TCONS_00065226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065226
Unique NameTCONS_00065226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065226 ID=TCONS_00065226|Name=TCONS_00065226|organism=Clytia hemisphaerica|type=transcript|length=1400bp
aatagtcaaattcagaaaaaactaagtccagaaatcagaaaaaacagagt
tagagataggaaatagagaaaaagaggAGAAGGGCGGAATTGGTGATNAA
CTGTTAGCGTGCAAGCCAAGTTGAAAGTTCTGAGAGCCAAGAGAAAAACT
GGAAAAGGAAATTGAAGTACGAGTGGATTTAACATGCTCCCATCAGTTTT
AGTCACAGGTTGCAACAAAGGAATTGGCTTGGAATTCATAAAACAGCTGG
TGGGTAAAACCTCCCACCTATTTGCAACATGTAGAACCCCCTCAAAtGAG
CTGTCCAAATTAGCAGAAGAGAATTCTAATCTACACATTTTGCATGTTGG
TAAGAATATTAAGTAACAAAGGATGATGACATCTTTGCAGCTGCTGAACA
AGTATCACATTTTGTGGAAGATGGCGGTTTACATTGTCTCATTAACAATG
CTGGTGTTGTGAATTATGAACATGCAAAGATGGAAAATTTGACATCAGAA
AGTCTTTTAAATACTTACCATATAAACGCTGTTGGTCCTGCCATGATGGT
TAAGGCATTCTTACCACTTTTAAGACAAGCTGCAACAAATTCTTCTTCAA
CTGCAATGCCTTGTGGCGTATTGAATATTAGCTCCAGAACTGGATCGATT
GAAGATAATGGTATGGGCAAGCTGTATGGCTCAAGGCTATCCAAAgtAGC
TTTAAACATGCTCACAAAAAACCTAAGCATAGAGTTGAAAGCAGACAATC
TCATAGCTGTGGCTTTGAATCCTGGATGGGTCAAGACAGAAAATGGTGGG
GAGAATGCGCTGATAACAGCGGAACAAAGTGTACATGGCATGCTCAGTGT
TTATAAGGGCTTAACAATGAAAGATTCAGGTGCTTTCCTGAGCTATGATG
GTTCAACAATACCTTGGTGatgcaacaaaatttttttattatttttcaat
gtaCATTTTTAAGTAATGTTTTTCTACACATATGCACTACACTATCTGAT
GATAAAATAGGACGTTCTCAAATGATTGGATGACATAAATAGAGTACTGC
AGGCTATCCTCGAATGCCCCCATATATACTACATCCCCCTATATAATATA
CACCTACCAAACCCGCACTATTTAAATTAGCGGTCTGTCAAccttttttt
aaccattttccaGCCATTTTCCATTATCAGATATGATGTTTTACAGATTT
GGTAATCCTGAGGAAACTGGATTACACACTATTTTGAAAATAGCGCAACT
ACTCTTAAGTGCCAAATAAATGGCCCCCCCCgtttaataatttttaaaaa
tatttttagctgtCAAATAGAAggcccttattttgctctaaatagcctga
ttttagcctatatttaccttattttggggttttcagaagtacaatttcca
Run BLAST on NCBI

transcript from alignment at scaffold_433:516819..523288-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065226 ID=TCONS_00065226|Name=TCONS_00065226|organism=Clytia hemisphaerica|type=transcript|length=6470bp|location=Sequence derived from alignment at scaffold_433:516819..523288- (Clytia hemisphaerica)
AATAGTCAAATTCAGAAAAAACTAAGTCCAGAAATCAGAAAAAACAGAGT
TAGAGATAGGAAATAGAGAAAAAGAGGAGAAGGGCGGAATTGGTGATNAA
CTGTTAGCGTGCAAGCCAAGTTGAAAGTTCTGAGAGCCAAGAGAAAAACT
GGAAAAGGAAATTGAAGTACGAGTGGATTTAACATGCTCCCATCAGTTTT
AGTCACAGGTTGCAACAAAGGAATTGGCTTGGAATTCATAAAACAGCTGG
TGGGTAAAACCTCCCACCTATTTGCAACATGTAGAACCCCCTCAAATGTA
AGCTTTTTCACATTTTTGTTTGACCTTGACACTTTTATTTGACTTGTCAG
ATTTTAGATGTATAACAATAGGGTGTCTCCACAAGGGTCTATGGGCATCA
GCAGAAACAACTATATTTGTTTGTGTTCGATTGCATTTGAATAACGTTTT
ATTGGTTCATAGACCTTTTCGCCGACGACCCACGCCACGGCATGGCCCGT
CGCCCGAACATGTTCGGTCCTGTTCGGACCATGCTCGGGCCACAAAAAAT
TATTATTGAATCGGCCCAAACATTTTGTTCGGACCATGTCCATAGGAATA
GTAGAATAGTAGAATTTAATTTTATTTACCTTTCCTGGTTTATCATCATC
CATTGTTAAATATTTTCATTAGATTATTAGACAAATTCAAAGTTCCAAAT
ACCAGTTTGATTCACAAAGCTGTATAACAGTACAAAAAAAAATTCCAGAA
AAATTCTGCTTCGAATAGGAGAAGACCACGAGAAAAGGGAACGGGATAAA
GAATAAAAAGAACACCATATATTATGTAAGATTCAAATCATTCTTTTTAA
TAATTTTCCTAACTTAATTGGAAAAAAGATGATTAACTTTTATATTTGAA
CAATATATATTTGAATAAAGATGAAGATTTTTAAATTTGTTTGCTAAAAT
AATGAATTTAAAATATAAATATTGGGTCCTGAAATTACATGCGGCAAGTT
TTCGAAAATCTGGCCCGAACATGGTCCGAAACTGCGCCATTTAAAAAAAG
TATTAATCAAGAGGCCCGAACATGTTCGGGCCATGCCGTGGGTCGTTTTC
GCCTCCCTTCCATCCGCCATATTCCAGACATAATTAATCAAACACAGTTC
GATTATAATCGAACAATCGAACTTTGTCGAACTTAATCGAACGACAAAAG
TTGCTAAAATTGTGAGTATTCGATTAAGTTCGACAAAACATATTAAGTTT
GACAAAGTTTGACAACGAGAAATGTTTGAAAAATTTGACAAAAAACTCCG
TTCGATAAAGTTCAACAACAAGGAAAGGTTCGACAAATTCGACAAAAAAC
TCCGTTCGAAAAAGTTCGACAACACAAAATGACCAAGTTCTTCAAAGTGT
TGTCAAAAGCTGGCAAAAATTACGAAAAATGACCTCCTTTGGGTACCAGC
CCCGGTGGGACCAATCTAGGCCTCTACAGCCCCCCACAGCCCTTCGGACC
GCTTTGGATACCCTCTGCCTTGCTTTCCCTCAAAGCCAGCACCATCCATC
AGTCATCCGAAGCCCTTAAAAGGCTTGGAAAGGCGGAAAGGCTTGAAATT
GGTCAAAATTGGAAAAAAAATGACCTCCTTTGGGTACCACTGCGGACGGC
CCCTGGGGGTCCTGGCCGGTGTGCCGGGGGGTCTGATCGGTGCTCAGTGG
TCAGGGGGGTGTAAGCGAACACGCCTGCCCCGTTGGGGGTCCTTCAAAAT
TCCTCAAAGTGCCATCAAAAGCCGGCAAAAGTTGTCAATAATGACCTCCT
CAATTGAGGCTGCTACACCCCTTTCTCACCAGGAAAAATCGATGGTGAGA
CCAATTGAGGCCTCTACAGCCCTCCATAGCCCCTGTATTTTTGCATACAT
CAAGATAACGGATGGAAATGCGAAAAGGTCTATTGATTTCAAATAGCTTT
ACTTTCAATCGATCTTCTATTATGTTGGATTAGTATGATTACGATTATGT
TTGATAAGTTTGATTGCAATTTAATTGGCCCACTCCTTTCTTTATACATA
GAGCTTTAGCGTGGGTGGCCATGGGAAAATTAAATAAGAGTGACTGCATA
AGTACCTTACAAGAAAGGCCATATATATTTTAGAAGGGCACTTTTTCCAG
TGTTTTTCCATTAAAAAGGCTGTTTTTACCAATATTTTAGTAATTTCAAG
AGGGGCAAGGTACGATAACTGGACCCTTATAGGGCATGAAAAATGACCTG
CATCAGTAAATAAATCAAATGAATGTAATCAAACATAATCGAATACAATC
AAACGTAACTGAAGCAATTGAATGGCAAATCCTGTGTAATATTCAATTAC
GACATTCGACAATTCAATCACAATTATTCAACTGCATTTGATTGTGTTCA
ATTGATTAGGTATTCGATTAATTTGATTGACACCGTCTGGCCATGGCAAC
AACAATGATGATAGCGACTTCAGAATTCACACAGCTTTTGTTGATGCCAA
ACCAAATGTTTCATTTTTTTGTGAATTTTGAACCCTTCTAACTTTTCTCT
ACCGTCAACTGCTCTAACTTGGGACGATTGGTCGAAACATACCGGGTGTC
TGTGAAAATACTTCCCCCTGTTTGATTCAATATTGCGAAAAAGTGAAAAA
ATATATTAGCTTTATTTTTTCTAAATCGTTTAGAGGAGGGTTTAACTTAA
ATTTTGGTATATCAAACTTTAACATTGCTTCATTAGATCAAAAGTTATGA
CAAAAAGAGTAAAAAAATTGTTGTCAAAAAGAGCACAAAAAGACGAAAAA
ACAAGGTATCAATTTACTTTTGATCTTCNGATAACTTTCACTGATAGTGC
GCCGTTTTTAATTTTTTTTATTCAAAATGACCGGATGCCGATTGAAGAAA
TAGAGAAAAAAGTTGCAATCATTGATGAACAATTATGTATGTCTCTGGAA
ATGGTTGAAAACATAGTTGCAGGTTGAAACTTTGTATGTTTATCAGAAAG
GAATTTAATAAGAACTTTAACACTATTACATTATTAAAATTTATTGTTCA
AGGAGCTGTCCAAATTAGCAGAAGAGAATTCTAATCTACACATTTTGCAT
GTTGGTAAGAATATTGTAAGTTTTCTCACTATATTTATAAAATAATGTAG
AATTAAAAAACTCTGGAGAAGATTTTCAACCAAAATTATAGAAAACAGTG
GTGTCTTATCATTTCATGGACAAGTTCTATTGAGTTTATTAAACTTAAAA
GTACCTAGAAGGGAATCTTTTGGATGGAAAACTAAGCAACTAATGTCACA
GGTTGGTTACCCAATTGTAGTTTTCACTCGAGAACAATGAAAAGAAACAA
TAGATTCAAAAGTTTACCACGTGGTAGCAAAATTTGAAGAAGGGAATCTT
TTGGATGGAAAACTAAGCAACTAATGTTACAGGTTGGTTACCCAATTGTG
GTTTTCACTCGAGAACAATGAAAAGAACCAATAGATTCGAAAGTGTTTAC
CACATGGTAGCAAAATAGAGTGCACTCTTTAAGCAAATGGACTACGTAAA
CATTTTCGAGCTTATCTACAATAGTGTGGTGGTTCCCCTTAATTTGAATA
GCATTGCCATCAAGGCAGAAGATCCAATCTCAAAATAAGTACATGAGAAA
ACTTCTTTTACTTTGCTAGCTTGAAATTTGAGTTTGTCCCCCTTTTTTCT
CTTGATCCTACCCAACTAAAAGAAAAAGGCCAGAATCTCAGAATTTTAAG
TTAGGAAAGCAAAAAAAGTCTCAGTTATCTCAACACTAATTTTGAGATTG
GATCCTCTGCCTCGATAGCAGTGATAGATGGATCCATTTTGATTTCATAG
AAGTAACAAAGGATGATGACATCTTTGCAGCTAAAGAACAAGTATCACAT
TTTGTGGAAGATGGCGGTTTACATTGTCTCATTAACAATGCTGGTGTTGT
GAATTATGAACATGCAAAGATGGAAAATTTGACATCAGAAAGTCTTTTAA
ATACTTACCATATAAACGCTGTTGGTCCTGCCATGATGGTTAAGGTAGAC
AATTTCTCTCATGCCTTGTCAGGGAGTCAAGAAAGTCTGGATAATAATTT
CTTTTTGTCTTCATTTTACAGTTCCTTGGTTGATTCTAGTTTTAACAAAA
CCCTGATTATAGCTTTCTATTTTCAGGCATTCTTACCACTTTTAAGACAA
GCTGCAACAAATTCTTCTTCAACTGCAATGCCTTGTGGCGTATTGAATAT
TAGCTCCAGAACTGGATCGATTGAAGATAATGGTATGGGCAAGCTGTATG
GCTCAAGGCTATCCAAAGTAAGCGCGATATTCTAAATAGAACATTTAGCA
TAATTTTAATAATATTTACGACTTCAGGTGAGCTTTCACGATGCTCAATG
GAAACTGGTAGTTACCATGCCCTTGTGCTTTTTTTCAGACGTGCCGATTT
TTGAATAAACGTATCGTCTCATTTATATTCTTTTATATCATTTATTTTCC
AGGGAGAAAGAAGATAACGAACTAGCTAACTAGCTATATTTTGTTTAAGA
TTTGTTCTTGTTTTCTATAAAAAAAATTTATTTTGTTTTGAAAAGAATTC
GAATGTCANTTCAACACTAATTTTGAGATTGGATCCTCTGCCTCGATAGC
AGCGATAGATGGATCCATTTTGATTTCATAGAAGTAACAAAGGATGATGA
CATCTTTGCAGCTGCTGAACAAGTATCACATTTTGTGGAAGATGGCGGTT
TACATTGTCTCATTAACAATGCTGGTGTTGTGAATTATGAACATGCAAAG
ATGGAAAATTTGACATCAGAAAGTCTTTTAAATACTTACCATATAAACGC
TGTTGGTCCTGCCATGATGGTTAAGGTAGACAATTTCTCTCATGCCTTGT
CAGGGAGTCAAGAAAGTCTGGATAATAATTTCTTTTTGTCTTCATTTTAC
AGTTCCTTGGTTGATTCTAGTTTTAACAAAACCCTGATTATAGCTTTCTA
TTTTCAGGCATTCTTACCACTTTTAAGACAAGCTGCAACAAATTCTTCTT
CAACTGCAATGCCTTGTGGCGTATTGAATATTAGCTCCAGAACTGGATCG
ATTGAAGATAATGGTATGGGCAAGCTGTATGGCTCAAGGCTATCCAAAGT
AAGCGCGATATTCTAAATAGAACATTTAGCATAATTTTAATAATATTTAC
GACTTCAGGTGAGCTTTCACGATGCTCAATGGAAACTGGTAGTTACCATG
CCCTTGTGCTTTTTTTCAGACGTGCCGATTTTTGAATAAACGTATCGTCT
CATTTATATTCTTTTATATCATTTATTTTCCAGGGAGAAAGAAGATAACG
AACTAGCTAACTAGCTATATTTTGTTTAAGATTTGTTCTTGTTTTCTATA
AAAAAAATTTATTTTGTTTTGAAAAGAATTCGAATGTCATTAGTAATCAA
ATAAGGTCGTCAATTACATTTGAAAATATATAAAAGAAAAGAGAAAAAAA
AGGGGTAAAAAGGGCAGAAATTAAAATTGCTTAATGTAGATGGGTATTTA
ATTTCAAAACAAAGGCCAAACGAAGTCTACAGGCTCTATCAACAAAAACA
TTCCGAAAACGAAAGAGTAACACATGTACAGACAGACAGACAGACAAACA
AACAAACAAACAAAGTGACATACAGACTACGGCTATTAATTTAACGTAGT
ATATAAATACAGTAAAACACTTTCAATCATATTCATTGTTCTTTGACCTA
TCTTTTTCATTTCAGGTAGCTTTAAACATGCTCACAAAAAACCTAAGCAT
AGAGTTGAAAGCAGACAATCTCATAGCTGTGGCTTTGAATCCTGGATGGG
TCAAGACAGAAAATGGTGGGGAGAATGCGCTGATAACAGCGGAACAAAGT
GTACATGGCATGCTCAGTGTTTATAAGGGCTTAACAATGAAAGATTCAGG
TGCTTTCCTGAGCTATGATGGTTCAACAATACCTTGGTGATGCAACAAAA
TTTTTTTATTATTTTTCAATGTACATTTTTAAGTAATGTTTTTCTACACA
TATGCACTACACTATCTGATGATAAAATAGGACGTTCTCAAATGATTGGA
TGACATAAATAGAGTACTGCAGGCTATCCTCGAATGCCCCCATATATACT
ACATCCCCCTATATAATATACACCTACCAAACCCGCACTATTTAAATTAG
CGGTCTGTCAACCTTTTTTTAACCATTTTCCAGCCATTTTCCATTATCAG
ATATGATGTTTTACAGATTTGGTAATCCTGAGGAAACTGGATTACACACT
ATTTTGAAAATAGCGCAACTACTCTTAAGTGCCAAATAAATGGCCCCCCC
CGTTTAATAATTTTTAAAAATATTTTTAGCTGTCAAATAGAAGGCCCTTA
TTTTGCTCTAAATAGCCTGATTTTAGCCTATATTTACCTTATTTTGGGGT
TTTCAGAAGTACAATTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040891XLOC_040891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065226-exon-scaffold_433-1575043694:522992..523288TCONS_00065226-exon-scaffold_433-1575043694:522992..523288Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1575043694:520174..520236TCONS_00065226-exon-scaffold_433-1575043694:520174..520236Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1575043694:518414..518607TCONS_00065226-exon-scaffold_433-1575043694:518414..518607Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1575043694:518141..518281TCONS_00065226-exon-scaffold_433-1575043694:518141..518281Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1575043694:516819..517523TCONS_00065226-exon-scaffold_433-1575043694:516819..517523Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1510915933:522992..523288TCONS_00065226-exon-scaffold_433-1510915933:522992..523288Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1510915933:520174..520236TCONS_00065226-exon-scaffold_433-1510915933:520174..520236Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1510915933:518414..518607TCONS_00065226-exon-scaffold_433-1510915933:518414..518607Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1510915933:518141..518281TCONS_00065226-exon-scaffold_433-1510915933:518141..518281Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1510915933:516819..517523TCONS_00065226-exon-scaffold_433-1510915933:516819..517523Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1491911889:522992..523288TCONS_00065226-exon-scaffold_433-1491911889:522992..523288Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1491911889:520174..520236TCONS_00065226-exon-scaffold_433-1491911889:520174..520236Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1491911889:518414..518607TCONS_00065226-exon-scaffold_433-1491911889:518414..518607Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1491911889:518141..518281TCONS_00065226-exon-scaffold_433-1491911889:518141..518281Clytia hemisphaericaexon
TCONS_00065226-exon-scaffold_433-1491911889:516819..517523TCONS_00065226-exon-scaffold_433-1491911889:516819..517523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:516819..523288 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5718	12.4866	9.72008	5.21288	8.25753	4.70831	4.90447	5.36571	2.86725	2.08119	1.56018	2.17645	1.49013	3.41017	2.21337	0.388195	4.36232	2.95872	0.753477	7.10619e-10	0.00312704	4.04289	6.38868	5.43954	5.10997	3.67048	1.91523	0.0858288	2.41318	8.02404
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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