TCONS_00065316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065316
Unique NameTCONS_00065316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065316 ID=TCONS_00065316|Name=TCONS_00065316|organism=Clytia hemisphaerica|type=transcript|length=345bp
aatgagggTTATAAATCTTACGTCACCGAAGAATTAAAGAAAGTTGTTTA
CGGAACATCTCCTGAATGTAAAGGCTGGTATTACAACGAGAGTGGAACGA
ATTATACTTTATGGCCAGCTAGTTGTTTGCATTATTGGTGGAAAACCTCG
CAAGTGAATTTCGAAGATTTTAAGACCACCAAGACTTGTGACAAGGAGTG
AAATCTAATCCTAAGAAAACCTTAATAACTTGTTACTTTATTTGCCTTTT
TAAGCAGGACCTTATAagcgttgtttttttttgccttgaTGTGGATTATt
aggggaaatttgttcgttttgcCATTGAGGtaaggtacagaaatc
Run BLAST on NCBI

transcript from alignment at scaffold_435:250208..250552

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065316 ID=TCONS_00065316|Name=TCONS_00065316|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at scaffold_435:250208..250552 (Clytia hemisphaerica)
gatttctgtaccttaCCTCAATGgcaaaacgaacaaatttcccctaATAA
TCCACAtcaaggcaaaaaaaaacaacgctTATAAGGTCCTGCTTAAAAAG
GCAAATAAAGTAACAAGTTATTAAGGTTTTCTTAGGATTAGATTTCACTC
CTTGTCACAAGTCTTGGTGGTCTTAAAATCTTCGAAATTCACTTGCGAGG
TTTTCCACCAATAATGCAAACAACTAGCTGGCCATAAAGTATAATTCGTT
CCACTCTCGTTGTAATACCAGCCTTTACATTCAGGAGATGTTCCGTAAAC
AACTTTCTTTAATTCTTCGGTGACGTAAGATTTATAAccctcatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040953XLOC_040953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065316-exon-scaffold_435-1491911889:250208..250552TCONS_00065316-exon-scaffold_435-1491911889:250208..250552Clytia hemisphaericaexon
TCONS_00065316-exon-scaffold_435-1510915933:250208..250552TCONS_00065316-exon-scaffold_435-1510915933:250208..250552Clytia hemisphaericaexon
TCONS_00065316-exon-scaffold_435-1575043694:250208..250552TCONS_00065316-exon-scaffold_435-1575043694:250208..250552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:250208..250552 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.46063	2.11526	0	0.927042	1.4198	1.5341	0.844883	0.627963	0	0.153795	0.000588417	1.00387	5.2312	2.23724	3.34399	5.70904	2.05988	0.26739	5.78228	3.13763	0	0	1.06514	0	1.22251	1.59914	0	0	1.37195	0.387153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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