
GTTAATTTAATTTTTTTTTGGGATGCAATTGACTATCTTAATGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040822XLOC_040822Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065109-exon-scaffold_430-1575043694:68245..68270TCONS_00065109-exon-scaffold_430-1575043694:68245..68270Clytia hemisphaericaexon
TCONS_00065109-exon-scaffold_430-1575043694:65024..67579TCONS_00065109-exon-scaffold_430-1575043694:65024..67579Clytia hemisphaericaexon
TCONS_00065109-exon-scaffold_430-1510915933:68245..68270TCONS_00065109-exon-scaffold_430-1510915933:68245..68270Clytia hemisphaericaexon
TCONS_00065109-exon-scaffold_430-1510915933:65024..67579TCONS_00065109-exon-scaffold_430-1510915933:65024..67579Clytia hemisphaericaexon
TCONS_00065109-exon-scaffold_430-1491911889:68245..68270TCONS_00065109-exon-scaffold_430-1491911889:68245..68270Clytia hemisphaericaexon
TCONS_00065109-exon-scaffold_430-1491911889:65024..67579TCONS_00065109-exon-scaffold_430-1491911889:65024..67579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_430supercontigscaffold_430:65024..68270 -
Expression
No biomaterial libraries express this feature.
Blast
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BLAST of TCONS_00065109 vs. Swiss-Prot (Human)
Match: S35F5 (Solute carrier family 35 member F5 OS=Homo sapiens GN=SLC35F5 PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 2.223e-92
Identity = 197/466 (42.27%), Postives = 285/466 (61.16%), Query Frame = 1 
Query:  910 QEFILGVIVLLVVDFIWVGSAELSDYIFKENKYDKPYFTTYFKTVFFSVYLIGFCFVRNWQYQIKQSCTRGLPTKKMLKEVSRVSQGPQNEHLRQQAISCETSATSTPGYITPPKFENMTDDEI-SLNGDSQN----KKVKFNDVREVRSLAKRHAEAQILSRMSHNSVEELRGILLSLDQKLPLKETIKLSVYFVVLWVFATLGYQAALANTTPSVANILSATSGIFTLCFAACFPSSSADWFNFSKLLSVLVSFGGVFIVCWTDPAKKDSTVNIGDLYAIGGAILYATYLVLIRRKVGEDRKLDMPXXXXXXXXXXXXXXWPGFFILHYTNVERFELPPDLKTWLLLILNAAIGTLLSEILWLWGCFXXXXXXXXXXXXXXXXXSMAFDIIVHKVQFSYLFFLGVAPILISFVVVSLLTHYEGYDPVMNCFSKIFG------NTKQEPNPDER-ESLLENDAVA 2271
            +   LG+++LL+VD IWV S+EL+ Y+F   +Y+KP+F+T+ KT  F +YL+GF   + W    +Q CTRGL  K      +      +         +   S+ S P Y+ P KF ++  ++  S N D++      +V+F+++ E+R L   HA    LSRMS+  V+E   IL ++  KL   +  K+S +F  +W  A L YQ AL++T  ++ NILS+TSG+FTL  AA FPS+S D F  SKLL+V++S GGV +V      K      +G ++++ GA+LYA Y+V+I+RKV  + KLD+P+FFGFVGLF  L  WPGFF+LHYT  E FE P  +   + +I+N  IGT+LSE LWLWGCFLTSSL+ TL+L L  PLS+  D+ + KVQFS+LFF G  P+  SF +V+LL HY  +DPVM    +IF         ++ P   E+ ESL+   +V+
Sbjct:   67 RRMALGIVILLLVDVIWVASSELTSYVF--TQYNKPFFSTFAKTSMFVLYLLGFIIWKPW----RQQCTRGLRGKH-----AAFFADAEGYFAACTTDTTMNSSLSEPLYV-PVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSY-PVKEQESILKTVG-KLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSKLLAVILSIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPVMVGIRRIFAFICRKHRIQRVPEDSEQCESLISMHSVS 517

HSP 2 Score: 147.132 bits (370), Expect = 4.795e-37
Identity = 91/242 (37.60%), Postives = 140/242 (57.85%), Query Frame = 1 
Query:  127 QEFILGVIVLLVVDFIWVGSAELSDYIFKENKYDKPYFTTYFKTVFFSVYLIGFCFVRNWQYQIKQSCTRGLPTKKMLKEVSRVSQGPQNEHLRQQAISCETSATSTPGYITPPKFENMTDDEI-SLNGDSQN----KKVKFNDVREVRSLAKRHAEAQILSRMSHNSVEELRSILLSLDQKLPLKETIKLSVYFVVLWVFATLGYQAALANTTPSVANILSATSGIFTLCFAACFPSSSAD 837
            +   LG+++LL+VD IWV S+EL+ Y+F   +Y+KP+F+T+ KT  F +YL+GF   + W    +Q CTRGL  K      +      +         +   S+ S P Y+ P KF ++  ++  S N D++      +V+F+++ E+R L   HA    LSRMS+  V+E  SIL ++  KL   +  K+S +F  +W  A L YQ AL++T  ++ NILS+TSG+FTL  AA FPS+S D
Sbjct:   67 RRMALGIVILLLVDVIWVASSELTSYVF--TQYNKPFFSTFAKTSMFVLYLLGFIIWKPW----RQQCTRGLRGKH-----AAFFADAEGYFAACTTDTTMNSSLSEPLYV-PVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSY-PVKEQESILKTVG-KLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGD 294
The following BLAST results are available for this feature:
BLAST of TCONS_00065109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35F52.223e-9242.27Solute carrier family 35 member F5 OS=Homo sapiens... [more]
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