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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065126 ID=TCONS_00065126|Name=TCONS_00065126|organism=Clytia hemisphaerica|type=transcript|length=909bp
NGAAATGACAAAGCCTGAGAAACTGTAAACCTATTGGTTAAAACAAAAAC
TACCCCAggtttcacccaaaaaaaccgAACATCTTTGAagttacagacag
acagacaggcagatgaagagaaaaacaaagacaaacattCTCAAATTATT
TCTCATCATAAGTTATCTAAGTCCATGTCTTTGGTATATAAATAAACTGT
AGCTTGGTATTGATTTGGTTACaatcttttttgcttatttatgcCTTAGC
ATAAATCACCTCAAAGGGAAAGTATTGTAGTTCGCAAACGCCTTGGAAGA
AGGAGCGCGTCGCTCCATATCAATCCCGAGagacaattttgtttttgaaa
aactcaCAAGATACAGGCAAGTCGCAAACAACTCTGGAAtctatgaaaat
atgaaaaaataaatagaaaaaataagctAGTTCGAGGGGCGCGTCGTCAC
CATGTATCTCGTCTCccaacccaaattttttagaTATGAAATATATTGAT
CATTGAGTGTACAATAAACCAAGTCACAAAGCACTATGCACTCATACTAC
AAAATATTAGTTTTTGTATCccaattttcttgaatttgtcTGCCTGATCA
TAAAAATATCtgacaaatgaaaatgtaaGTGGAAGTTTAGGTATATGTCC
ATGAATTAAAGGCAAGTGTTGATAATAAATAGAAACAACAAATGAAGTCA
ATcattttcataaactttaatcaatttcttatgttattttcttatttctt
tgtGTATTATTTAAAGAGTTAAACCATTCAAATAAGACAGACATCCAGAC
AGTAGGAAATATATATGGCTAGTAAAACTTTGAAGCAAAGCCAAATTTTG
AGGATGAATCTCTCCCTGTCACCTGTATGTAGGACACATGGCTGCTCATG
TTTCAAAAG Run BLAST on NCBI transcript from alignment at scaffold_431:33461..34922+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065126 ID=TCONS_00065126|Name=TCONS_00065126|organism=Clytia hemisphaerica|type=transcript|length=1462bp|location=Sequence derived from alignment at scaffold_431:33461..34922+ (Clytia hemisphaerica)
NGAAATGACAAAGCCTGAGAAACTGTAAACCTATTGGTTAAAACAAAAAC
TACCCCAggtttcacccaaaaaaaccgAACATCTTTGAagttacagacag
acagacaggcagatgaagagaaaaacaaagacaaacattCTCAAATTATT
TCTCATCATAAGTTATCTAAGTCCATGTCTTTGGTATATAAATAAACTGT
AGCTTGGTATTGATTTGGTTACaatcttttttgcttatttatgcCTTAGC
ATAAATCACCTCAAAGGGAAAGTATTGTAGTTCGCAAACGCCTTGGAAGA
AGGAGCGCGTCGCTCCATATCAATCCCGAGagacaattttgtttttgaaa
aactcaCAAGATACAGGCAAGTCGCAAACAACTCTGGAATCCCTAATCtc
taataaaaatggaaaaattattcctgactaaatttaaaaatatataaatt
gttaagaaaatttgaaaaaatataaggaaaaaataagcTAGTTCGAGGAG
CGCGTCGTCACCATGTATCTTGTCTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTACAGGCAAGTCGCAAACAACTCTGGAAtctatgaa
aatatgaaaaaataaatagaaaaaataagctAGTTCGAGGGGCGCGTCGT
CACCATGTATCTCGTCTCccaacccaaattttttagaTATGAAATATATT
GATCATTGAGTGTACAATAAACCAAGTCACAAAGCACTATGCACTCATAC
TACAAAATATTAGTTTTTGTATCccaattttcttgaatttgtcTGCCTGA
TCATAAAAATATCtgacaaatgaaaatgtaaGTGGAAGTTTAGGTATATG
TCCATGAATTAAAGGCAAGTGTTGATAATAAATAGAAACAACAAATGAAG
TCAATcattttcataaactttaatcaatttcttatgttattttcttattt
ctttgtGTATTATTTAAAGAGTTAAACCATTCAAATAAGACAGACATCCA
GACAGTAGGAAATATATATGGCTAGTAAAACTTTGAAGCAAAGCCAAATT
TTGAGGATGAATCTCTCCCTGTCACCTGTATGTAGGACACATGGCTGCTC
ATGTTTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065126-exon-scaffold_431-1491911889:33461..33826 | TCONS_00065126-exon-scaffold_431-1491911889:33461..33826 | Clytia hemisphaerica | exon |
| TCONS_00065126-exon-scaffold_431-1510915933:33461..33826 | TCONS_00065126-exon-scaffold_431-1510915933:33461..33826 | Clytia hemisphaerica | exon |
| TCONS_00065126-exon-scaffold_431-1575043694:33461..33826 | TCONS_00065126-exon-scaffold_431-1575043694:33461..33826 | Clytia hemisphaerica | exon |
| TCONS_00065126-exon-scaffold_431-1491911889:34380..34922 | TCONS_00065126-exon-scaffold_431-1491911889:34380..34922 | Clytia hemisphaerica | exon |
| TCONS_00065126-exon-scaffold_431-1510915933:34380..34922 | TCONS_00065126-exon-scaffold_431-1510915933:34380..34922 | Clytia hemisphaerica | exon |
| TCONS_00065126-exon-scaffold_431-1575043694:34380..34922 | TCONS_00065126-exon-scaffold_431-1575043694:34380..34922 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_431 | supercontig | scaffold_431:33461..34922 + |
Blast
The following BLAST results are available for this feature:
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