TCONS_00065249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065249
Unique NameTCONS_00065249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065249 ID=TCONS_00065249|Name=TCONS_00065249|organism=Clytia hemisphaerica|type=transcript|length=410bp
ATCGAAATTTATCAGATTTATCAAAATCACGGTGGTTCACAGTTGACGAG
AAAGACTCTTATCGAGAAGCTCGTCAGAAGTTTTTCAAATGAGATAATAT
TACTTTCTTCTCCTGGAATAGCACATGTATTGGTGTTTCGAAAACACGCA
TCAACCGTAATGAAAATTACCGAATCAGACGATGATCCAATCGACGTGAA
GCGGATTGCCAATCGGATCAAAAAGGAGATTTTAGATATCGATTTCAACA
CAACCGAATACCAGCGCCGAATAAACAAATCTATCGCCAAAGAACCCGTG
AGTGAAACcttctttcaaaaatatcacAAGATCTGGCCGAGAATAAATTA
CCATCTATACTCATCGGAAACATCATAACCAGTATCGTAAGAAAGAAACC
AACTACGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_434:22822..23231

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065249 ID=TCONS_00065249|Name=TCONS_00065249|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at scaffold_434:22822..23231 (Clytia hemisphaerica)
CAGCGTAGTTGGTTTCTTTCTTACGATACTGGTTATGATGTTTCCGATGA
GTATAGATGGTAATTTATTCTCGGCCAGATCTTgtgatatttttgaaaga
agGTTTCACTCACGGGTTCTTTGGCGATAGATTTGTTTATTCGGCGCTGG
TATTCGGTTGTGTTGAAATCGATATCTAAAATCTCCTTTTTGATCCGATT
GGCAATCCGCTTCACGTCGATTGGATCATCGTCTGATTCGGTAATTTTCA
TTACGGTTGATGCGTGTTTTCGAAACACCAATACATGTGCTATTCCAGGA
GAAGAAAGTAATATTATCTCATTTGAAAAACTTCTGACGAGCTTCTCGAT
AAGAGTCTTTCTCGTCAACTGTGAACCACCGTGATTTTGATAAATCTGAT
AAATTTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040910XLOC_040910Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065249-exon-scaffold_434-1491911889:22822..23231TCONS_00065249-exon-scaffold_434-1491911889:22822..23231Clytia hemisphaericaexon
TCONS_00065249-exon-scaffold_434-1510915933:22822..23231TCONS_00065249-exon-scaffold_434-1510915933:22822..23231Clytia hemisphaericaexon
TCONS_00065249-exon-scaffold_434-1575043694:22822..23231TCONS_00065249-exon-scaffold_434-1575043694:22822..23231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_434supercontigscaffold_434:22822..23231 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05904	0.860607	0.799397	1.56417	0	0.56428	0.68078	0.637338	0.89243	0.736946	0	0.470209	1.17389	1.341	1.20271	1.29069	0.265005	2.58041	1.12578	0.981706	1.53591	1.2486	0.607136	0.551974	0.758027	0.507391	0.9681	0.258296	0.587724	0.997997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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