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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065293 ID=TCONS_00065293|Name=TCONS_00065293|organism=Clytia hemisphaerica|type=transcript|length=1119bpRun BLAST on NCBI protein sequence of TCONS_00065293-protein >TCONS_00065293-protein ID=TCONS_00065293-protein|Name=TCONS_00065293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp MSGRNVINAGRKARSLSRSRLSSSKKLIHGQSSELKVQPIDKLLIANRGERun BLAST on NCBI transcript from alignment at scaffold_435:306971..326470- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065293 ID=TCONS_00065293|Name=TCONS_00065293|organism=Clytia hemisphaerica|type=transcript|length=19500bp|location=Sequence derived from alignment at scaffold_435:306971..326470- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_435:306971..326470- >TCONS_00065293 ID=TCONS_00065293|Name=TCONS_00065293|organism=Clytia hemisphaerica|type=CDS|length=10989bp|location=Sequence derived from alignment at scaffold_435:306971..326470- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065293 vs. Swiss-Prot (Human)
Match: MCCA (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3) HSP 1 Score: 459.529 bits (1181), Expect = 1.275e-155 Identity = 213/294 (72.45%), Postives = 252/294 (85.71%), Query Frame = 1
Query: 238 IDKLLIANRGEIACRIMQSAKRMGIQSVTCYSDADQKSLHANMADEAFHIGPSPAVDSYLRMEKIINVAKKSGAQAVHPGYGFLSEKPEFANLCEDEGIIFVGPPSSAIRDMGIKSTSKYIMESAGVPVIKGYHGEDQSIETLKSEAEKIGYPVMLKAVRGGGGKGMRIVTKPEDFEAQLESAKNESLKAFDDDKFLVEKFVERPRHVEVQVFADRYGNTVYLFERDCSVQRRHQKIIEEAPAPGLSDQVRKEIGEAAVRAAKAVNYVGAGTVEFIMDKEQNFFFMEMNTRLQV 1119
I K+LIANRGEIACR+M++AK++G+Q+V YS+AD+ S+H +MADEA+ IGP+P+ SYL MEKII VAK S AQA+HPG GFLSE EFA LC+ EGIIF+GPP SAIRDMGIKSTSK IM +AGVPV++GYHGEDQS + LK A +IGYPVM+KAVRGGGGKGMRIV ++F+ QLESA+ E+ K+F+DD L+EKFV+ PRHVEVQVF D +GN VYLFERDCSVQRRHQKIIEEAPAPG+ +VRK++GEAAVRAAKAVNYVGAGTVEFIMD + NF FMEMNTRLQV
Sbjct: 49 ITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHGEDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHNFCFMEMNTRLQV 342 The following BLAST results are available for this feature:
BLAST of TCONS_00065293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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