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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065263 ID=TCONS_00065263|Name=TCONS_00065263|organism=Clytia hemisphaerica|type=transcript|length=3875bpRun BLAST on NCBI protein sequence of TCONS_00065263-protein >TCONS_00065263-protein ID=TCONS_00065263-protein|Name=TCONS_00065263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1062bp MVLLVFLIDTSASMNQRTCLGTSYLDLAKGAVESFIKIRARDPVNAKGDRRun BLAST on NCBI transcript from alignment at scaffold_435:327594..349893+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065263 ID=TCONS_00065263|Name=TCONS_00065263|organism=Clytia hemisphaerica|type=transcript|length=22300bp|location=Sequence derived from alignment at scaffold_435:327594..349893+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_435:327594..349893+ >TCONS_00065263 ID=TCONS_00065263|Name=TCONS_00065263|organism=Clytia hemisphaerica|type=CDS|length=57402bp|location=Sequence derived from alignment at scaffold_435:327594..349893+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065263 vs. Swiss-Prot (Human)
Match: INT6 (Integrator complex subunit 6 OS=Homo sapiens GN=INTS6 PE=1 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 3.223e-83 Identity = 189/428 (44.16%), Postives = 256/428 (59.81%), Query Frame = 1
Query: 1348 WHNQHRLIYVR---KGKGSVCHWPIPESFWPDPAATRIPARNSHPIVKFVCKPVDAVVGNLSYNLPFDKYELEPSPLTQNILERRMANTAWQTFISGSSPDSEIGYPFGYLKASTNFQTVNLFVLPYNYPVILPLLDDLFQIHKCKPSVSWKQCFQEYLQTVPSYYYDPLRHALNSMKAPTNLIPDHMAGALSYSVSTYLKKLKHESKARADRYLQQ--KKDQDNVPPAEIPRVPQLNDGKLRDFKELLIHXXXXXXXXXXXXTNSGDSKPFDKRKIPKVLAQKLTIETFRNPFVIPYGDIIDHVNRMRLQFFHMSATSSATSDKTLADEEQRHDVAITAMGNFQDHLQQNKS-LREVDPSQ-IRVHTFGNPFKLKQQEQANQAVIAVDEADVNENMPLGANANQRKRSGDIMASLQK-GKRKRSETP 2607
WH+ H+LIYVR K + HWP+PESFWPD + +P R SHP+VKF C + +V + LPFDKYELEPSPLTQ ILER+ T WQ ++S S+ SE+G+PFGYLKAST VNLFV+PYNYPV+LPLLDDLF++HK KP++ W+Q F+ YL+T+P YY PL+ A+ M AP NLI D M LSYSV +YLKKL ++K +DR + KK R L+ +DF++LL S + N + F +L + L +TFRN + IP +++DH+ RMR + +T + DE+Q H V I MGN+Q++L+Q S LRE+DP Q R+HTFGNPFKL ++ + +DEAD P N+ KR G+ ++Q KR+R +P
Sbjct: 261 WHSCHKLIYVRPNPKTGVPIGHWPVPESFWPDQNSPTLPPRTSHPVVKFSCTDCEPMVID---KLPFDKYELEPSPLTQFILERKSPQTCWQVYVSNSAKYSELGHPFGYLKASTALNCVNLFVMPYNYPVLLPLLDDLFKVHKAKPTLKWRQSFESYLKTMPPYYLGPLKKAVRMMGAP-NLIADSMEYGLSYSVISYLKKLSQQAKIESDRVIGSVGKKVVQETGIKVRSRSHGLSMAYRKDFQQLL-QGISEDVPHRLLDLNMKEYTGFQV----ALLNKDLKPQTFRNAYDIPRRNLLDHLTRMRSNL--LKSTRRFLKGQ---DEDQVHSVPIAQMGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKG------MMIDEADEFVAGP----QNKHKRPGE--PNMQGIPKRRRCMSP 662 HSP 2 Score: 259.61 bits (662), Expect = 8.525e-72 Identity = 130/253 (51.38%), Postives = 181/253 (71.54%), Query Frame = 1
Query: 205 MVLLVFLIDTSASMNQRTCLGTSYLDLAKGAVESFIKIRARDPVNAKGDRYMLVTYDENSKSVKAGWKGVNLQMFMTELKNLDGFNLSDVGRALKESFDLLNINRLHMGLDNYGMGRNPFYLEPAIILLLTDGCAPMDPNGMIKEISIPTHDLLPGAELTNELYRWDQRLFTLQMKIPGFAQPLNDKHLANTP-EDVPLSTLCDLTGGKLYNIGGYKQLLQSMESIAQKIITPGVVLNFAMHGPDDMIQEDVQ 960
M +L+FLIDTSASMNQR+ LGT+YLD AKGAVE+F+K+RARDP ++GDRYMLVT++E ++KAGWK N FM ELKNL L+ +G++L+ +FDLLN+NRL G+DNYG GRNPF+LEPAII+ +TDG +G+ E+ +P + LPG+ELT E +RWDQRLF L +++PG + + L P +D ++ +C++TGG+ Y++ + L Q +ES+ QK+ + GVV+NF GPD ED Q
Sbjct: 1 MPILLFLIDTSASMNQRSHLGTTYLDTAKGAVETFMKLRARDPA-SRGDRYMLVTFEEPPYAIKAGWKE-NHATFMNELKNLQAEGLTTLGQSLRTAFDLLNLNRLVTGIDNYGQGRNPFFLEPAIIITITDGSKLTTTSGVQDELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPG-TMSVESEQLTGVPLDDSAITPMCEVTGGRSYSVCSPRMLNQCLESLVQKVQS-GVVINFEKAGPDPSPVEDGQ 249 The following BLAST results are available for this feature:
BLAST of TCONS_00065263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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