TCONS_00065134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065134
Unique NameTCONS_00065134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065134 ID=TCONS_00065134|Name=TCONS_00065134|organism=Clytia hemisphaerica|type=transcript|length=622bp
TCACTGTCAAAGTCGAAGTTACATATTTAGACACTGATATGACTTCTCGG
ACTTCAGAGTGCACGCTCAACCAAAAATGTatatttgctttaaaaaagta
tGCGAAACTATATTATAGTGTTATACAGAGTGGAATTATTGGGTGCCCTT
TCTGATAAGTGAAACCTTTATACGGTTTATATCGCTAAATAATCGCTAAA
TAAGATTATAAATGTACATCCAAATTACAGTCAAACCACGAATAAACGGA
TATTATCGTTACCTCTAAGTTTTCAGATCCATGTTCCCAGTTGTCCATAA
TGTTATTTTCCATAATCGTGTTTCCACCAAGGCCTTATCAAATATCTTCC
TCGTCCTAAGCAAACCATAGAAGTTAAAgtctgtttcaaaaaaataagca
gTTGTTCGTGCATTTCAAGATGATTACTCTTGAAAAAAATGCTTTACTAA
AACGTAACttctcgttggaaagatatcatTAAGTGGAagatttttattgt
atttcaaaagttttttgaaattggcATTTGAAAATCATACAAAAGCAAAA
AAAGAAAATACACTGCTTCTATCGATGAGAAAAGATAAAATCCGTGTCGT
GTAAAAAGTTAAGTATGTCTAT
Run BLAST on NCBI

transcript from alignment at scaffold_431:3453..4074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065134 ID=TCONS_00065134|Name=TCONS_00065134|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at scaffold_431:3453..4074 (Clytia hemisphaerica)
ATAGACATACTTAACTTTTTACACGACACGGATTTTATCTTTTCTCATCG
ATAGAAGCAGTGTATTTTCTTTTTTTGCTTTTGTATGATTTTCAAATgcc
aatttcaaaaaacttttgaaatacaataaaaatctTCCACTTAatgatat
ctttccaacgagaaGTTACGTTTTAGTAAAGCATTTTTTTCAAGAGTAAT
CATCTTGAAATGCACGAACAActgcttatttttttgaaacagacTTTAAC
TTCTATGGTTTGCTTAGGACGAGGAAGATATTTGATAAGGCCTTGGTGGA
AACACGATTATGGAAAATAACATTATGGACAACTGGGAACATGGATCTGA
AAACTTAGAGGTAACGATAATATCCGTTTATTCGTGGTTTGACTGTAATT
TGGATGTACATTTATAATCTTATTTAGCGATTATTTAGCGATATAAACCG
TATAAAGGTTTCACTTATCAGAAAGGGCACCCAATAATTCCACTCTGTAT
AACACTATAATATAGTTTCGCatacttttttaaagcaaatatACATTTTT
GGTTGAGCGTGCACTCTGAAGTCCGAGAAGTCATATCAGTGTCTAAATAT
GTAACTTCGACTTTGACAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040839XLOC_040839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065134-exon-scaffold_431-1491911889:3453..4074TCONS_00065134-exon-scaffold_431-1491911889:3453..4074Clytia hemisphaericaexon
TCONS_00065134-exon-scaffold_431-1510915933:3453..4074TCONS_00065134-exon-scaffold_431-1510915933:3453..4074Clytia hemisphaericaexon
TCONS_00065134-exon-scaffold_431-1575043694:3453..4074TCONS_00065134-exon-scaffold_431-1575043694:3453..4074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:3453..4074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.43649	0.415963	0.266097	0.201484	0.537486	0.640792	0.510165	0.866078	0.340974	0.608157	0	0.701209	0.992494	0.737551	1.1484	1.26541	0.594623	0.925074	0.456581	0.954516	2.94494	3.71581	2.25239	2.09473	0	0.0823128	2.52425	2.24526	1.61556	0.340102
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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