TCONS_00065202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065202
Unique NameTCONS_00065202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065202 ID=TCONS_00065202|Name=TCONS_00065202|organism=Clytia hemisphaerica|type=transcript|length=335bp
acccaaatttatcacgcctctcctaaactattcccttttctattgatctt
gtgtagacgataggatcttTGTAGTGACACAGCGAGTTTTAGTAGAGATC
ACCTAAACTTTTTTAATGGGAAAATTGACTCAAAGGGAAACTAGGggaac
tttttctaaaaaagctaaaatatttttgtagatCATTTATTGAGCTCCTT
GAAGTAGTTAATTTTTCAGTATATTATTTTATGATACATTACACCTTTTC
AGACTTTTGAatgctttttctttcaaatgcttGAAATTTAGCTGAAAATA
TCCTGAGGCTAACATTGTTTTTTAATTGTCTAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_433:236220..236554-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065202 ID=TCONS_00065202|Name=TCONS_00065202|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at scaffold_433:236220..236554- (Clytia hemisphaerica)
ACCCAAATTTATCACGCCTCTCCTAAACTATTCCCTTTTCTATTGATCTT
GTGTAGACGATAGGATCTTTGTAGTGACACAGCGAGTTTTAGTAGAGATC
ACCTAAACTTTTTTAATGGGAAAATTGACTCAAAGGGAAACTAGGGGAAC
TTTTTCTAAAAAAGCTAAAATATTTTTGTAGATCATTTATTGAGCTCCTT
GAAGTAGTTAATTTTTCAGTATATTATTTTATGATACATTACACCTTTTC
AGACTTTTGAATGCTTTTTCTTTCAAATGCTTGAAATTTAGCTGAAAATA
TCCTGAGGCTAACATTGTTTTTTAATTGTCTAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040878XLOC_040878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065202-exon-scaffold_433-1575043694:236220..236554TCONS_00065202-exon-scaffold_433-1575043694:236220..236554Clytia hemisphaericaexon
TCONS_00065202-exon-scaffold_433-1510915933:236220..236554TCONS_00065202-exon-scaffold_433-1510915933:236220..236554Clytia hemisphaericaexon
TCONS_00065202-exon-scaffold_433-1491911889:236220..236554TCONS_00065202-exon-scaffold_433-1491911889:236220..236554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:236220..236554 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.311898	3.42071	2.40039	2.96395	4.41032	1.45325	2.05728	0.285671	0	0.384574	1.36183	0	0.343156	0	0.216778	0.29931	0.313206	0.272475	0	0	0.596786	0.604608	0.270106	1.57044	0.824074	1.56258	1.27361
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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