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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065266 ID=TCONS_00065266|Name=TCONS_00065266|organism=Clytia hemisphaerica|type=transcript|length=2499bp
TTCTGAATAGTCCTTTTGGCAGCTTAGCTTTTCtgctcttttttcttctt
caattttttttttgaatagaaaAGAAAGGGTTTGGgtataagtagagaac
aaacaCAATAGGTTATAAACTattctttctttctttgattcGATTATTAA
TTtgaatgaagaaattttcatctttatttttttcatagctGACATTTTAA
ATGAATGCGAACACCGGCAATCAAAGTATTGAAAGAAGAACGCCTTTACT
ATTGAAAGCAGTTATTTAGAGTATtgttttcttacaacaataGATTATTA
AAATGGATACAATAAAAACAGAAGAAAGTTGTTTTGAAGAATAAGTATAA
TAAAACAAGTTGAAGAGGAGGAGGATTACTTCAGAAGAAGAGTTTTCAAA
AGTTGAAGCATCTTTTTGTAAAGAACTTTCATCATCATCCATCAAAAGGA
GAATACCAACTATCTTATCTATCATTTGGTGGAAGGAAGAAGAAGGAATC
TTTTGTTCGACTTTCGATTGAGGGCGACATACGATAAGACGAAGACGTAC
ACACTTGATGAACTGATGGAGATGTCAAACTTGGAACCAGCTGGTCATCA
TGCTAAACCAAATCACATCAAACGACCGATGAACTCGTTCATGGTTTGGT
CGAGAATGGAACgcaagcgtatcagtgaagaaAATCCGAAACTTCACAAT
TCAGAGATCTCCAAACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGA
GGAACGAAAACCGTTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACA
TCCAAGAACATCCTGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTG
TCTGTCCCTACACAACATCATGTTCGTAAACATCAATCTACGGCTGCCGG
CAAAACAGTACCCATTCCTATTCCTGAATATATACCATCTAGAAGTGGTT
CACGTCCTGCAGTGGTCCCTGTGTATTACCATAGTCCGCACTATATTCAA
CATCCTGGATCCACACGTGAAGGCCATCCTGTTCACTATCCAACTACCGC
CCGTGAAGTCCGTTACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTT
CAAGAAGCCCAGTTGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTT
GTTTATCGATCATATAGCCCACCTCCTCAACCTAGAGAAGCGTACTACTA
TCAATCAAGATCAGAGGCTAAACAGAATAGTTACCATGACGATGAGCCAT
CCGACGGCGAAAATAAAACTGACACAAACACTGAGGAGACGAACAATAAC
AACACCGAGAAAAAATCGTCGTCTGGCGAAAATAACCATGACGAAAACGA
CAATGTGAAAGCCTCGACAACGACTGTAACGAAACCACGTAAAAAGGGCG
TCGACGATTTATTAGGCTTGAAATTACGAAAACAAGCGCAACAGAAAGAA
CAAGAGGAAGAGAGCGAGAAAGAGAAGAATGAACGTAAAGAAGAAGCAAA
TACAACTGTCGAAAAACGCGAATCTCGTAACAGCGGCAGCAAACCAGTGT
ATTACAAATATGAACGTTATACGTCGCCGCCTCCTCCCTCACACCATCGA
GAATATAGACAGGGTTCCTCCTATATGGTACCCGTCCCAATCGTTCTTCA
TCCTCACTCCTCCCATGGAGAGATCTGTTACAAGGACTGCTGTATGGTCC
CTGCTACCTCTTACTACCCACACCACCCTCATGAAGGGGTCGAATACAGA
CGTACATATAGTAGTGACAAAACAAGATGCTACAGTCCTGATTACGAAAG
TGGTAGCTCTAAAAAGACTTATGTTGTATATGGGGAGCGGCCACCTTCTT
CCTCCCCTCCTACCCCTATGGTAGCTGCCAGGAGCAGGTCTCCCTCTCCA
CCGCAACAGACTGAAAAAAGGGAGAAGACTCCCCCTTCAAAAGAGAAGTC
ACCTCAATCTTCACCTAAAGACACTGGAAATGAAACAGACTAAATAAAAG
TTTCAGAGATTTCCTCCTTTCCATCAACAATTTGGTCGCGATAAACTCTC
TTTCctttttttgtatatatttacTGCATTTGTGTTTTTCCTCATTTACC
TTACCACAAAAACcgataattttttcctgcttttGTTTATATTCAAGATT
TCGTTGTTAAAAGATTCACATGATATAGAAACAGCGTTTTTTCACCCTAC
AGATTTTCATATTTGCCTTTTAGAATTCACTATTTGTCTTcgctgttttt
gtttttgttttgtttgttcgTACCCAGTTATTTCAGCAAATGGCCATAAG
ATATTGAGAAATCTGCTTGTACTTTTTCTGAAGGGACtatgaatacacgc
tttttggacctacccctGTGGGGTGGAGGTCCTATAAATTCACCTCTGTC
CGTCCGTCCGTTCGTTACCAGCTTTTCTCGAGATTgaatcataggaatca
tttgatttttggtacaaaggtgcaaaatggtggtggccaaaatgtgacg Run BLAST on NCBI transcript from alignment at scaffold_435:349954..356405+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065266 ID=TCONS_00065266|Name=TCONS_00065266|organism=Clytia hemisphaerica|type=transcript|length=6452bp|location=Sequence derived from alignment at scaffold_435:349954..356405+ (Clytia hemisphaerica)
TTCTGAATAGTCCTTTTGGCAGCTTAGCTTTTCtgctcttttttcttctt
caattttttttttgaatagaaaAGAAAGGGTTTGGgtataagtagagaac
aaacaCAATAGGTTATAAACTattctttctttctttgattcGATTATTAA
TTtgaatgaagaaattttcatctttatttttttcatagctGACATTTTAA
ATGAATGCGAACACCGGCAATCAAAGTATTGAAAGAAGAACGCCTTTACT
ATTGAAAGCAGTTATTTAGAGTATtgttttcttacaacaataGATTATTA
AAATGGATACAATAAAAACAGAAGAAAGTTGTTTTGAAGAATAAGTATAA
TAAAACAAGTTGAAGAGGAGGAGGATTACTTCAGAAGAAGAGTTTTCAAA
AGTTGAAGCATCTTTTTGTAAAGAACTTTCATCATCATCCATCAAAAGGA
GAATACCAACTATCTTATCTATCATTTGGTGGAAGGAAGAAGAAGGAATC
TTTTGTTCGACTTTCGATTGAGGTAAGacatttttatgtattttttcttt
tttttaatatgtATAGAAAAGGTTGTAAGAAAAACTTTTCCCCTTTTATN
CCAACATTCAACGGTATAAAAACAGTATTTTTTAAGAGGGTCGTTTTCTT
ATTATCtgatgaaaaaaagagaaaatcactTTTGACAGATTGAAAATTAG
TGAAAGGatccttcttttttttttcattttatttaaatGGGAAGAAAAAA
TAGCTTCTTTTGTTATGCTTACGATTCGCAAAACGTCCTCTATTCTTTTG
TCTTCTATATGTTTTCTTAAACCATTGGCTATTATATTCCATTTTTCTTG
TGCtgtttttataataataacTCTGAGGTTAATAAATACTTATCGAGCAA
CAATAGAAAagactcaattttctttttaaatccaAACTCTGTATTATGCT
ATTATTTACCTTTGTGTTTTGTTCTCTATTGTTTATCAATGACTAAGATT
TATGTTGGATTTATAacaactttcttttcttttcacaaaaaaacctCGTT
ATTACAAGCTGTGTGTGTAGTGTTGAGTTGAGGAGAGGAGTCGTCGAATA
TACGAAGCGACGAGAAAAATTTTGGATGGAAAAAAAGAATTCATTTCTCA
TAAATGATAAGAAGTTGATTGACctaaacacaaaaaaataactttcagaA
ATGTAAgcagatctttttttttttgttttcttttctctgATAAAAAAGTC
TTTCCTTTTGATACAACAATATTGAAGTTACTTCCTCTTACTTAAGCTCA
ACTGAAATTTTCTTCTAGATACTTTAATATTAGTTACCCTTCTAACCTGA
ATTTCCTACAGATATTTTCTCGCACAAATTCCGCTGACTTGTTCTCTAGA
TCCAAGTTAATCTTAATTTTAATCACAAGGAGAACATTTTATTTAGTCCC
CTTGTCATTGAGAAGTATATCATCCTCCCATCATCCCATGGATAGGAAAG
CTATGATAGAATTAACTGTTTAAGTCTCGTGAAACTATTAAGTTTAAAAC
TAAAATGAAACTCACTTTTTAACCTCTGACCATAACCACTAATTACCTTG
AAAGCCTATAATTaaatctgtaaaatacaacCTCAGACGGTCAGAGAGAG
ACGAGAGAGATACATAACAAAACCCTCAAAGTTTCTTTCTGGTGACCTGG
AAGTGTTGTTCCAATGTTGTGGCTATGATTTCCACtcaaattatcaattt
tacTTATAAGAATAGATCATTATCAAAAGTTTAGCTTTTAAAAGCTCTTC
CTGttcaaaattattcttataaaaaactgatATTTTATTAATACCTGACA
CTCGGTAACTAATTACTTGTTCCCTCATTGTCTTACCATTCGCGATTTGT
TATAAGATTAGAAACCGTTTCTCAGGCTCCTTAAATTAAGACTAAATTCT
GATCGTAATAAATGTAATGCTGCCATGTTGAGTGAAAAGATCGGTTGGAA
AAGTATCGCTCTAAACTTTTTTTATCGTCGAAATACGTATCTATCGTATT
TCCAAGCTTtccaaagtagtatttcttatgaaaaatacaTTGTCAACACA
TTAAAAATGTATCAATTGATATTGCTCGACTGAACTTAGCAGCAGCCGTT
TTTCAAATTACTGATGAATGCTCTTTCGTTGCCTACccttttgacttttt
aaagagGTTGCACAAAAGCTCTGATTTCTTATATAAAACCTTTACGAGTC
AATCTTAAGTGAATCAATGGTTTTTTGTTCGTCAatagaaacaaattttt
atgatGTTGCTTGACAAAAGGTTgcttttacctttttttatcCTAGCTTG
TAAAAGAAACTAAATATTCTGTTGTAGAGATGAAATGATTTATAACGGTA
GAACTTCTTGTAAAACCATTCATTTCTTTTCTCTTTAGTTCTTCAGTGTT
CTTCATATGAATGGTTTTATGAAGATGTCGACTGTTGTGAATCATGCTTA
TCCTAAACacagtttttgtttttcttagcATAGAATAAAGCGAGGCGATT
ATGATTCAACATTAAAGTTAAATACAATGAAATGAGAAAGTTGTGGATTT
ATACTCTACTggttcatcaaagtcactcaaTAAGAAAGATCGAGTGGTGT
TTTCATTAGAGTGAAATCTCTCCTATATTTATTGTTTGTGCACGCTTATA
ACAAAATCTGTTATAGGGATGCGTATGCAGCCTATGTATAATTTGACTTC
TTTCTATCATTGAACACCGTTCCGCTCTTTCTCATCCTTCAGGGCGACAT
ACGATAAGACGAAGACGTACACACTTGATGAACTGATGGAGATGTCAAAC
TTGGAACCAGCTGGTCATCATGCTAAACCAAATCACATCAAACGACCGAT
GAACTCGTTCATGGTAAGAAGCAGATTCATATCCCTCGGATgttgttaac
ttttttttagttttaagccttaaaatgttcttaacatgctcttgTTATCG
CCGTTTTGTGAGCACTTTTGTtcatttccctaagaaatcgggtcTTATAG
GGTCtgcaaaagccttaaaatgttcttaactggTTCTTAGTAtattggcc
atcgaagccttatgttcttataaaaaatggcTATATCATTGAGAGGATAA
TCGAAATGTTTTGCCATTAATGAAATGGGGGTGTACTTACGCAAAATGGG
AGTTGGTTATGTGCGAGGTGTAAGGGTCTTGAAAGACTCTCGCAGAggtt
taaaaagcaatttagtcTAATAAGGTTCCAAGATTACGATACGCTCGGAC
ATAACCGTCTCCTCAAAAACACAACTTCTTCAAGGAGttcaatattttac
aaatacatTACTTATTTCTAGCATATCTTTAAGTTTTCTACTAAGAGCTT
TTACAACTCAATTGGATTGGATTCTCACACTAGATAAATAGCACTTTAAT
TTAGGATAAATCTTTCTTCCATTCAAACTTTCTTAAGCTTGAAAAACAAG
AGCTGCAAAGGTTTCGAGCTGTAGatgttttcagaaaatgaatATTTCTC
TTCTATTCAAACAGGTTTGGTCGAGAATGGAACgcaagcgtatcagtgaa
gaaAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCTTGGTGCTTC
ATGGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTGAAGAGGCCA
AAAGATTACGTCAGATTCACATCCAAGAACATCCTGAGTATAAGTATCGT
CCACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCATGTTCGTAA
ACATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTATTCCTGAAT
ATATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCTGTGTATTAC
CATAGTCCGCACTATATTCAACATCCTGGATCCACACGTGAAGGCCATCC
TGTTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACCGCCCTCGAA
GTCCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGTGATAGAGAG
TACCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCCACCTCCTCA
ACCTAGGNTAACTGGTTCTTAGTAtattggccatcgaagccttatgttct
tataaaaaatggcTATATCATTGAGAGGATAATCGAAATGTTTTGCCATT
AATGAAATGGGGGTGTACTTACGCAAAATGGGAGTTGGTTATGTGCGAGG
TGTAAGGGTCTTGAAAGACTCTCGCAGAggtttaaaaagcaatttagtcT
AATAAGGTTCCAAGATTACGATACGCTCGGACATAACCGTCTCCTCAAAA
ACACAACTTCTTCAAGGAGtttaatattttacaaatacatTACTTATTTC
TAGCATATCTTTAAGTTTTCTACTAAGAGCTTTTACAACTCAATTGGATT
GGATTCTCACACTAGATAAATAGCACTTTAATTTAAGATAAATCTTTCTT
CCATTCAAACTTTCTTAAGCTTGAAAAACAAGAGCTGCAAAGGTTTCGAG
CTGTAGatgttttcagaaaatgaatATTTCTCTTCTATTCAAACAGGTTT
GGTCGAGAATGGAACgcaagcgtatcagtgaagaaAATCCGAAACTTCAC
AATTCAGAGATCTCCAAACGTCTTGGTGCTTCATGGAAAATGTTATCTGA
AGAGGAACGAAAACCGTTCGCTGAAGAGGCCAAAAGATTACGTCAGATTC
ACATCCAAGAACATCCTGAGTATAAGTATCGTCCACGACGGAAGCCGAAA
CTGTCTGTCCCTACACAACATCATGTTCGTAAACATCAATCTACGGCTGC
CGGCAAAACAGTACCCATTCCTATTCCTGAATATATACCATCTAGAAGTG
GTTCACGTCCTGCAGTGGTCCCTGTGTATTACCATAGTCCGCACTATATT
CAACATCCTGGATCCACACGTGAAGGCCATCCTGTTCACTATCCAACTAC
CGCCCGTGAAGTCCGTTACTACCGCCCTCGAAGTCCAGATTATAACGGGC
GTTCAAGAAGCCCAGTTGATCGTGATAGAGAGTACCGCCATTCACCGGGC
GTTGTTTATCGATCATATAGCCCACCTCCTCAACCTAGAGAAGCGTACTA
CTATCAATCAAGATCAGAGGCTAAACAGAATAGTTACCATGACGATGAGC
CATCCGACGGCGAAAATAAAACTGACACAAACACTGAGGAGACGAACAAT
AACAACACCGAGAAAAAATCGTCGTCTGGCGAAAATAACCATGACGAAAA
CGACAATGTGAAAGCCTCGACAACGACTGTAACGAAACCACGTAAAAAGG
GCGTCGACGATTTATTAGGCTTGAAATTACGAAAACAAGCGCAACAGAAA
GAACAAGAGGAAGAGAGCGAGAAAGAGAAGAATGAACGTAAAGAAGAAGC
AAATACAACTGTCGAAAAACGCGAATCTCGTAACAGCGGCAGCAAACCAG
TGTATTACAAATATGAACGTTATACGTCGCCGCCTCCTCCCTCACACCAT
CGAGAATATAGACAGGGTTCCTCCTATATGGTACCCGTCCCAATCGTTCT
TCATCCTCACTCCTCCCATGGAGAGATCTGTTACAAGGACTGCTGTATGG
TCCCTGCTACCTCTTACTACCCACACCACCCTCATGAAGGGGTCGAATAC
AGACGTACATATAGTAGTGACAAAACAAGATGCTACAGTCCTGATTACGA
AAGTGGTAGCTCTAAAAAGACTTATGTTGTATATGGGGAGCGGCCACCTT
CTTCCTCCCCTCCTACCCCTATGGTAGCTGCCAGGAGCAGGTCTCCCTCT
CCACCGCAACAGACTGAAAAAAGGGAGAAGACTCCCCCTTCAAAAGAGAA
GTCACCTCAATCTTCACCTAAAGACACTGGAAATGAAACAGACTAAATAA
AAGTTTCAGAGATTTCCTCCTTTCCATCAACAATTTGGTCGCGATAAACT
CTCTTTCctttttttgtatatatttacTGCATTTGTGTTTTTCCTCATTT
ACCTTACCACAAAAACcgataattttttcctgcttttGTTTATATTCAAG
ATTTCGTTGTTAAAAGATTCACATGATATAGAAACAGCGTTTTTTCACCC
TACAGATTTTCATATTTGCCTTTTAGAATTCACTATTTGTCTTcgctgtt
tttgtttttgttttgtttgttcgTACCCAGTTATTTCAGCAAATGGCCAT
AAGATATTGAGAAATCTGCTTGTACTTTTTCTGAAGGGACtatgaataca
cgctttttggacctacccctGTGGGGTGGAGGTCCTATAAATTCACCTCT
GTCCGTCCGTCCGTTCGTTACCAGCTTTTCTCGAGATTgaatcataggaa
tcatttgatttttggtacaaaggtgcaaaatggtggtggccaaaatgtga
cg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065266-exon-scaffold_435-1491911889:349954..350475 | TCONS_00065266-exon-scaffold_435-1491911889:349954..350475 | Clytia hemisphaerica | exon |
| TCONS_00065266-exon-scaffold_435-1510915933:349954..350475 | TCONS_00065266-exon-scaffold_435-1510915933:349954..350475 | Clytia hemisphaerica | exon |
| TCONS_00065266-exon-scaffold_435-1575043694:349954..350475 | TCONS_00065266-exon-scaffold_435-1575043694:349954..350475 | Clytia hemisphaerica | exon |
| TCONS_00065266-exon-scaffold_435-1491911889:352746..352866 | TCONS_00065266-exon-scaffold_435-1491911889:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065266-exon-scaffold_435-1510915933:352746..352866 | TCONS_00065266-exon-scaffold_435-1510915933:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065266-exon-scaffold_435-1575043694:352746..352866 | TCONS_00065266-exon-scaffold_435-1575043694:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065266-exon-scaffold_435-1491911889:354550..356405 | TCONS_00065266-exon-scaffold_435-1491911889:354550..356405 | Clytia hemisphaerica | exon |
| TCONS_00065266-exon-scaffold_435-1510915933:354550..356405 | TCONS_00065266-exon-scaffold_435-1510915933:354550..356405 | Clytia hemisphaerica | exon |
| TCONS_00065266-exon-scaffold_435-1575043694:354550..356405 | TCONS_00065266-exon-scaffold_435-1575043694:354550..356405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:349954..356405 + |
Blast
BLAST of TCONS_00065266 vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 7.758e-34 Identity = 56/79 (70.89%), Postives = 73/79 (92.41%), Query Frame = 2
Query: 611 NHIKRPMNSFMVWSRMERKRISEENPKLHNSEISKRLGASWKMLSEEERKPFAEEAKRLRQIHIQEHPEYKYRPRRKPK 847
+HIKRPMN+FMVWSR +R+++++ENPK+HNSEISKRLGA WK+LSE E++P+ +EAKRLR H++EHP+YKYRPRRKPK
Sbjct: 6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPK 84
The following BLAST results are available for this feature:
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