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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065374 ID=TCONS_00065374|Name=TCONS_00065374|organism=Clytia hemisphaerica|type=transcript|length=1691bp
GGGTCAAAGTTTCCGCGTTTACGAGTTTTCCGCTCGCTTTGAcctttctg
gaaaattttcctcGGAAACCCGTGGCTCGACACAAATTTGTTCCGCTTGg
aacaaaaacaaaggaaaccaAAATGGTAGCCTTTTGCAGCGGGATTTTTT
TTAACATGTGTGTTTTTAGAGATTTTGCTTGTCAAAACTGTCCTTCTCAC
AAATTATCCTGCCAACCTTTACAGTAAAGTAATAAAGTAAAGCACTTCAA
GAGGAAAGAATGGAGAACAGTTCTGATGTAGATTCAAATGATaatgaaac
tttcaaagaagaagaaggaaCAACAAACGAAAGTGAGCCAGATGAAGTTC
CATCACAAGCAATAAATCTGAACAATCCAAAGGCAATGAAGAAACTATTA
CAAATGTCTACTCCAAGCCCACAAGAGCTTGACCCAGATGAAGAATATTG
TTTTGAATCAAGTACACTTTATGAAGATAAAAATGCGTTCATTTCAAAGC
TTATTGAGAAGATCAAAGAAAACCCATGTTTGTACGACCATTCAACCTTT
GGGTGGCGCTaccctgaaaacaaaaaagaagtttgGGAGAGAATTGGGAA
AGAGCTTCAAGTTGAGCACAtaaccctagaaaaagaattcaagaaattga
aagatAATTACCGTAAATGCTTGAAACGTCGCTCAAAagctgaaaagtca
aaaaatcaaaacaaacagttGGCAACTTGTAATTTCTTTGAAGAACTATC
ATTTCTTAAAGGTCACTTTCCACCTGCAAGTGATTTAGAAGTTAGAACTG
AATCTATTCAAATACCCCAACCATCAGTAAGGCAAGCAAGAACTAAAACA
CATACAAAAAAGTCTTTAACTTCTTtatcaatgaaaaagttttcTATCCA
AGAGCTGAATCCAAATGATATATCACAAACAGATATTGCACTAATGTCTA
CAAATGCATCAGAAAACAATGTAACTGCAAACAATCCACAGTCACTTACT
CCTACCAAAATTGATCAAGTTGGAGTTGGAGAGCTGGAAACAACTAAAAT
GATAACTAGTGATAGTTCATTACACTCCACAAGTTCTTTTGATATTCAAT
CTGGACAGGCTGCAACCCAAAATGACAATACTCAGCTGTTGAATGTGAGG
TACTTTCCAAGTGGTAAATTACCTAATGGTATGAATTCTACACATGAACC
ACcggaaaagaaacataaactcCACAATGGTAATATGATTGAAGCAGACC
CAAATATAAAAGACACACACCaacttttttgtgaaagctTAGTTGAACCA
TTGCGTAGTCTTTCACCAAAGAAAAGTAAActtgcaaaaatgaaaattat
gcaAATATTATACGAGCTGGAAGAATAGCCTCGGATATGTTGAGTCTTAC
AGTGTTAtcataatgtttttgaattggATACGGAGAAACTCTTCCCAGTT
TATTTaggatttaattttttggacATCTAGATATTAGCAACCTTTCTAGT
TATATTACATAATTTGAACTNCTTAAAGGTCACTTTCCACCTGCAAGTGA
TTTAGAAGTTAGAACTGAATCTATTCAAATACCCCAACCATCACAAAGGC
AAGCAAGAACTAAGACACATACAAAAAAGTCTTTAACTTCTTtatcaatg
aaaaagttttcTATCCAAGAGCTGAATCCAAATGATATATC Run BLAST on NCBI protein sequence of TCONS_00065374-protein >TCONS_00065374-protein ID=TCONS_00065374-protein|Name=TCONS_00065374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MENSSDVDSNDNETFKEEEGTTNESEPDEVPSQAINLNNPKAMKKLLQMS
TPSPQELDPDEEYCFESSTLYEDKNAFISKLIEKIKENPCLYDHSTFGWR
YPENKKEVWERIGKELQVEHITLEKEFKKLKDNYRKCLKRRSKAEKSKNQ
NKQLATCNFFEELSFLKGHFPPASDLEVRTESIQIPQPSVRQARTKTHTK
KSLTSLSMKKFSIQELNPNDISQTDIALMSTNASENNVTANNPQSLTPTK
IDQVGVGELETTKMITSDSSLHSTSSFDIQSGQAATQNDNTQLLNVRYFP
SGKLPNGMNSTHEPPEKKHKLHNGNMIEADPNIKDTHQLFCESLVEPLRS
LSPKKSKLAKMKIMQILYELEE Run BLAST on NCBI transcript from alignment at scaffold_439:607787..611164+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065374 ID=TCONS_00065374|Name=TCONS_00065374|organism=Clytia hemisphaerica|type=transcript|length=3378bp|location=Sequence derived from alignment at scaffold_439:607787..611164+ (Clytia hemisphaerica)
GGGTCAAAGTTTCCGCGTTTACGAGTTTTCCGCTCGCTTTGAcctttctg
gaaaattttcctcGGAAACCCGTGGCTCGACACAAATTTGTTCCGCTTGg
aacaaaaacaaaggaaaccaAAATGGTAGCCTTTTGCAGCGGGATTTTTT
TTAACATGTGTGTTTTTAGAGATTTTGCTTGTCAAAACTGTCCTTCTCAC
AAATTATCCTGCCAACCTTTACAGTAAAGTAATAAAGTAAAGCACTTCAA
GAGGAAAGAATGGAGAACAGTTCTGATGTAGATTCAAATGATaatgaaac
tttcaaagaagaagaaggaaCAACAAACGAAAGTGAGCCAGATGAAGTTC
CATCACAAGCAATAAATCTGAACAATCCAAAGGCAATGAAGAAACTATTA
CAAATGTCTACTCCAAGCCCACAAGAGCTTGACCCAGATGAAGAATATTG
TTTTGAATCAAGTACACTTTATGAAGATAAAAATGCGTTCATTTCAAAGC
TTATTGAGAAGATCAAAGAAAACCCATGTTTGTACGACCATTCAACCTTT
GGGTGGCGCTaccctgaaaacaaaaaagaagtttgGGAGAGAATTGGGAA
AGAGCTTCAAGTTGAGCACAGTGAGTTTTAATGATGATATAATATAAAAT
TATCCTTGATTTTATTTACTGTATGACACTcaattacattttatttttac
aattttattttatttttaaggaaGTGTACAGtacggtgaaggcttcttcg
taaaagcgaaagacatgtatctatttttggatccggcatgcgggaatagt
gtcaggacctgcaggcgacctggtagggttgggtatgggtgtggtttggg
tgtggttacgtatcagattggctaagaatttggttattatcagttagggt
tagggttggagctcaaaacaagcactcttttgtgattttctctaaatata
gtctggtctgcagtttgtatatacaatataaatagccgtcagaaacacta
tctcggcatgaatccgtggcgcagtggataaggcattgggtttcaaatca
tcggaactttgcatttagtgggttcgaatcccaccggtggcgatctgtcg
gtaagtcattcagtaagttagaaaacatagaaaataactcacataaccag
aaagtcaggaaaactacgaacaagagactggaaagtacgaaataagtcca
gatctgtctttcgtctttacgaagaagccacgaccgtaCAGTACAGACTA
TGTGCAAACTTAAAAAGGTCATTTTGTTTTGCATGAGATTTccatttctg
cactaagattcctCTGCCACTTTTCTACCGAGAAAAGACCCATGGTGGCC
AGCAACCCTTGAGATCCTTAAAATCCTTGAAACGTCCTTGATTTTATTTC
TACCCttgaaaatttccttgaaaaccttgaaaatatgATGATTTTCAGTA
GACCCTTGAGCTACCATAAGTtagtctaatgttgacatccctcttctaat
tccgacacccttctttagagataggaataatagaaaggtcagaatcactg
atagaaaaaagatttatccctCTCTGATTGCTAAGCAAAAAAATTGGTTT
CAATCAGCGATTTCGACCTTCCTATTATCAATTTCTATGGGGGACCGTTT
CTATCTCCAAAGAaagtgtcgaaattagaagagggatgtcgacattagac
caacttacagtatgaAATTTAGagccttgaaacccttgaaattcAGAAAC
CTGGAAAAGATTTCAGTTCATTACTAAGAACCTTTCAAATGCAAAATTTT
CCCCACTTTGTGGGGATAAAAGTATATAAGCCTACAAGGAAATCAAGCTA
TAAAGAAAGCTAGAAAATAAACTAACGCTATTGTTTTGGACAGATGCACG
GTGACAGGAGGGGTCAGGGGTGCCAAGGCTTCCCAGCGGAGCTTTTTCGA
GGGggccaaattttaggaaaatccTAGCTTAGACAGCGCTTTGAAACGTG
AAAAGGCGCTCATTTATAAAGAAAATTGCAaactttattaaattattttt
agaaaaatgtgaCAAGTGCGGGATGGGAATCTAATGCAAAACGACGTTAG
Taaggatgtcatgttgaataattaaaaattccaacatcaaaacaatgata
ataAATAAGTGTACGCTGTAATAATCATACACTAATGTGTCATTGTTTCA
ATGCTGGACATCCTGACTAGCAAAATGTCTATGCTCACGATTTAgtccct
ttttttaatttttaactaaGATCtccaattttattttctcaatctctttt
attttagtaaccctagaaaaagaattcaagaaattgaaagatAATTACCG
TAAATGCTTGAAACGTCGCTCAAAagctgaaaagtcaaaaaatcaaaaca
aacagttGGCAACTTGTAATTTCTTTGAAGAACTATCATTTCTTAAAGGT
CACTTTCCACCTGCAAGTGATTTAGAAGTTAGAACTGAATCTATTCAAAT
ACCCCAACCATCAGTAAGGCAAGCAAGAACTAAAACACATACAAAAAAGT
CTTTAACTTCTTtatcaatgaaaaagttttcTATCCAAGAGCTGAATCCA
AATGATATATCACAAACAGATATTGCACTAATGTCTACAAATGCATCAGA
AAACAATGTAACTGCAAACAATCCACAGTCACTTACTCCTACCAAAATTG
ATCAAGTTGGAGTTGGAGAGCTGGAAACAACTAAAATGATAACTAGTGAT
AGTTCATTACACTCCACAAGTTCTTTTGATATTCAATCTGGACAGGCTGC
AACCCAAAATGACAATACTCAGCTGTTGAATGTGAGGTACTTTCCAAGTG
GTAAATTACCTAATGGTATGAATTCTACACATGAACCACcggaaaagaaa
cataaactcCACAATGGTAATATGATTGAAGCAGACCCAAATATAAAAGA
CACACACCaacttttttgtgaaagctTAGTTGAACCATTGCGTAGTCTTT
CACCAAAGAAAAGTAAActtgcaaaaatgaaaattatgcaAATATTATAC
GAGCTGGAAGAATAGCCTCGGATATGTTGAGTCTTACAGTGTTAtcataa
tgtttttgaattggATACGGAGAAACTCTTCCCAGTTTATTTaggattta
attttttggacATCTAGATATTAGCAACCTTTCTAGTTATATTACATAAT
TTGAACTNCTTAAAGGTCACTTTCCACCTGCAAGTGATTTAGAAGTTAGA
ACTGAATCTATTCAAATACCCCAACCATCACAAAGGCAAGCAAGAACTAA
GACACATACAAAAAAGTCTTTAACTTCTTtatcaatgaaaaagttttcTA
TCCAAGAGCTGAATCCAAATGATATATC Coding sequence (CDS) from alignment at scaffold_439:607787..611164+ >TCONS_00065374 ID=TCONS_00065374|Name=TCONS_00065374|organism=Clytia hemisphaerica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_439:607787..611164+ (Clytia hemisphaerica)
ATGGAGAACAGTTCTGATGTAGATTCAAATGATaatgaaactttcaaaga
agaagaaggaaCAACAAACGAAAGTGAGCCAGATGAAGTTCCATCACAAG
CAATAAATCTGAACAATCCAAAGGCAATGAAGAAACTATTACAAATGTCT
ACTCCAAGCCCACAAGAGCTTGACCCAGATGAAGAATATTGTTTTGAATC
AAGTACACTTTATGAAGATAAAAATGCGTTCATTTCAAAGCTTATTGAGA
AGATCAAAGAAAACCCATGTTTGTACGACCATTCAACCTTTGGGTGGCGC
TaccctgaaaacaaaaaagaagtttgGGAGAGAATTGGGAAAGAGCTTCA
AGTTGAGCACAtaaccctagaaaaagaattcaagaaattgaaagatAATT
ACCGTAAATGCTTGAAACGTCGCTCAAAagctgaaaagtcaaaaaatcaa
aacaaacagttGGCAACTTGTAATTTCTTTGAAGAACTATCATTTCTTAA
AGGTCACTTTCCACCTGCAAGTGATTTAGAAGTTAGAACTGAATCTATTC
AAATACCCCAACCATCAGTAAGGCAAGCAAGAACTAAAACACATACAAAA
AAGTCTTTAACTTCTTtatcaatgaaaaagttttcTATCCAAGAGCTGAA
TCCAAATGATATATCACAAACAGATATTGCACTAATGTCTACAAATGCAT
CAGAAAACAATGTAACTGCAAACAATCCACAGTCACTTACTCCTACCAAA
ATTGATCAAGTTGGAGTTGGAGAGCTGGAAACAACTAAAATGATAACTAG
TGATAGTTCATTACACTCCACAAGTTCTTTTGATATTCAATCTGGACAGG
CTGCAACCCAAAATGACAATACTCAGCTGTTGAATGTGAGGTACTTTCCA
AGTGGTAAATTACCTAATGGTATGAATTCTACACATGAACCACcggaaaa
gaaacataaactcCACAATGGTAATATGATTGAAGCAGACCCAAATATAA
AAGACACACACCaacttttttgtgaaagctTAGTTGAACCATTGCGTAGT
CTTTCACCAAAGAAAAGTAAActtgcaaaaatgaaaattatgcaAATATT
ATACGAGCTGGAAGAATAGATGGAGAACAGTTCTGATGTAGATTCAAATG
ATaatgaaactttcaaagaagaagaaggaaCAACAAACGAAAGTGAGCCA
GATGAAGTTCCATCACAAGCAATAAATCTGAACAATCCAAAGGCAATGAA
GAAACTATTACAAATGTCTACTCCAAGCCCACAAGAGCTTGACCCAGATG
AAGAATATTGTTTTGAATCAAGTACACTTTATGAAGATAAAAATGCGTTC
ATTTCAAAGCTTATTGAGAAGATCAAAGAAAACCCATGTTTGTACGACCA
TTCAACCTTTGGGTGGCGCTaccctgaaaacaaaaaagaagtttgGGAGA
GAATTGGGAAAGAGCTTCAAGTTGAGCACAtaaccctagaaaaagaattc
aagaaattgaaagatAATTACCGTAAATGCTTGAAACGTCGCTCAAAagc
tgaaaagtcaaaaaatcaaaacaaacagttGGCAACTTGTAATTTCTTTG
AAGAACTATCATTTCTTAAAGGTCACTTTCCACCTGCAAGTGATTTAGAA
GTTAGAACTGAATCTATTCAAATACCCCAACCATCAGTAAGGCAAGCAAG
AACTAAAACACATACAAAAAAGTCTTTAACTTCTTtatcaatgaaaaagt
tttcTATCCAAGAGCTGAATCCAAATGATATATCACAAACAGATATTGCA
CTAATGTCTACAAATGCATCAGAAAACAATGTAACTGCAAACAATCCACA
GTCACTTACTCCTACCAAAATTGATCAAGTTGGAGTTGGAGAGCTGGAAA
CAACTAAAATGATAACTAGTGATAGTTCATTACACTCCACAAGTTCTTTT
GATATTCAATCTGGACAGGCTGCAACCCAAAATGACAATACTCAGCTGTT
GAATGTGAGGTACTTTCCAAGTGGTAAATTACCTAATGGTATGAATTCTA
CACATGAACCACcggaaaagaaacataaactcCACAATGGTAATATGATT
GAAGCAGACCCAAATATAAAAGACACACACCaacttttttgtgaaagctT
AGTTGAACCATTGCGTAGTCTTTCACCAAAGAAAAGTAAActtgcaaaaa
tgaaaattatgcaAATATTATACGAGCTGGAAGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065374-exon-scaffold_439-1491911889:607787..608406 | TCONS_00065374-exon-scaffold_439-1491911889:607787..608406 | Clytia hemisphaerica | exon |
| TCONS_00065374-exon-scaffold_439-1510915933:607787..608406 | TCONS_00065374-exon-scaffold_439-1510915933:607787..608406 | Clytia hemisphaerica | exon |
| TCONS_00065374-exon-scaffold_439-1575043694:607787..608406 | TCONS_00065374-exon-scaffold_439-1575043694:607787..608406 | Clytia hemisphaerica | exon |
| TCONS_00065374-exon-scaffold_439-1491911889:610094..611164 | TCONS_00065374-exon-scaffold_439-1491911889:610094..611164 | Clytia hemisphaerica | exon |
| TCONS_00065374-exon-scaffold_439-1510915933:610094..611164 | TCONS_00065374-exon-scaffold_439-1510915933:610094..611164 | Clytia hemisphaerica | exon |
| TCONS_00065374-exon-scaffold_439-1575043694:610094..611164 | TCONS_00065374-exon-scaffold_439-1575043694:610094..611164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:607787..611164 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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