TCONS_00065144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065144
Unique NameTCONS_00065144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065144 ID=TCONS_00065144|Name=TCONS_00065144|organism=Clytia hemisphaerica|type=transcript|length=497bp
GCTCTGTGATTCTTTGCGACTGGATTTTGACATTGGTTGCAAGGATATTT
TATATTTCTAGCTGGCATGGAGAAAGAGAGGGAGataaagagagagagag
agtgaaTTAGGTTTTGGTTAGTTGTCtacaaaaaaagactttgaCTCAGT
GGGCATTGGAGTGAGGTTGGTGGTATAACGGACCTATAACTAGTATGTAT
AAATATCTAATGGATAAATAAAGTAAATATCTCTGTCTAATATATACACt
gaaaaaaggcaaaaagaaaaaaaaaagggcTAGGATCATACAAATTTATG
TATGACTGAACTAGGTTTTACTGTCTCTTATTTTGGAGCTTGATAgaatc
aataactttttttccaaagtgtGATTCTAGATCATGGATGTGCCCAATCA
CAAGCTTGTTATCATTACTGTCTATGATCCTAATAGTGCCGTTGATGGTG
TAAAAACTTTTCACAAGTTTCTTTTTGAACAGTGCATTACACTTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_431:65425..65921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065144 ID=TCONS_00065144|Name=TCONS_00065144|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at scaffold_431:65425..65921 (Clytia hemisphaerica)
GGAAAGTGTAATGCACTGTTCAAAAAGAAACTTGTGAAAAGTTTTTACAC
CATCAACGGCACTATTAGGATCATAGACAGTAATGATAACAAGCTTGTGA
TTGGGCACATCCATGATCTAGAATCacactttggaaaaaaagttattgat
tcTATCAAGCTCCAAAATAAGAGACAGTAAAACCTAGTTCAGTCATACAT
AAATTTGTATGATCCTAgcccttttttttttctttttgccttttttcaGT
GTATATATTAGACAGAGATATTTACTTTATTTATCCATTAGATATTTATA
CATACTAGTTATAGGTCCGTTATACCACCAACCTCACTCCAATGCCCACT
GAGtcaaagtctttttttgtaGACAACTAACCAAAACCTAAttcactctc
tctctctctttatCTCCCTCTCTTTCTCCATGCCAGCTAGAAATATAAAA
TATCCTTGCAACCAATGTCAAAATCCAGTCGCAAAGAATCACAGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040849XLOC_040849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065144-exon-scaffold_431-1491911889:65425..65921TCONS_00065144-exon-scaffold_431-1491911889:65425..65921Clytia hemisphaericaexon
TCONS_00065144-exon-scaffold_431-1510915933:65425..65921TCONS_00065144-exon-scaffold_431-1510915933:65425..65921Clytia hemisphaericaexon
TCONS_00065144-exon-scaffold_431-1575043694:65425..65921TCONS_00065144-exon-scaffold_431-1575043694:65425..65921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:65425..65921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36956	0	0.139478	0.409373	5.64822	2.54641	3.00914	3.85501	1.29247	2.32701	3.72661	1.10504	0.381739	0.720041	0.59853	0.750664	1.75704	0.284354	1.3095	0.822179	1.32945	0.87142	0.282487	0.698455	0.13226	1.06235	0.168913	0.360538	0	0.139304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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