TCONS_00065321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065321
Unique NameTCONS_00065321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065321 ID=TCONS_00065321|Name=TCONS_00065321|organism=Clytia hemisphaerica|type=transcript|length=417bp
ATAAATCATATAATATCCGCAAACAAACTCTTGCTTCGTCTTTCCGATCG
ATTTTTGTAGTCTTTGTATAATGTCGATAAATTGCTAGATCAATAAGTCT
CTAATTAAGTCTATTTTTAagttaattctcaatatatctCAATTTCCTTC
ATTTGTTATTATCCGTTGTCTATGTGTCTTGTCCTTCTTTGTCTTTGTAT
AATTATAAATAAACCTAAGGAACTCCCTGGACTAATGAGTTCCTTCCCTT
GGACGAAAACCTGCCTCCCTCGAGCTATAGGGGTCAGCCTTTGTTCGCCA
ATCAGACCGATCTTTTGGCAGGACCAAAACCTTGGTTCGTTAATTAAATT
GAATAAATCTGCCGGTGAATCTTCTCCTCGTGCCTGTATCTCTCCTCTCG
ATTGTACTTTCTCGTCC
Run BLAST on NCBI

transcript from alignment at scaffold_436:1086..1502

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065321 ID=TCONS_00065321|Name=TCONS_00065321|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at scaffold_436:1086..1502 (Clytia hemisphaerica)
GGACGAGAAAGTACAATCGAGAGGAGAGATACAGGCACGAGGAGAAGATT
CACCGGCAGATTTATTCAATTTAATTAACGAACCAAGGTTTTGGTCCTGC
CAAAAGATCGGTCTGATTGGCGAACAAAGGCTGACCCCTATAGCTCGAGG
GAGGCAGGTTTTCGTCCAAGGGAAGGAACTCATTAGTCCAGGGAGTTCCT
TAGGTTTATTTATAATTATACAAAGACAAAGAAGGACAAGACACATAGAC
AACGGATAATAACAAATGAAGGAAATTGagatatattgagaattaactTA
AAAATAGACTTAATTAGAGACTTATTGATCTAGCAATTTATCGACATTAT
ACAAAGACTACAAAAATCGATCGGAAAGACGAAGCAAGAGTTTGTTTGCG
GATATTATATGATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040958XLOC_040958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065321-exon-scaffold_436-1491911889:1086..1502TCONS_00065321-exon-scaffold_436-1491911889:1086..1502Clytia hemisphaericaexon
TCONS_00065321-exon-scaffold_436-1510915933:1086..1502TCONS_00065321-exon-scaffold_436-1510915933:1086..1502Clytia hemisphaericaexon
TCONS_00065321-exon-scaffold_436-1575043694:1086..1502TCONS_00065321-exon-scaffold_436-1575043694:1086..1502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_436supercontigscaffold_436:1086..1502 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.73757	1.5369	0.769633	1.50252	2.508	1.60526	3.64262	3.13096	0.715452	3.49903	0.44139	0.505001	1.61827	1.90017	0	1.32751	0	1.04912	0.869381	0.269459	0	0.241316	0	0.655223	0.218045	0.471491	0.46776	0	0.122675	0.160662
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top