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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065245 ID=TCONS_00065245|Name=TCONS_00065245|organism=Clytia hemisphaerica|type=transcript|length=234bp
AAATGATTGAACAGAAAAGTTAGCTGAAGACAGAAAAAAGTTTACTTTCG
TTGGAATTTTCTGGTTTGCGACGAACGAGGTGATGATTGGGCAGATGAAG
TACAATTAAGACTGAGTGATACGAGAGCAGCGTCCGATTTACACGCTGCT
TTTGGGAGGTACCACAATGATTGTAGACTAAAGTTTATGGCCGAGAGGAA
CGTTACCGCTGCGCAAAGAAAGCTTGAATCACAC Run BLAST on NCBI transcript from alignment at scaffold_434:23304..24620- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065245 ID=TCONS_00065245|Name=TCONS_00065245|organism=Clytia hemisphaerica|type=transcript|length=1317bp|location=Sequence derived from alignment at scaffold_434:23304..24620- (Clytia hemisphaerica)
AAATGATTGAACAGAAAAGTTAGCTGAAGACAGAAAAAAGTTTACTTTCG
TTGGAATTTTCTGGTAAGTCTTAAAATTCGTTCTATTAAGCTTTAGTAAA
GATCTTTTAAATTAGCATTAGAAGATGCTTTCTAACCAGCTCCAGAGGCT
CAAAATCTTGATCAAGGAATACTTTGATTTCAAAGTTTCTCATTTTGCCC
GTTTAAGGTATGGCTTGCATCTTCACAGATTATCTCAGTACTTGCAAGGG
AGATAATGATAGCGATTTAATACAGATTTCTGAGCAAAGATTATTATCAG
TCAAGGATGCATGCTCAAGTAGAGGAGATGCCAACTTAAATGTTACACTA
GAAAGCTCTGAACTATTTACTGCACACAGAAATTGTTTATCTACGTATAC
ATCAAAATCACATATTGACCGTCACTTGAAGCACAAAGAAACAAAGGACA
ACCCTACGCAACCAAAACGAAGGAAGATTTCCCGGAAGCCTTTCTTCTGG
AAAGAACAGTGTTTCTTTTGCGGGGAGAAATGCGAAGTAAAAGTCGATAA
GAGGAATCCTAGCCGGTGGAGAGAATCGTATGAATGTAGAACAGCAGACA
GGGGAAAAGGATAAGATACTTTTAAGGACGCTATCTTAAAGGTAACTATT
TTTGCCATTATAGTCTTTTTTAGACAACAAGTGTAACAAGTGTAACACGT
GTAATTGATAGACGTTTTAGATCTTGTGGCATAAATCTTGGCTTAGCCCC
GAAGATCTAAAATGATGACACACTTATTTACAGGTTTGCGACGAACGAGG
TGATGATTGGGCAGATGAAGTACAATTAAGACTGAGTGATACGAGAGCAG
CGTCCGATTTACACGCTGCTTTTGGGAGGTATTTTTTACCACTTGACTTG
ACTCGTTGAAGTTTCTGAGAGGGACAGACGAATCAACTTCTAATTTTGTG
GACCAGGGGGGCTTCAACGCATGGAATCTTTCTATCAATCGAAAGAGTTT
GATGATAATTTTATTTCAATTTCAATAGTTAACTTATAACTCAAAATAAG
TCGAAAATTACCTATTTCATATCTTAGGACTATTTTATCTCTTAGGATGA
TATTCTCCTCTCAGCAAATTATAATAACTTTGCCATAGGTACCACAATGA
TTGTAGACTAAAGTTTATGGCCGAGAGGAACGTTACCGCTGCGCAAAGAA
AGCTTGAATCACACGACCCTGTAGATGATGCATNGCCATAGGTACCACAA
TGATTGTAGACTAAAGTTTATGGCCGAGAGGAACGTTACCGCTGCGCAAA
GAAAGCTTGAATCACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065245-exon-scaffold_434-1575043694:24558..24620 | TCONS_00065245-exon-scaffold_434-1575043694:24558..24620 | Clytia hemisphaerica | exon |
| TCONS_00065245-exon-scaffold_434-1575043694:23743..23837 | TCONS_00065245-exon-scaffold_434-1575043694:23743..23837 | Clytia hemisphaerica | exon |
| TCONS_00065245-exon-scaffold_434-1575043694:23304..23379 | TCONS_00065245-exon-scaffold_434-1575043694:23304..23379 | Clytia hemisphaerica | exon |
| TCONS_00065245-exon-scaffold_434-1510915933:24558..24620 | TCONS_00065245-exon-scaffold_434-1510915933:24558..24620 | Clytia hemisphaerica | exon |
| TCONS_00065245-exon-scaffold_434-1510915933:23743..23837 | TCONS_00065245-exon-scaffold_434-1510915933:23743..23837 | Clytia hemisphaerica | exon |
| TCONS_00065245-exon-scaffold_434-1510915933:23304..23379 | TCONS_00065245-exon-scaffold_434-1510915933:23304..23379 | Clytia hemisphaerica | exon |
| TCONS_00065245-exon-scaffold_434-1491911889:24558..24620 | TCONS_00065245-exon-scaffold_434-1491911889:24558..24620 | Clytia hemisphaerica | exon |
| TCONS_00065245-exon-scaffold_434-1491911889:23743..23837 | TCONS_00065245-exon-scaffold_434-1491911889:23743..23837 | Clytia hemisphaerica | exon |
| TCONS_00065245-exon-scaffold_434-1491911889:23304..23379 | TCONS_00065245-exon-scaffold_434-1491911889:23304..23379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_434 | supercontig | scaffold_434:23304..24620 - |
Blast
The following BLAST results are available for this feature:
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