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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065170 ID=TCONS_00065170|Name=TCONS_00065170|organism=Clytia hemisphaerica|type=transcript|length=676bp
GTCTGTAGAAGGCATCAACCTTTTTggtaaaagaaaatcaaagagCAGTA
CAGGAGCTTCTCTGAAGAGGTACATCATAACAAAAAGGAAACATGATGAA
GGTAGCAAGTATTTTGGTCTTTTTGGCCATAGCAGCTTCGACTGAAGGCT
ATGGTGACCCAGTTTTGCTTCGAGTACGATCAGTGAACACTGTTTACACC
TCAACCTATCTCATCAAAAAGACACCATTGAACATGCATGCAGCAAAGGA
GGCTTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGATGATCTGCCAG
AACATCATTTCTTAGTCCATGAATTACAGAAACTTCACATCAAATCTGCT
TGGGTTGGATTAAACGACAAAGCTTACGAAAAAGTTTTCAGATGGGATGG
TTCAAATCTCCCAGGATTCAAAAAATGGTGTCCACACGAGCCAAACAATT
TTGGAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGAAATGTTTG
AACGATCTTGGTTGCGCGCATGCGCGGccatacatttgtgaaatcaaCCA
AAGCAAAGTGACCAGTGACGTCACAGTCTAAAGAACCACAACATTTTGTC
ATCGTTTTtatttaatacattttttacattttttacacaaacatgcaata
aaatttttacaagGTATCAATAAAGG Run BLAST on NCBI protein sequence of TCONS_00065170-protein >TCONS_00065170-protein ID=TCONS_00065170-protein|Name=TCONS_00065170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MMKVASILVFLAIAASTEGYGDPVLLRVRSVNTVYTSTYLIKKTPLNMHA
AKEACAKCGGFLATIDDLPEHHFLVHELQKLHIKSAWVGLNDKAYEKVFR
WDGSNLPGFKKWCPHEPNNFGNAEDCVELIADKKCLNDLGCAHARPYICE
INQSKVTSDVTV Run BLAST on NCBI transcript from alignment at scaffold_433:180467..182742+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065170 ID=TCONS_00065170|Name=TCONS_00065170|organism=Clytia hemisphaerica|type=transcript|length=2276bp|location=Sequence derived from alignment at scaffold_433:180467..182742+ (Clytia hemisphaerica)
GTCTGTAGAAGGCATCAACCTTTTTggtaaaagaaaatcaaagagCAGTA
CAGGAGCTTCTCTGAAGAGGTAAGAATTCTTTTTCTACTTTTACTAAGAG
CCCCTAAACCAGTTTGCGAAATTACGTGATCGGGCGGCTTTTTTGGCGTG
ATCCACAAAGCATGATGAGTGATTATTAGGAGAATTCTTTTCGGCTTGAT
GGTACAATGTTGGGGTAATGGCGCAGAAGGGGCTGCTACGAAGATGAtta
ctttctttcttttgctCAAAATTGGGCTGGTATCTTCTTGACTTGCATGC
TACAGTCAGATCTGTTCAGCCTTACTGCAAAACGACATGTTTTACTCGAA
CACGATCCCCTTTCAATGCTAGAAGGCTGAAGGTGTATCACACCATTATC
ATACCCTGATATTTTCATTGCATTTTTATTTCGCAGGTACATCATAACAA
AAAGGAAACATGATGAAGGTAGCAAGTATTTTGGTCTTTTTGGCCATAGC
AGCTTCGACTGAAGGCTATGGTGACCCAGGTACGTTTATCGtcatttgta
atttttaaatacaATCTGCGTCAAAAAAATACAGTCTATCTGAGACTTTT
GGTTATTTCCTCCTTTTCGGAAATTTGAAGTTcggagaaagtcgcttttg
ggctatttGTTAAATGTAATCGAATAACGAACTAAAACTCAACACTTCAA
ACCTAAGTAAGAGcacttccaaattgtttgtggcTATGAGATTTCAtggg
aattttcattttttctcaaatattttgatttagatTGTAGAAAATGCAAA
GATTGCCCAGAATGACGAACTGCCAGTCCAAATTCTAAAATTAGTCCACT
TTATTACACTGACCTTTAAATATCCTTAACTAAAttttctcaatcccagc
caagcaaaatctttgatcggagttttttaaaTGTTACCCTAATGGCAGCC
TAGCCTGTTACCCTACTTGATAGCGGTGTAAaagcatcgagagcgctaga
acCAATTTATTCTTcgaatatttttgataatgcgGTTAAAGCTTTGTCCA
GActatataaaggtcagtactGTGTTCCTTTAAACATatctaaaaattgc
actctacaATGTACTGATTTTCATTTTCGTATGTCAACGCAAGCAATACA
CCTTGCATTCCCCTAGCTCCAGGTGATCCTGGACAGCTATTCTATCTCTT
CTTTATTAATAAATCTTTCaatcgaaatttatttttccattccATAGTTT
TGCTTCGAGTACGATCAGTGAACACTGTTTACACCTCAACCTATCTCATC
AAAAAGACACCATTGAACATGCATGCAGCAAAGGAGGCTTGTGCTAAATG
TGGAGGTTTCTTGGCAACTATTGATGATCTGCCAGAACATCATTTCTTAG
TCCATGAATTACAGTAAGTACAAAATACCAAGGTAGATTTCGATTTGACT
ACAcctttttcgaccgtagccgccattTGCCACGCGggaatttttttgtc
cgttttatcaccctaaaaccgtcccagtcttttctTTCGCACCTTATAGA
cagtagaaaaaagtgtaaagaaaaaggattggatcgagtttagggtggta
aaacggacaaaaaaatacctgcgcagcaattggtggctacggtcgaaaat
gtGTATTCTCTAAAACCCTAAGTTTTTACACCTAACAGCAAAAATTATCT
AAAGTTTCTTCGTGAGCGCGTTTTATTGGAGATTTTTTGGTAGcagtttt
tatttgatttggttggtcgttctAAACTGtaataaataaaacaattttgt
tactttttctaaagaatgtgtcacctctattacttcaaatcaCCAATTAG
TAAAGTATCTACAACTACAGCTCATCTCAAAGCCAGGTGGCGCCATCCTT
ATACTTTTATATTCGATCCCTTACATAGGAAACTTCACATCAAATCTGCT
TGGGTTGGATTAAACGACAAAGCTTACGAAAAAGTTTTCAGATGGGATGG
TTCAAATCTCCCAGGATTCAAAAAATGGTGTCCACACGAGCCAAACAATT
TTGGAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGAAATGTTTG
AACGATCTTGGTTGCGCGCATGCGCGGccatacatttgtgaaatcaaCCA
AAGCAAAGTGACCAGTGACGTCACAGTCTAAAGAACCACAACATTTTGTC
ATCGTTTTtatttaatacattttttacattttttacacaaacatgcaata
aaatttttacaagGTATCAATAAAGG Coding sequence (CDS) from alignment at scaffold_433:180467..182742+ >TCONS_00065170 ID=TCONS_00065170|Name=TCONS_00065170|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_433:180467..182742+ (Clytia hemisphaerica)
ATGATGAAGGTAGCAAGTATTTTGGTCTTTTTGGCCATAGCAGCTTCGAC
TGAAGGCTATGGTGACCCAGTTTTGCTTCGAGTACGATCAGTGAACACTG
TTTACACCTCAACCTATCTCATCAAAAAGACACCATTGAACATGCATGCA
GCAAAGGAGGCTTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGATGA
TCTGCCAGAACATCATTTCTTAGTCCATGAATTACAGAAACTTCACATCA
AATCTGCTTGGGTTGGATTAAACGACAAAGCTTACGAAAAAGTTTTCAGA
TGGGATGGTTCAAATCTCCCAGGATTCAAAAAATGGTGTCCACACGAGCC
AAACAATTTTGGAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGA
AATGTTTGAACGATCTTGGTTGCGCGCATGCGCGGccatacatttgtgaa
atcaaCCAAAGCAAAGTGACCAGTGACGTCACAGTCTAAATGATGAAGGT
AGCAAGTATTTTGGTCTTTTTGGCCATAGCAGCTTCGACTGAAGGCTATG
GTGACCCAGTTTTGCTTCGAGTACGATCAGTGAACACTGTTTACACCTCA
ACCTATCTCATCAAAAAGACACCATTGAACATGCATGCAGCAAAGGAGGC
TTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGATGATCTGCCAGAAC
ATCATTTCTTAGTCCATGAATTACAGAAACTTCACATCAAATCTGCTTGG
GTTGGATTAAACGACAAAGCTTACGAAAAAGTTTTCAGATGGGATGGTTC
AAATCTCCCAGGATTCAAAAAATGGTGTCCACACGAGCCAAACAATTTTG
GAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGAAATGTTTGAAC
GATCTTGGTTGCGCGCATGCGCGGccatacatttgtgaaatcaaCCAAAG
CAAAGTGACCAGTGACGTCACAGTCTAAATGATGAAGGTAGCAAGTATTT
TGGTCTTTTTGGCCATAGCAGCTTCGACTGAAGGCTATGGTGACCCAGTT
TTGCTTCGAGTACGATCAGTGAACACTGTTTACACCTCAACCTATCTCAT
CAAAAAGACACCATTGAACATGCATGCAGCAAAGGAGGCTTGTGCTAAAT
GTGGAGGTTTCTTGGCAACTATTGATGATCTGCCAGAACATCATTTCTTA
GTCCATGAATTACAGAAACTTCACATCAAATCTGCTTGGGTTGGATTAAA
CGACAAAGCTTACGAAAAAGTTTTCAGATGGGATGGTTCAAATCTCCCAG
GATTCAAAAAATGGTGTCCACACGAGCCAAACAATTTTGGAAACGCTGAA
GACTGTGTTGAATTGATCGCTGACAAGAAATGTTTGAACGATCTTGGTTG
CGCGCATGCGCGGccatacatttgtgaaatcaaCCAAAGCAAAGTGACCA
GTGACGTCACAGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065170-exon-scaffold_433-1491911889:180467..180535 | TCONS_00065170-exon-scaffold_433-1491911889:180467..180535 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1510915933:180467..180535 | TCONS_00065170-exon-scaffold_433-1510915933:180467..180535 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1575043694:180467..180535 | TCONS_00065170-exon-scaffold_433-1575043694:180467..180535 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1491911889:180903..180995 | TCONS_00065170-exon-scaffold_433-1491911889:180903..180995 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1510915933:180903..180995 | TCONS_00065170-exon-scaffold_433-1510915933:180903..180995 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1575043694:180903..180995 | TCONS_00065170-exon-scaffold_433-1575043694:180903..180995 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1491911889:181714..181879 | TCONS_00065170-exon-scaffold_433-1491911889:181714..181879 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1510915933:181714..181879 | TCONS_00065170-exon-scaffold_433-1510915933:181714..181879 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1575043694:181714..181879 | TCONS_00065170-exon-scaffold_433-1575043694:181714..181879 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1491911889:182395..182742 | TCONS_00065170-exon-scaffold_433-1491911889:182395..182742 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1510915933:182395..182742 | TCONS_00065170-exon-scaffold_433-1510915933:182395..182742 | Clytia hemisphaerica | exon |
| TCONS_00065170-exon-scaffold_433-1575043694:182395..182742 | TCONS_00065170-exon-scaffold_433-1575043694:182395..182742 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:180467..182742 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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