TCONS_00065308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065308
Unique NameTCONS_00065308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065308 ID=TCONS_00065308|Name=TCONS_00065308|organism=Clytia hemisphaerica|type=transcript|length=230bp
TTTTTGacttagaaattgagttttggcTTTCGAAAGTAaccaaaattttt
tatgaaaccCCTCAAGGCCACTTATGAAGGGTTTATTTTCAAGGATTAAG
CATTGCATTTGCGAAAATAGAAAGAAATGTATTGAATTgaatttattttc
aatcatcaTAGAAAGAATACATTTTGATTTTGCTCACTATCTTCATCTTT
TTGACAGTTTTGTACACAAAATACAAATTC
Run BLAST on NCBI

transcript from alignment at scaffold_435:80465..80694

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065308 ID=TCONS_00065308|Name=TCONS_00065308|organism=Clytia hemisphaerica|type=transcript|length=230bp|location=Sequence derived from alignment at scaffold_435:80465..80694 (Clytia hemisphaerica)
GAATTTGTATTTTGTGTACAAAACTGTCAAAAAGATGAAGATAGTGAGCA
AAATCAAAATGTATTCTTTCTAtgatgattgaaaataaattcAATTCAAT
ACATTTCTTTCTATTTTCGCAAATGCAATGCTTAATCCTTGAAAATAAAC
CCTTCATAAGTGGCCTTGAGGggtttcataaaaaattttggtTACTTTCG
AAAgccaaaactcaatttctaagtCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040945XLOC_040945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065308-exon-scaffold_435-1491911889:80465..80694TCONS_00065308-exon-scaffold_435-1491911889:80465..80694Clytia hemisphaericaexon
TCONS_00065308-exon-scaffold_435-1510915933:80465..80694TCONS_00065308-exon-scaffold_435-1510915933:80465..80694Clytia hemisphaericaexon
TCONS_00065308-exon-scaffold_435-1575043694:80465..80694TCONS_00065308-exon-scaffold_435-1575043694:80465..80694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:80465..80694 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05626	0	0	0	8.54655	1.1256	4.07397	0	0	0	6.42079	1.40693	0	0	0.599779	2.57462	1.58586	1.62546	0	0	5.10626	1.49439	0	0	0	0	2.89668	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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