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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065127 ID=TCONS_00065127|Name=TCONS_00065127|organism=Clytia hemisphaerica|type=transcript|length=910bp
gacaaaatgtacaaaatttgcATGAACACCAAAGATAAAGACATGAAAAA
ACAAAGGTTTGCAAGGTtcaagaaattcaaaaacaatttaaccAAATTAC
TTAGAGCTAGTAAAACACTCTACTACAAAAATCTCTTTTCGTCCTATGGT
AGAAACTTAAGACTGATATGGAAAGGAATTCGAGAAATAACAGGGggcaa
atcaaaatcaaatgacCTCCCACAAGTCTTTATTCACAAAGGTAAATCAA
TCAAAACTGATGATAATATTGCAACCAGTTTCAATGAATATTACAGTTCT
ATAGCAGAGaaaacaaaatcgaaaattgtACCAACTGATAAACATTTTGC
TCATTTCCTACAGAGACCAAATGCACACTCAATCTTTCTCAATCCTACTA
GCCCTCTAGAAGTTCTTAATATAATCACCAAACTTAACAACAACAAGTCT
GTTGGTCCAGAAAGCATTCCAGCTGCATTCCTCAAAATCCTTGCGCCAGA
CATAAGCATTACTCTATCAAAACTCTTTAATGAAAGTCTCACCCAAGGCC
ATTTCCCTGATTGcttaaaatcagcaaaaatcacACCTGTTCATAAAAAA
GATTCTCTCATAGATCTTATAAATTATCGTCCAATATCCCTACTTTCAAA
CAttagcaaaatctttgaaaaaattctccatGATAGACTTTATAACTTCT
TAGAGAGTCACAAGATAATATTTGAGAATCAATTTGGCTTTCGAAAACAA
CACAACACTACACATGCATGTATGGCTTTAACAGAGTCAATTAGGAATGC
GCTGGATAAAGGAGAGTTTGCTACTGGAATCTTTGTGGACCTTCAAAAAG
CTTTTGACACTGTTGAACATAATATCTTGATCCAAAAACTTAACTTCTAT
GGTATCTGAG Run BLAST on NCBI protein sequence of TCONS_00065127-protein >TCONS_00065127-protein ID=TCONS_00065127-protein|Name=TCONS_00065127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
DKMYKICMNTKDKDMKKQRFARFKKFKNNLTKLLRASKTLYYKNLFSSYG
RNLRLIWKGIREITGGKSKSNDLPQVFIHKGKSIKTDDNIATSFNEYYSS
IAEKTKSKIVPTDKHFAHFLQRPNAHSIFLNPTSPLEVLNIITKLNNNKS
VGPESIPAAFLKILAPDISITLSKLFNESLTQGHFPDCLKSAKITPVHKK
DSLIDLINYRPISLLSNISKIFEKILHDRLYNFLESHKIIFENQFGFRKQ
HNTTHACMALTESIRNALDKGEFATGIFVDLQKAFDTVEHNILIQKLNFY
GI Run BLAST on NCBI transcript from alignment at scaffold_431:71036..71998+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065127 ID=TCONS_00065127|Name=TCONS_00065127|organism=Clytia hemisphaerica|type=transcript|length=963bp|location=Sequence derived from alignment at scaffold_431:71036..71998+ (Clytia hemisphaerica)
gacaaaatgtacaaaatttgcATGAACACCAAAGATAAAGACATGAAAAA
ACAAAGGTTTGCAAGGTtcaagaaattcaaaaacaatttaaccAAATTAC
TTAGAGCTAGTAAAACACTCTACTACAAAAATCTCTTTTCGTCCTATGGT
AGAAACTTAAGACTGATATGGAAAGGAATTCGAGAAATAACAGGGggcaa
atcaaaatcaaatgacCTCCCACAAGTCTTTATTCACAAAGGTAAATCAA
TCAAAACTGATGATAATATTGCAACCAGTTTCAATGAATATTACAGTTCT
ATAGCAGAGaaaacaaaatcgaaaattgtACCAACTGATAAACATTTTGC
TCATTTCCTACAGAGACCAAATGCACACTCAATCTTTCTCAATCCTACTA
GCCCTCTAGAAGTTCTTAATATAATCACCAAACTTAACAACAACAAGTCT
GTTGGTCCAGAAAGCATTCCAGCTGCATTCCTCAAAATCCTTGCGCCAGA
CATAAGCATTACTCTATCAAAACTCTTTAATGAAAGTCTCACCCAAGGCC
ATTTCCCTGATTGcttaaaatcagcaaaaatcacACCTGTTCATAAAAAA
GATTCTCTCATAGATCTTATAAATTATCGTCCAATATCCCTACTTTCAAA
CAttagcaaaatctttgaaaaaattctccatGATAGACTTTATAACATTT
GAGAATATTTGAGAATCAATTTGGCTNTCTCCATGATAGACTTTATAACT
TCTTAGAGAGTCACAAGATAATATTTGAGAATCAATTTGGCTTTCGAAAA
CAACACAACACTACACATGCATGTATGGCTTTAACAGAGTCAATTAGGAA
TGCGCTGGATAAAGGAGAGTTTGCTACTGGAATCTTTGTGGACCTTCAAA
AAGCTTTTGACACTGTTGAACATAATATCTTGATCCAAAAACTTAACTTC
TATGGTATCTGAG Coding sequence (CDS) from alignment at scaffold_431:71036..71998+ >TCONS_00065127 ID=TCONS_00065127|Name=TCONS_00065127|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_431:71036..71998+ (Clytia hemisphaerica)
gacaaaatgtacaaaatttgcATGAACACCAAAGATAAAGACATGAAAAA
ACAAAGGTTTGCAAGGTtcaagaaattcaaaaacaatttaaccAAATTAC
TTAGAGCTAGTAAAACACTCTACTACAAAAATCTCTTTTCGTCCTATGGT
AGAAACTTAAGACTGATATGGAAAGGAATTCGAGAAATAACAGGGggcaa
atcaaaatcaaatgacCTCCCACAAGTCTTTATTCACAAAGGTAAATCAA
TCAAAACTGATGATAATATTGCAACCAGTTTCAATGAATATTACAGTTCT
ATAGCAGAGaaaacaaaatcgaaaattgtACCAACTGATAAACATTTTGC
TCATTTCCTACAGAGACCAAATGCACACTCAATCTTTCTCAATCCTACTA
GCCCTCTAGAAGTTCTTAATATAATCACCAAACTTAACAACAACAAGTCT
GTTGGTCCAGAAAGCATTCCAGCTGCATTCCTCAAAATCCTTGCGCCAGA
CATAAGCATTACTCTATCAAAACTCTTTAATGAAAGTCTCACCCAAGGCC
ATTTCCCTGATTGcttaaaatcagcaaaaatcacACCTGTTCATAAAAAA
GATTCTCTCATAGATCTTATAAATTATCGTCCAATATCCCTACTTTCAAA
CAttagcaaaatctttgaaaaaattctccatGATAGACTTTATAACTTCT
TAGAGAGTCACAAGATAATATTTGAGAATCAATTTGGCTTTCGAAAACAA
CACAACACTACACATGCATGTATGGCTTTAACAGAGTCAATTAGGAATGC
GCTGGATAAAGGAGAGTTTGCTACTGGAATCTTTGTGGACCTTCAAAAAG
CTTTTGACACTGTTGAACATAATATCTTGATCCAAAAACTTAACTTCTAT
GGTATCTGAgacaaaatgtacaaaatttgcATGAACACCAAAGATAAAGA
CATGAAAAAACAAAGGTTTGCAAGGTtcaagaaattcaaaaacaatttaa
ccAAATTACTTAGAGCTAGTAAAACACTCTACTACAAAAATCTCTTTTCG
TCCTATGGTAGAAACTTAAGACTGATATGGAAAGGAATTCGAGAAATAAC
AGGGggcaaatcaaaatcaaatgacCTCCCACAAGTCTTTATTCACAAAG
GTAAATCAATCAAAACTGATGATAATATTGCAACCAGTTTCAATGAATAT
TACAGTTCTATAGCAGAGaaaacaaaatcgaaaattgtACCAACTGATAA
ACATTTTGCTCATTTCCTACAGAGACCAAATGCACACTCAATCTTTCTCA
ATCCTACTAGCCCTCTAGAAGTTCTTAATATAATCACCAAACTTAACAAC
AACAAGTCTGTTGGTCCAGAAAGCATTCCAGCTGCATTCCTCAAAATCCT
TGCGCCAGACATAAGCATTACTCTATCAAAACTCTTTAATGAAAGTCTCA
CCCAAGGCCATTTCCCTGATTGcttaaaatcagcaaaaatcacACCTGTT
CATAAAAAAGATTCTCTCATAGATCTTATAAATTATCGTCCAATATCCCT
ACTTTCAAACAttagcaaaatctttgaaaaaattctccatGATAGACTTT
ATAACTTCTTAGAGAGTCACAAGATAATATTTGAGAATCAATTTGGCTTT
CGAAAACAACACAACACTACACATGCATGTATGGCTTTAACAGAGTCAAT
TAGGAATGCGCTGGATAAAGGAGAGTTTGCTACTGGAATCTTTGTGGACC
TTCAAAAAGCTTTTGACACTGTTGAACATAATATCTTGATCCAAAAACTT
AACTTCTATGGTATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065127-exon-scaffold_431-1491911889:71036..71731 | TCONS_00065127-exon-scaffold_431-1491911889:71036..71731 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1510915933:71036..71731 | TCONS_00065127-exon-scaffold_431-1510915933:71036..71731 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1575043694:71036..71731 | TCONS_00065127-exon-scaffold_431-1575043694:71036..71731 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1491911889:71785..71998 | TCONS_00065127-exon-scaffold_431-1491911889:71785..71998 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1510915933:71785..71998 | TCONS_00065127-exon-scaffold_431-1510915933:71785..71998 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1575043694:71785..71998 | TCONS_00065127-exon-scaffold_431-1575043694:71785..71998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_431 | supercontig | scaffold_431:71036..71998 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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