TCONS_00065300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065300
Unique NameTCONS_00065300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065300 ID=TCONS_00065300|Name=TCONS_00065300|organism=Clytia hemisphaerica|type=transcript|length=2001bp
CGAGAGAAGaaaaatttctggaaaggaaagaattttcataaattaaaaCA
ATATTGTGATGGTTGGGAGAAGTCGTGATGAGAAGAACCGCCATTCTTCC
TCCATCCCGCCCTCCCTTGTCCCTGCTTCCAAAAGAAGAGCGCCCAATGG
GACTGGTGAAAATAGCAACCGTCCCTCAATACAAATGAGACTAGTTGTAT
CACGTGATATGGTTCattattgttttgatattttgatcaGTCATTTAAGA
AGGACAGATCTCCCCAGATCTAAACATCCCAAATTCACAAATGATGCCTA
cCCCTTGTTTGTGACATGGAAGACTGGAAAAGAATATCGTTTACGTGGTT
GTATAGGAACCTTCAGTGCTTTGAGGTTGCACGATGGATTACGTGAATAT
TCTCTGTCAAGTGCGTTGAGGGACAGCCGTTTCAGACCTATCAGTTTGGA
CGAAGTCAATAATCTTCATTGCTCAGTCTCCCTCCTAACTAACTTCGAAt
ccgagaaaaattatttaGACTGGGAGGTGGGAGTTCACGGAATAAGAATC
GAATTTCACAATGAACGTGGTCATCGGAAGAGCGCCACTTATCTGCCAGA
AGTCGCATCAGAACAAGGGTGGACGCGCAATGAGGCAATCGACTCACTGG
TCAAGAAAGCAGGCTATTATAAAACTATAACAGAGGACTTCCGAAAGACA
ATAAAACTAACTCGCTATCGAAGTGAGAAAATTGTTCTTAGCTATGATGA
ATATTGCGCTGATAATGATGTCAGCTAACGAAAGTGGAATGGTAGAGATT
TTAAAGACTTCTTATTTGActtgttgattttcttctcgTGGAAAAAACGA
ATGGTTGGTGATGATTCGAACTTTTAGTTTTAGTGACGTGTATCAATATA
TCTTGATGAACGATTCAACTTTCTTTTAAAGGCTACACCCAACGCCTGAA
GAAGACCTATAGCTATAAAACaactttttaaacaattttgagTGATATTT
CCTAAACACTTCATTAAATTCGTTGTCTGCTGTGAAgttaaaattggctt
ttagaaatcgATTTTATAAATATAACAACTCATCATTTTTACATTAGCAT
CAGGAATCTTTCACTTTTTAGGGCTTTTCGCATATTATTTAGTCAGCCAC
ACAAAATCGAAGCAAAATTTAGCCATCGAAAATCAGACATAAGTAGATTC
CTTCTAAGTTTCCTTGGATAAATCTCGTAattaatttctaaatttgatgC
ATGTAAAAAAGCCCTTTAACAAGTGTCTTGTGGGGTGTTAAAGAATATAC
AATAGTAAAAGGTTTATATTGGAGACTTGTTTTTACTAAGGCGTTGGTTA
CAGTTAGCCGGgttgaaatggaaaaataattcaacTCGGGATGAAATTCA
CTCCGGCAGGCTAGACGGAAGCGAGGAGaattcagcctccccacttttga
gtaaatgagatttttttctcttattcatagcaaattttatctcattttga
gccttcagcctccccactttaacggctgttccgccgggcctgtccGGTCT
ATATAGAAAATACTGTTTAGGCGGGGTGAAATCGTTTTTAAGTGAGGCGG
GTTGATTCCTGATGAGGACCGAAGTGAAATTTCTTTGAGGAATTGTTTCG
CAAATTCTTGCAGATTTTTAATACATGTAAAGTATGTGTCCAGTTGAAAT
TTCACATATAGCTGGAGTGAAATTGTGCATACATAACACAACGTCTCCCC
GGCTACGTTTACCCAGCGCCTAAATTTCAAGAAGAGTGGCTCTTTGCTTG
GTTACGCCctgtttttatcttttgtttCTGTGCAGAaccttgattttgtt
ttttttcttacgTAAAATGTGATAATTTCAGGTTAGGGAGTGAGCGAGTC
TTCATATTTTTAGTATTTATAtatcattttgtatttttcgtCGACATTAT
TCACTCATTGTTTTATGGAGAAAaacaattaaatttttcattatcgAAAC
G
Run BLAST on NCBI

protein sequence of TCONS_00065300-protein

>TCONS_00065300-protein ID=TCONS_00065300-protein|Name=TCONS_00065300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MVGRSRDEKNRHSSSIPPSLVPASKRRAPNGTGENSNRPSIQMRLVVSRD
MVHYCFDILISHLRRTDLPRSKHPKFTNDAYPLFVTWKTGKEYRLRGCIG
TFSALRLHDGLREYSLSSALRDSRFRPISLDEVNNLHCSVSLLTNFESEK
NYLDWEVGVHGIRIEFHNERGHRKSATYLPEVASEQGWTRNEAIDSLVKK
AGYYKTITEDFRKTIKLTRYRSEKIVLSYDEYCADNDVS
Run BLAST on NCBI

transcript from alignment at scaffold_435:416744..424270-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065300 ID=TCONS_00065300|Name=TCONS_00065300|organism=Clytia hemisphaerica|type=transcript|length=7527bp|location=Sequence derived from alignment at scaffold_435:416744..424270- (Clytia hemisphaerica)
CGAGAGAAGAAAAATTTCTGGAAAGGTGAAATATTTTTTTTACATTTTCA
TCCTCTGACTATCTATTGTATCTTTAACTCCATCAGATCTGGACTTTCTC
ATGATCATCATTTATCTCAAAGGTAAATGGCTAATCCAGTTAGATTTAGA
GTTTTTGATCTCTAAGAAAGTATATATAATAGTCACCAAACCGGTTAAAC
TAACACGATGTCGATGATATACAAAATCACGACCCTGCCGATGCACCGGA
CAGTCCGGTGTATTGTCCGGTGCCACANCACGATGTCAATGATATATCAC
GACCCTGCCGATGCACCGGACAGTCCGGTGCCACACTGGAAACCTTTTGT
TCAGTGTTAGCCCAGGGTTAATTTTTCAAACTTGTGTTTCAAAAATAATA
CTCCGGCCGGAGAGGCACTGGCCGGAGTCAGCTCTGGTGTTGAGATTGTC
CGGTGTTAAAAGGTATTCCCATCCTACACCGGACTTTGAGTGTCCGGTGT
TTGTAAAGTCTGTTCCAGCCGAGGTAGGAAACCTATTTTACCGGTACGGG
CAAATTTCAGAAAAATACTTTGAAAACAGTTAAAACACTTGAGAAAGTCT
CAAAAAATCAGGATAGAACGATAGGAAAGTAGAAATGAGGGGAAATTAGT
GACAATGCATTCTGGAGTATGATATCGCGTTTGCCAATCATTTTATTTTC
CCCCATTTTACTACTTTCCTATCTTCGATAGACCGATTCTGTGTGGTGTG
TGATGTCATTCCCACAATCAGCCATTTTTATCTAAGAAATAACAGAAAAA
ATATGTAAAGAATGGTTTAGTAACACCTTGCTTAGCTTAGCTCCAAAAGG
CTTGAAGTGTTCCATGCGCATAGTTTTCTCCAGACGGTGTCAATCGAACA
ACTTCGAACAAAAATCGCAATCGAACCAATCGAACGTAATCGAACGCGAT
CGAATAATTGCGATTCGATTGTCGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGAAT
ACAATCGAACGTAATCGAAGCAATCGAACAGCAAATCCTGGGTAATATTC
GATTGCGATTCGATTGCATTCGACAATCGAACTGCAATTATTCGATTGCG
TTCAATTGCGTTCGATTGATTCGGCGTTCGATTCGTTCGATTGACACCGT
CTGGTTTTCTGTTAGTTTTTTTATTTCGTGGGTGAAAATTAGTCAGTTAG
GAACAGGCAGCTTGCTTGAGATTTGGTTGAAGATAGTGCTTAACTGAATT
TTGCCAAATTAGTCTATTCTGATTTTTCTCAAGTATTTTTGAGTATTTTT
TTGAAACTGTCTGTACCTGTGAACCAGACCCGACCAGACCCGACCAGACC
CGACCAATCCAATCAAACTAATTGAACTCCATTGAACAATTAGAGTTTGA
GTAAAAAAATTAATCAAACTCTAAGATTTTTAATAAAATTGTGAGTGATT
CAATCAAGTTCAATCAATGGGTTTCGATTCTATCAGTTTGATATTAACCC
AATCAGGCTAGCTCTAAAGCTCTAAAACAACATCTAATAACATGAAAACC
AAAACATTTTATGATTCTTCAATGGGAAGCAATACTTACAAACATCAATT
TGTCAGATCTAACAAAATTAATAATGGTACTGTCATCATTGACAATAAAA
CAAAGGATTTTCTGTCAAGAGATTCCAACAACTTCCATCGAAATGATCTG
CCACAACTAAGTTCTGCCATTTTAGCACGGTCCAAGGATTGAGCCGAGAA
CACTTGCAGAACGCCTGCAAGCTCCTGCATGAGGAAAAACTTTAATCTAT
CAATCATTTTCTCAAGAGAAGAGTACGCGAAGCGATTCTAGCTTTACGAT
AGTGCCGCAGATCATCATCGGATTGTATTCAATTATATCATTATCCCTTT
ATTTTTATTTCTGGAACTTTTTCAAAAAAGGAAAAATAGAAAAGTTGTAT
TTTTTACTTCTCTTTTCACATACTGAATTTAAAAGATCTTCTATGTGGCG
TTTTTTTGCAAACTTGAAAAAACTGATTTTTGTCCCGCAAAAGTACAGAG
GCACAGACTGTACAGAATCAGTGTACTGACCCATAGCTGGTGGAGTGGTG
TATTTTTTAGGTTAAATTGAGTTAGTGCAGTTTACTAATCTAAACTATTT
TTGTGTTAGGAAATTTTAGTCTCAATCTTCTCGCAAATTTCATTTTTGAA
ATCTTTTTGCAAAATTTCTGAAAATATTTTTTCTTCTTTTTTATGTTGCT
TTTATTAGTGCTTTTATTTAAATTGTTATTATATAAATTTATTTTAGTTT
ATCCGGGAAAATGTACATATATGTACCCTTTGGATTAATTTATAGAAATA
GAAATAGAATACTAAAAAGGGTGGTGTTCTGAATTGATACACACTGAGAA
GTTTGTTTGTACATTGTACTAATTTCAGTGGTACAAACACAAGAACCCAG
CCAGACCCAGCTAATACCCATGTATATTTGCCCTTATTTGTCGAGAAAAG
TTAGTACAGTGTACTAAAAGGGTGGTGTCAAAGCCCTGGTCATGGAAGAA
GAAAGAAAAATGTGTTATGTCAATGTACATTGACTGTTACAGATTTTGAT
TTTAAAGCTGGATATATTTATTGTTTTCGTTTTGGTTTATTAAGGATGTT
GTACCTACTTTTATCATGTTTCATTCCTTGAAACTTGTAAAACATTTAAT
TTCCTAAACACGAGAATTCTTTGTTAAAATACTTATTACCTTTTTAGTTC
ATAGCATATTTTGTCAATAAATGTAGGATCAAAATCTGTAAGTAACTTGA
AAAGNTGTAGCATATTTTGTCAATATCTGTAAGTAACTTGAAAAGGACAC
GTAAGAGGTCGAAATATCTTTTTATGTTTCACTTGAATATTATTAAGTTA
TTCATTTAAGCATTTTATAGCGTAAATTAAAAAATATGGCTAAGTATAAA
AAAATTTGCTTTTAAATGTTTTTATACGTAGCAAGAATGGGTAATATACT
TTGCTGTATGATTAATTACTGAATAGATAGAAGTGAATAGTACTCTATAA
TTGGGATAACAATTTAGGCTGGAATGTTTGTTTGCCATCACCCGACTGAC
CCCACCTTGAAATCTGCTGACCCAAAAAAACTGTGTTTCCATTTTAAAGA
AGATTATTTTTTCTTCAAATCGAAACCTCTATCGTGTCTGTATATCGTTC
TATCTAAGAAGCTTAAAGAATCATTATTTTCTTTTTGCTCAACCGTTTTC
ATTTCAAAATTGCACAAATGTAAACAGAAACGCAACTCTAAAATTTAGGG
TCGAGTGACGGCAAACCAACTAAGTCCAGCCTGTCTTGTTAACTCCCCTG
CTTGACAGTTGATATTCAGCTTTCTGATTAAAAATATTTTTGAAATATTT
TAGGAAAGAATTTTCATAAATTAAAACAATATTGTGATGGTTGGGAGAAG
TCGTGATGAGAAGAACCGCCATTCTTCCTCCATCCCGCCCTCCCTTGTCC
CTGCTTCCAAAAGAAGAGCGCCCAATGGGACTGGTGAAAATAGCAACCGT
CCCTCAATACAAATGAGACTAGTTGTATCACGTGATATGGTTCATTATTG
TTTTGATATTTTGATCAGTCATTTAAGAAGGACAGATCTCCCCAGATCTA
AACATCCCAAATTCACAAATGATGCCTAGTAAGTGGTCTTTTTATTTATC
TCTCAACTGAGGTGATTCATGATCTTGAAATTATTTAGAATTATTTAAAA
GTAGCAGTAGCATTTTGTTTATGCCCTGCAAATGAAAGACAGATTTATGC
CAAAAAAATTTCCCTCTCTAGGCTACAAGAACTTTACAGGTCTACTAAGA
CTACAGCAATATATATTTTTGTTGAATTTTTTCTTTTCATAACATTTGAG
CAATATTCAATATTCAAACAATTTAATTATTATTCCATTGGGCTGTTCTA
TAAAATTTACATACAGTGGGGTGGACGAACCTTCTCAAGTGAAAACAAAT
TTCTTGGAAAAGTGTAGATACCCCCTGGAAAATGGCAAAATTTGCAAAAG
AACCCTTGGAAAAAATTCTTTTCATGTCTTAAAGTGAGGGTGGATGAACT
AAAATCAGTCGTTCACCCCCGGAAATTCAAGAATAACTTTTTACCCCCTG
GAAAAATGTAAAAAACACTTCTTTAGTCCCCCTGGAAATTCTTCTTGGAT
TATCCCCTGGAAATGTTCGTCCACCCCCTTGTATGGTCATAAAACCCTAA
ATAATAATCATGATTTTCATACTAAAGTAACCCTGATCTGACATTTTGTC
CGATCCACTTGAAATCGTTATTTCAAGCCTTGACACCTCATTCATGTTTA
TATTATTTTCAGCCCCTTGTTTGTGACATGGAAGACTGGAAAAGAATATC
GTTTACGTGGTTGTATAGGAACCTTCAGTGCTTTGAGGTTGCACGATGGA
TTACGTGAATATTCTCTGTCAAGGTGATATACTCTCGTGGCATAATTATT
GGCGTCTTAAAAGACTGGATTACGTCACAACTATAAATTCTTTGAGCTTC
TTTCCAAACTTTCATTAGCCTGTCTCCGTCTTAAAAGTTTCGTTTTGAAT
TTCAACGAACGTTCTTTTTTGAAAGACAAAATGGTCATTCCTCGTATCCC
TTTTTGATAAATTCCATTGACTAACTTCAGATTGATTTAAAAGGTGGATG
GTTGCAGGTATTGAAACCACATAAGTGCTAAAATTTTTATTTTTCATTGT
TCGTCTTTAGTGCGTTGAGGGACAGCCGTTTCAGACCTATCAGTTTGGAC
GAAGTCAATAATCTTCATTGCTCAGTCTCCCTCCTAACTAACTTCGAATC
CGAGAAAAATTATTTAGACTGGGAGGTAAGATTTTAAAAGACGTTTTACG
ATTTATAGCCAAAATCTCTCACTGTAGAAAGTAAGGCTGGAACGATTCGT
TTCCAAATGATCTCCGTATTGTATCGATTCCTGGCCTAGTTTTTAGTGTT
GTTGAAAGTCCAACACATACCTTTATTGGAACTAATTTTCGCTGGAACTA
ATATTCGCGGTCAAAGTAAAATCGGTAAAATTGCATTTCGTGGGTTTTAA
TTTCCGTGGTTTTGCCCTTTTTTGGACAAATTTCTTTCATTTTCCTAGGG
ATTTTTTTCAAATTTTTCGATATAATTGGAAACGATTGTATTTCGCGGAT
TCAAATTTTCGCAGTTTTGCCAAAAAACCACGAAAATTAGTTCCAATAAG
GCGAAAGTGAAATCAGATCAAGATGAAATCAGAACTGTAACCTGTTTAAC
ATTTAATTGTCGCTAGATGCATGATATGGAACATTGCTCATTCTTTTAGG
TGGGAGTTCACGGAATAAGAATCGAATTTCACAATGAACGTGGTCATCGG
AAGAGCGCCACTTATCTGCCAGAAGTCGCATCAGAACAAGGTATAATGGA
CTCTCTAACTCTTTTGTCAACAATGTTTCAATCATATCATCTTTGACTCG
ACTTATCTAATTATAAATCTAGTAGAAGTATGCATATAACATAGGTTGGT
GTGCAGAGTTTTGTAAAATCTTTTCAAATAGCGCCATATCAAAAAGCAGC
TTAAATTCCATGCGCCTTTTTATGTCTCTTAGCTCAATCACTGAGTGTTT
GGCCCTCGAGCGCACATTTCTTGATATGAGTGTTTCGTTGAACCCGTTGC
TTACAGTGTTACAGTAACAAGCTAATCTCGAAAACGTCACGAGTTTCCCT
CTCTTCTCAACACTTAACTAACAATTTTTTTCGTTTATTTTAGGGTGGAC
GCGCAATGAGGCAATCGACTCACTGGTCAAGAAAGCAGGCTATTATAAAA
CTATAACAGAGGACTTCCGAAAGACAATAAAACTAACTCGCTATCGAAGT
GAGAAAATTGTTCTTAGCTATGATGAATATTGCGCTGATAATGATGTCAG
CTAACGAAAGTGGAATGGTAGAGATTTTAAAGACTTCTTATTTGACTTGT
TGATTTTCTTCTCGTGGAAAAAACGAATGGTTGGTGATGATTCGAACTTT
TAGTTTTAGTGACGTGTATCAATATATCTTGATGAACGATTCAACTTTCT
TTTAAAGGCTACACCCAACGCCTGAAGAAGACCTATAGCTATAAAACAAC
TTTTTAAACAATTTTGAGTGATATTTCCTAAACACTTCATTAAATTCGTT
GTCTGCTGTGAAGTTAAAATTGGCTTTTAGAAATCGATTTTATAAATATA
ACAACTCATCATTTTTACATTAGCATCAGGAATCTTTCACTTTTTAGGGC
TTTTCGCATATTATTTAGTCAGCCACACAAAATCGAAGCAAAATTTAGCC
ATCGAAAATCAGACATAAGTAGATTCCTTCTAAGTTTCCTTGGATAAATC
TCGTAATTAATTTCTAAATTTGATGCATGTAAAAAAGCCCTTTAACAAGT
GTCTTGTGGGGTGTTAAAGAATATACAATAGTAAAAGGTTTATATTGGAG
ACTTGTTTTTACTAAGGCGTTGGTTACAGTTAGCCGGGTTGAAATGGAAA
AATAATTCAACTCGGGATGAAATTCACTCCGGCAGGCTAGACGGAAGCGA
GGAGAATTCAGCCTCCCCACTTTTGAGTAAATGAGATTTTTTTCTCTTAT
TCATAGCAAATTTTATCTCATTTTGAGCCTTCAGCCTCCCCACTTTAACG
GCTGTTCCGCCGGGCCTGTCCGGTCTATATAGAAAATACTGTTTAGGCGG
GGTGAAATCGTTTTTAAGTGAGGCGGGTTGATTCCTGATGAGGACCGAAG
TGAAATTTCTTTGAGGAATTGTTTCGCAAATTCTTGCAGATTTTTAATAC
ATGTAAAGTATGTGTCCAGTTGAAATTTCACATATAGCTGGAGTGAAATT
GTGCATACATAACACAACGTCTCCCCGGCTACGTTTACCCAGCGCCTAAA
TTTCAAGAAGAGTGGCTCTTTGCTTGGTTACGCCCTGTTTTTATCTTTTG
TTTCTGTGCAGAACCTTGATTTTGTTTTTTTTCTTACGTAAAATGTGATA
ATTTCAGGTTAGGGAGTGAGCGAGTCTTCATATTTTTAGTATTTATATAT
CATTTTGTATTTTTCGTCGACATTATTCACTCATTGTTTTATGGAGAAAA
ACAATTAAATTTTTCATTATCGAAACG

Coding sequence (CDS) from alignment at scaffold_435:416744..424270-

>TCONS_00065300 ID=TCONS_00065300|Name=TCONS_00065300|organism=Clytia hemisphaerica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_435:416744..424270- (Clytia hemisphaerica)
GGTGGACGCGCAATGAGGCAATCGACTCACTGGTCAAGAAAGCAGGCTAT
TATAAAACTATAACAGAGGACTTCCGAAAGACAATAAAACTAACTCGCTA
TCGAAGTGAGAAAATTGTTCTTAGCTATGATGAATATTGCGCTGATAATG
ATGTCAGCTAAGTGGGAGTTCACGGAATAAGAATCGAATTTCACAATGAA
CGTGGTCATCGGAAGAGCGCCACTTATCTGCCAGAAGTCGCATCAGAACA
AGTGCGTTGAGGGACAGCCGTTTCAGACCTATCAGTTTGGACGAAGTCAA
TAATCTTCATTGCTCAGTCTCCCTCCTAACTAACTTCGAATCCGAGAAAA
ATTATTTAGACTGGGAGCCCCTTGTTTGTGACATGGAAGACTGGAAAAGA
ATATCGTTTACGTGGTTGTATAGGAACCTTCAGTGCTTTGAGGTTGCACG
ATGGATTACGTGAATATTCTCTGTCAAGATGGTTGGGAGAAGTCGTGATG
AGAAGAACCGCCATTCTTCCTCCATCCCGCCCTCCCTTGTCCCTGCTTCC
AAAAGAAGAGCGCCCAATGGGACTGGTGAAAATAGCAACCGTCCCTCAAT
ACAAATGAGACTAGTTGTATCACGTGATATGGTTCATTATTGTTTTGATA
TTTTGATCAGTCATTTAAGAAGGACAGATCTCCCCAGATCTAAACATCCC
AAATTCACAAATGATGCCTAGGTGGACGCGCAATGAGGCAATCGACTCAC
TGGTCAAGAAAGCAGGCTATTATAAAACTATAACAGAGGACTTCCGAAAG
ACAATAAAACTAACTCGCTATCGAAGTGAGAAAATTGTTCTTAGCTATGA
TGAATATTGCGCTGATAATGATGTCAGCTAAGTGGGAGTTCACGGAATAA
GAATCGAATTTCACAATGAACGTGGTCATCGGAAGAGCGCCACTTATCTG
CCAGAAGTCGCATCAGAACAAGTGCGTTGAGGGACAGCCGTTTCAGACCT
ATCAGTTTGGACGAAGTCAATAATCTTCATTGCTCAGTCTCCCTCCTAAC
TAACTTCGAATCCGAGAAAAATTATTTAGACTGGGAGCCCCTTGTTTGTG
ACATGGAAGACTGGAAAAGAATATCGTTTACGTGGTTGTATAGGAACCTT
CAGTGCTTTGAGGTTGCACGATGGATTACGTGAATATTCTCTGTCAAGAT
GGTTGGGAGAAGTCGTGATGAGAAGAACCGCCATTCTTCCTCCATCCCGC
CCTCCCTTGTCCCTGCTTCCAAAAGAAGAGCGCCCAATGGGACTGGTGAA
AATAGCAACCGTCCCTCAATACAAATGAGACTAGTTGTATCACGTGATAT
GGTTCATTATTGTTTTGATATTTTGATCAGTCATTTAAGAAGGACAGATC
TCCCCAGATCTAAACATCCCAAATTCACAAATGATGCCTAGGTGGACGCG
CAATGAGGCAATCGACTCACTGGTCAAGAAAGCAGGCTATTATAAAACTA
TAACAGAGGACTTCCGAAAGACAATAAAACTAACTCGCTATCGAAGTGAG
AAAATTGTTCTTAGCTATGATGAATATTGCGCTGATAATGATGTCAGCTA
AGTGGGAGTTCACGGAATAAGAATCGAATTTCACAATGAACGTGGTCATC
GGAAGAGCGCCACTTATCTGCCAGAAGTCGCATCAGAACAAGTGCGTTGA
GGGACAGCCGTTTCAGACCTATCAGTTTGGACGAAGTCAATAATCTTCAT
TGCTCAGTCTCCCTCCTAACTAACTTCGAATCCGAGAAAAATTATTTAGA
CTGGGAGCCCCTTGTTTGTGACATGGAAGACTGGAAAAGAATATCGTTTA
CGTGGTTGTATAGGAACCTTCAGTGCTTTGAGGTTGCACGATGGATTACG
TGAATATTCTCTGTCAAGATGGTTGGGAGAAGTCGTGATGAGAAGAACCG
CCATTCTTCCTCCATCCCGCCCTCCCTTGTCCCTGCTTCCAAAAGAAGAG
CGCCCAATGGGACTGGTGAAAATAGCAACCGTCCCTCAATACAAATGAGA
CTAGTTGTATCACGTGATATGGTTCATTATTGTTTTGATATTTTGATCAG
TCATTTAAGAAGGACAGATCTCCCCAGATCTAAACATCCCAAATTCACAA
ATGATGCCTAGGTGGACGCGCAATGAGGCAATCGACTCACTGGTCAAGAA
AGCAGGCTATTATAAAACTATAACAGAGGACTTCCGAAAGACAATAAAAC
TAACTCGCTATCGAAGTGAGAAAATTGTTCTTAGCTATGATGAATATTGC
GCTGATAATGATGTCAGCTAAGTGGGAGTTCACGGAATAAGAATCGAATT
TCACAATGAACGTGGTCATCGGAAGAGCGCCACTTATCTGCCAGAAGTCG
CATCAGAACAAGTGCGTTGAGGGACAGCCGTTTCAGACCTATCAGTTTGG
ACGAAGTCAATAATCTTCATTGCTCAGTCTCCCTCCTAACTAACTTCGAA
TCCGAGAAAAATTATTTAGACTGGGAGCCCCTTGTTTGTGACATGGAAGA
CTGGAAAAGAATATCGTTTACGTGGTTGTATAGGAACCTTCAGTGCTTTG
AGGTTGCACGATGGATTACGTGAATATTCTCTGTCAAGATGGTTGGGAGA
AGTCGTGATGAGAAGAACCGCCATTCTTCCTCCATCCCGCCCTCCCTTGT
CCCTGCTTCCAAAAGAAGAGCGCCCAATGGGACTGGTGAAAATAGCAACC
GTCCCTCAATACAAATGAGACTAGTTGTATCACGTGATATGGTTCATTAT
TGTTTTGATATTTTGATCAGTCATTTAAGAAGGACAGATCTCCCCAGATC
TAAACATCCCAAATTCACAAATGATGCCTAGGTGGACGCGCAATGAGGCA
ATCGACTCACTGGTCAAGAAAGCAGGCTATTATAAAACTATAACAGAGGA
CTTCCGAAAGACAATAAAACTAACTCGCTATCGAAGTGAGAAAATTGTTC
TTAGCTATGATGAATATTGCGCTGATAATGATGTCAGCTAAGTGGGAGTT
CACGGAATAAGAATCGAATTTCACAATGAACGTGGTCATCGGAAGAGCGC
CACTTATCTGCCAGAAGTCGCATCAGAACAAGTGCGTTGAGGGACAGCCG
TTTCAGACCTATCAGTTTGGACGAAGTCAATAATCTTCATTGCTCAGTCT
CCCTCCTAACTAACTTCGAATCCGAGAAAAATTATTTAGACTGGGAGCCC
CTTGTTTGTGACATGGAAGACTGGAAAAGAATATCGTTTACGTGGTTGTA
TAGGAACCTTCAGTGCTTTGAGGTTGCACGATGGATTACGTGAATATTCT
CTGTCAAGATGGTTGGGAGAAGTCGTGATGAGAAGAACCGCCATTCTTCC
TCCATCCCGCCCTCCCTTGTCCCTGCTTCCAAAAGAAGAGCGCCCAATGG
GACTGGTGAAAATAGCAACCGTCCCTCAATACAAATGAGACTAGTTGTAT
CACGTGATATGGTTCATTATTGTTTTGATATTTTGATCAGTCATTTAAGA
AGGACAGATCTCCCCAGATCTAAACATCCCAAATTCACAAATGATGCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040937XLOC_040937Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065300-exon-scaffold_435-1575043694:424246..424270TCONS_00065300-exon-scaffold_435-1575043694:424246..424270Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1575043694:420243..420517TCONS_00065300-exon-scaffold_435-1575043694:420243..420517Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1575043694:419448..419558TCONS_00065300-exon-scaffold_435-1575043694:419448..419558Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1575043694:419046..419160TCONS_00065300-exon-scaffold_435-1575043694:419046..419160Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1575043694:418481..418571TCONS_00065300-exon-scaffold_435-1575043694:418481..418571Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1575043694:416744..418127TCONS_00065300-exon-scaffold_435-1575043694:416744..418127Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1510915933:424246..424270TCONS_00065300-exon-scaffold_435-1510915933:424246..424270Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1510915933:420243..420517TCONS_00065300-exon-scaffold_435-1510915933:420243..420517Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1510915933:419448..419558TCONS_00065300-exon-scaffold_435-1510915933:419448..419558Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1510915933:419046..419160TCONS_00065300-exon-scaffold_435-1510915933:419046..419160Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1510915933:418481..418571TCONS_00065300-exon-scaffold_435-1510915933:418481..418571Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1510915933:416744..418127TCONS_00065300-exon-scaffold_435-1510915933:416744..418127Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1491911889:424246..424270TCONS_00065300-exon-scaffold_435-1491911889:424246..424270Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1491911889:420243..420517TCONS_00065300-exon-scaffold_435-1491911889:420243..420517Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1491911889:419448..419558TCONS_00065300-exon-scaffold_435-1491911889:419448..419558Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1491911889:419046..419160TCONS_00065300-exon-scaffold_435-1491911889:419046..419160Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1491911889:418481..418571TCONS_00065300-exon-scaffold_435-1491911889:418481..418571Clytia hemisphaericaexon
TCONS_00065300-exon-scaffold_435-1491911889:416744..418127TCONS_00065300-exon-scaffold_435-1491911889:416744..418127Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065300-proteinTCONS_00065300-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:416744..424270 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.1755	17.7223	12.7614	12.1587	38.9264	32.0998	29.958	31.8543	17.8724	19.4363	13.7688	11.5891	9.31718	9.06749	7.46365	8.21242	17.0364	13.2585	5.4546	8.39342	10.6658	11.2987	15.0986	13.1258	10.8677	13.5815	28.9408	22.4126	20.4023	21.5209
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023473AMMECR1
IPR002733AMMECR1_domain
IPR027485AMMECR1_N
Blast
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BLAST of TCONS_00065300 vs. Swiss-Prot (Human)
Match: AMERL (AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 7.856e-82
Identity = 126/206 (61.17%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:  143 PNGTGENSNRPSIQMRLVVSRDMVHYCFDILISHLRRTDLPRSKHPKFTNDAYPLFVTWKTGKEYRLRGCIGTFSALRLHDGLREYSLSSALRDSRFRPISLDEVNNLHCSVSLLTNFESEKNYLDWEVGVHGIRIEFHNERGHRKSATYLPEVASEQGWTRNEAIDSLVKKAGYYKTITEDFRKTIKLTRYRSEKIVLSYDEYCA 760
            PNGT   +        LVV+ +M  YCFD+L  HL     P+ + P+FTND YPLFVTWKTG++ RLRGCIGTFSA+ LH GLREY+L+SAL+DSRF P++ +E+  L CSVSLLTNFE   +YLDWEVGVHGIRIEF NE+G +++ATYLPEVA EQ W + + IDSL++K G+   IT +FRKTIKLTRYRSEK+ +SY EY A
Sbjct:   92 PNGTANTTKN------LVVTAEMCCYCFDVLYCHLY--GFPQPRLPRFTNDPYPLFVTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFINEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEYIA 289
The following BLAST results are available for this feature:
BLAST of TCONS_00065300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AMERL7.856e-8261.17AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L P... [more]
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