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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065367 ID=TCONS_00065367|Name=TCONS_00065367|organism=Clytia hemisphaerica|type=transcript|length=1109bp
TTTGTTTATGTCAAATACTACTTTTCAGGGGATGCCAACCGTTCCTTTAC
AACCAGCAAACAAGATGTCTTTGTGAATTACGTCGAGGCGTGCACGATAA
CTCTGTTCAACTTCACCAAATGGAAGACATCGTTATCAATCACTGGCATA
GAGGCTGCAAGTCAGCAAATAGACTGTGTCCGTCAAAATGTTGGAGGAAA
GGCTATAGAGTTTTACAAAACTATCATAAAATGAATTCCATGTGTAAACC
GTATGGAAATGTCACGTGGCCGGGTATGCCCGTTATTGGGCGTGTCCGAA
TACCGAGTTGTGGAATTCAACGGACTTTTGATTACGGAAGACGTTTATGT
TGTTGGAAAGGAGAGTATCCACTGCTTGGCAAAAAACGTACAATTCGAAT
ATATTTTGGTTATTACTGCTAGTAATTTCCTGATGAATAAACGGTTCCAC
CTTCACTGGAAGGAAAACGAGGGGTCTTTCAAACACTCTGATAAAAGAGA
GAGAATGGgaggtaaaaataaaaactctcTAAATTGAAGCTATACTGTTG
ATTACATTTCTTTCAGACAAGAAGATTTTTTCCTAGCCTTTTATTGAGTT
ATAAGTAGAAGAAGACAGTGAGTTTCCTAGAGCTGAAAAAGCTAGGGCTT
CTTTATTCTTAGAAAGTTTGATGAGTTGTTTGccattacacgctttttct
atttataagaatagtgtactttggctgagggtgagcattataatcatttt
tctattgttctaaacaatagacTTACTGTTATAACCTCGAAAtgtcaccc
tgatattcttatagaagttgttattataaaaaaagcgtgtatgagtATTT
GAAAAGTTGATTACAATTTTACctaaaaaacttaaattttatttttcata
taatttaaaaaagtaataaataaATTGTACAAAGTATTTGTGTGTAGAAA
AACAACTTtaggaaaatttaaaaccatacctttctttacaattttcaagc
TTGTGTGTATATTTGGATCTAATACGTCCAATGATAATGCCATAAAATCG
ACAGAAAATAGATAGAAATTCGACCCTGAAGAAAACCAATCGAGCACTTG
TTCACAACC Run BLAST on NCBI protein sequence of TCONS_00065367-protein >TCONS_00065367-protein ID=TCONS_00065367-protein|Name=TCONS_00065367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
CLCQILLFRGCQPFLYNQQTRCLCELRRGVHDNSVQLHQMEDIVINHWHR
GCKSANRLCPSKCWRKGYRVLQNYHKMNSMCKPYGNVTWPGMPVIGRVRI
PSCGIQRTFDYGRRLCCWKGEYPLLGKKRTIRIYFGYYC Run BLAST on NCBI transcript from alignment at scaffold_439:561496..562919+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065367 ID=TCONS_00065367|Name=TCONS_00065367|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at scaffold_439:561496..562919+ (Clytia hemisphaerica)
TTTGTTTATGTCAAATACTACTTTTCAGGTAAGATTCTCGTTACACGTTA
TATCATACTACCATGTATTTCCAGACCTCTATACTCCCTAAATGATATGT
CCAGTTCCTTGTTAGAGAACGAGTCTACATCCCTGTCTCGTGACAGGAAG
ACTTTTGGAAATTAATTCCAAATTTTTACAGGTAAAAACCTATCATCGGT
CAAACCATTTCTATGCAAGGTGGTTCCAGAAAATCTCTTTTTAAGTTTTG
TAATTATAGTATGTATAAGATCTAAAAAAAGATCCACCAGCCTTGTCGAA
TCAGAAGTATTGCTACTTagttaatatatatttttaatccCAGGGGATGC
CAACCGTTCCTTTACAACCAGCAAACAAGATGTCTTTGTGAATTACGTCG
AGGCGTGCACGATAACTCTGTTCAACTTCACCAAATGGAAGACATCGTTA
TCAATCACTGGCATAGAGGCTGCAAGTCAGCAAATAGACTGTGTCCGTCA
AAATGTTGGAGGAAAGGCTATAGAGTTTTACAAAACTATCATAAAATGAA
TTCCATGTGTAAACCGTATGGAAATGTCACGTGGCCGGGTATGCCCGTTA
TTGGGCGTGTCCGAATACCGAGTTGTGGAATTCAACGGACTTTTGATTAC
GGAAGACGTTTATGTTGTTGGAAAGGAGAGTATCCACTGCTTGGCAAAAA
ACGTACAATTCGAATATATTTTGGTTATTACTGCTAGTAATTTCCTGATG
AATAAACGGTTCCACCTTCACTGGAAGGAAAACGAGGGGTCTTTCAAACA
CTCTGATAAAAGAGAGAGAATGGgaggtaaaaataaaaactctcTAAATT
GAAGCTATACTGTTGATTACATTTCTTTCAGACAAGAAGATTTTTTCCTA
GCCTTTTATTGAGTTATAAGTAGAAGAAGACAGTGAGTTTCCTAGAGCTG
AAAAAGCTAGGGCTTCTTTATTCTTAGAAAGTTTGATGAGTTGTTTGcca
ttacacgctttttctatttataagaatagtgtactttggctgagggtgag
cattataatcatttttctattgttctaaacaatagacTTACTGTTATAAC
CTCGAAAtgtcaccctgatattcttatagaagttgttattataaaaaaag
cgtgtatgagtATTTGAAAAGTTGATTACAATTTTACctaaaaaacttaa
attttatttttcatataatttaaaaaagtaataaataaATTGTACAAAGT
ATTTGTGTGTAGAAAAACAACTTtaggaaaatttaaaaccatacctttct
ttacaattttcaagcTTGTGTGTATATTTGGATCTAATACGTCCAATGAT
AATGCCATAAAATCGACAGAAAATAGATAGAAATTCGACCCTGAAGAAAA
CCAATCGAGCACTTGTTCACAACC Coding sequence (CDS) from alignment at scaffold_439:561496..562919+ >TCONS_00065367 ID=TCONS_00065367|Name=TCONS_00065367|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_439:561496..562919+ (Clytia hemisphaerica)
TGTTTATGTCAAATACTACTTTTCAGGGGATGCCAACCGTTCCTTTACAA
CCAGCAAACAAGATGTCTTTGTGAATTACGTCGAGGCGTGCACGATAACT
CTGTTCAACTTCACCAAATGGAAGACATCGTTATCAATCACTGGCATAGA
GGCTGCAAGTCAGCAAATAGACTGTGTCCGTCAAAATGTTGGAGGAAAGG
CTATAGAGTTTTACAAAACTATCATAAAATGAATTCCATGTGTAAACCGT
ATGGAAATGTCACGTGGCCGGGTATGCCCGTTATTGGGCGTGTCCGAATA
CCGAGTTGTGGAATTCAACGGACTTTTGATTACGGAAGACGTTTATGTTG
TTGGAAAGGAGAGTATCCACTGCTTGGCAAAAAACGTACAATTCGAATAT
ATTTTGGTTATTACTGCTAGTGTTTATGTCAAATACTACTTTTCAGGGGA
TGCCAACCGTTCCTTTACAACCAGCAAACAAGATGTCTTTGTGAATTACG
TCGAGGCGTGCACGATAACTCTGTTCAACTTCACCAAATGGAAGACATCG
TTATCAATCACTGGCATAGAGGCTGCAAGTCAGCAAATAGACTGTGTCCG
TCAAAATGTTGGAGGAAAGGCTATAGAGTTTTACAAAACTATCATAAAAT
GAATTCCATGTGTAAACCGTATGGAAATGTCACGTGGCCGGGTATGCCCG
TTATTGGGCGTGTCCGAATACCGAGTTGTGGAATTCAACGGACTTTTGAT
TACGGAAGACGTTTATGTTGTTGGAAAGGAGAGTATCCACTGCTTGGCAA
AAAACGTACAATTCGAATATATTTTGGTTATTACTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065367-exon-scaffold_439-1491911889:561496..561523 | TCONS_00065367-exon-scaffold_439-1491911889:561496..561523 | Clytia hemisphaerica | exon |
| TCONS_00065367-exon-scaffold_439-1510915933:561496..561523 | TCONS_00065367-exon-scaffold_439-1510915933:561496..561523 | Clytia hemisphaerica | exon |
| TCONS_00065367-exon-scaffold_439-1575043694:561496..561523 | TCONS_00065367-exon-scaffold_439-1575043694:561496..561523 | Clytia hemisphaerica | exon |
| TCONS_00065367-exon-scaffold_439-1491911889:561839..562919 | TCONS_00065367-exon-scaffold_439-1491911889:561839..562919 | Clytia hemisphaerica | exon |
| TCONS_00065367-exon-scaffold_439-1510915933:561839..562919 | TCONS_00065367-exon-scaffold_439-1510915933:561839..562919 | Clytia hemisphaerica | exon |
| TCONS_00065367-exon-scaffold_439-1575043694:561839..562919 | TCONS_00065367-exon-scaffold_439-1575043694:561839..562919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:561496..562919 + |
Blast
The following BLAST results are available for this feature:
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