TCONS_00065143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065143
Unique NameTCONS_00065143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065143 ID=TCONS_00065143|Name=TCONS_00065143|organism=Clytia hemisphaerica|type=transcript|length=441bp
TACTCATTAATATTCAAGATGGCCAACGCGCCATAACCAAAAAAGCGCGC
GCACACATTTAGACTTTGAAAAGTGGGttgacaaattttgattttctgat
agggtgcatgtcactagtccgacactttctagtccgacagtaaaaaaatc
cgaatctataaaataaatccacaatttggaagtctttttttctgacgtca
cttttgtccgaaaacgaaacattttttttagagtgtcgaatgttaAACAA
GGGTTTTTATAAGCAACACCTATTTTCGGCCTTGCTTGGAGGATGCTTAT
AAGCTGATAATGTTGTAGTTCAACTTcttaaaaatatgttttgaccACCA
CCCATATTTATTGGGTAAAGGCTATTGTTTGCCACGGTTACATTgtctaa
aaaacttttactaataAAGTATAAAGAATTGGCTAATTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_431:63704..64144

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065143 ID=TCONS_00065143|Name=TCONS_00065143|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at scaffold_431:63704..64144 (Clytia hemisphaerica)
TAAAATTAGCCAATTCTTTATACTTtattagtaaaagttttttagacAAT
GTAACCGTGGCAAACAATAGCCTTTACCCAATAAATATGGGTGGTggtca
aaacatatttttaagAAGTTGAACTACAACATTATCAGCTTATAAGCATC
CTCCAAGCAAGGCCGAAAATAGGTGTTGCTTATAAAAACCCTTGTTtaac
attcgacactctaaaaaaaatgtttcgttttcggacaaaagtgacgtcag
aaaaaaagacttccaaattgtggatttattttatagattcggattttttt
actgtcggactagaaagtgtcggactagtgacatgcaccctatcagaaaa
tcaaaatttgtcaaCCCACTTTTCAAAGTCTAAATGTGTGCGCGCGCTTT
TTTGGTTATGGCGCGTTGGCCATCTTGAATATTAATGAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040848XLOC_040848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065143-exon-scaffold_431-1491911889:63704..64144TCONS_00065143-exon-scaffold_431-1491911889:63704..64144Clytia hemisphaericaexon
TCONS_00065143-exon-scaffold_431-1510915933:63704..64144TCONS_00065143-exon-scaffold_431-1510915933:63704..64144Clytia hemisphaericaexon
TCONS_00065143-exon-scaffold_431-1575043694:63704..64144TCONS_00065143-exon-scaffold_431-1575043694:63704..64144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:63704..64144 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.329591	0.593159	0.369772	0.760699	2.89925	2.5251	1.4673	0.591262	2.07073	0.798093	2.11235	2.19308	0.794262	1.1008	0.727434	0.559116	0	0.507007	0.809449	0.680424	0.147853	0	0.0108786	0	0.38459	0	1.13028	0.223782	0.83822	0.607717
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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