TCONS_00065387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065387
Unique NameTCONS_00065387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065387 ID=TCONS_00065387|Name=TCONS_00065387|organism=Clytia hemisphaerica|type=transcript|length=569bp
NtttttagtttaatatttacCTTCAAGTACCTTTCGAATTTCATTTCAga
tcttgactttttctttagAATGGTTTGAAATGGAAGCAGTTTTTGAACCC
GCCAAGGGGACCCCAGATGGGTCTAAATATGGTGTTGCGAACCAGGCGGT
ATTACCTAGCTAAACATGCAACATCTCTGGCGATAAAGATACGTGGAACA
GTAAAGAGATAtgtttcatttggaaatgattaTCGTTTGGTGTGAGGGCA
AATTGATTCTGTTTTCATCAATATCACCCAAATTCAACCAATACAATGCA
CCTACCTACTTTGTGTAATGGATGTTTTTGTATCGATACCGATCCAAGAC
TAGGTGAATCTTTAAGCAGAGAAGATCAAATATTGGTTGCTTCGATGTGT
TTAATTGGAGTGGCATTAGTTTCCAAGCTAAACATGCAACATATCTGGCG
ATAAAGATACGTGGAACAGTAAAGAGATAtgtttcatttggaaatgatta
TCGTTTGGTGTGAGGGCAAATTGATTCTGTTTTCATCAATATCACCCAAA
TTCAACCAATACAATGCAN
Run BLAST on NCBI

transcript from alignment at scaffold_439:9721..21073-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065387 ID=TCONS_00065387|Name=TCONS_00065387|organism=Clytia hemisphaerica|type=transcript|length=11353bp|location=Sequence derived from alignment at scaffold_439:9721..21073- (Clytia hemisphaerica)
NTTTTTAGTTTAATATTTACCTTCAAGTACCTTTCGAATTTCATTTCAGA
TCTTGACTTTTTCTTTAGAATGGTTTGAAATGGAAGCAGTTTTTGAACCC
GCCAAGGGGACCCCAGATGGGTCTAAATATGGTGTTGCGAACCAGGCGGT
ATTACCTAGCTAAACATGCAACATCTCTGGCCATAAAGATACGTAGAACA
GTAAAGAGATAATGTTTCATTTGGAAATGATGATCGTTTGGAGTGAGTGC
AAATTGATTCCGTTTTCATGAATATCTTCCAAATTCAACNTTGGAGTGAG
GGCAAATTGATTCTGTTTTCATGAATATCTTCCAAATTCAACAAATACAA
AGCACCTACTTTGTGTAATGGATGTTTTTGTATCGATACCGATCGAAGAC
AAGGTGAAACTTTAAGCAGAGAAGATCAAATATGGTATGCAAATATTGTT
GCTTGGATATGTTTAAATGGACTGGCATTAGTTTCCAAGGTAATACTTAA
GTTTTTTTATCGTCTTAGTTATCATCCACATTCCTTAATGTATTTGATAA
AGTTTACTTTTATTTCAAAAGGTAAATTTTGACTATTCAAGCAATTCAAA
AGACATGAACTTCTTGTCGGCAAGTAGCCTGCTTTGTTTTTTTCGGCAAA
TTTCCGGATGACATACGGGGATAAGTGCTGGCAAAAGATGTAATCAAATT
TTCTTTGTTGTCGGCAAAGTGCCAGTTATTTTACTTTCTTTTCGGCATAT
TACTGAATAGTTTTTTTATTGCCGGCAAACTGCCAGCTATTTTCCATAGT
TACCGGCAGATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNCAAAAGTATCCCTTTAAACCAAATCCTTTTCTAAAAATA
GGATTTAAACAAATGTTGCAAGCAAACTAACTGTCTAACAGCTTATTGCT
GGCTGTAATTAATGGATTACCGGACTCAAAAAGAGTGTCATCGGCAAGAT
AACTTTTTATTTTTAATGCCTTTTTCATCTACTTTTTAAATTGTTGGTAA
TTTTATTTTGGTTATTAGACATCATTCTATTTTACCAAATAAAATCAAAC
ANGGTTATTAGACATCATTCTATTTTACCAAATAAAATCAAACATGAGTT
TGGTAACAGTTTGGATTTATTTATTTAGATCCGTGTATTTTAAAGCCAAC
TTTACACAGGTATTTGTCTGTGTTTAGTGATCGTAGTTGTTCCCTTATCA
TCCTTTATTGAATTGTCTTTCCTTTCTTCAGATGCTGAAGGAAATTTTTT
TTATCTAGGCCCATAACTGTCTTTTTAGATGTTTTATTTAATGCAAATTT
ATTCGGCATTTTATATTATCCGTTGGATTGATTTTGTCAATCGGAAACTN
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NNNNGATGCTGAAGGAAATTTTTTTTATCTAAGCCCATAACTTTTTTTTT
AGATGTTTTATTTAATGCAAATTTATTCGGCATTTTATATTATCCATTGG
ATTGATTTTGTCAATCNTTTTTAGATGTTTTATTTAATGCAAATTTATTC
GGCATTTTATATTATCCATTGGATTGATTTTGTCAATCGGAAACTTCTTG
CCGGCAACTAGCCGGCTTTCTTTTTGTCGGCAAATTGTAGGATGACATAC
GGGGATAGGTGCCGGCAAAAAATTCAAACGAATTTTCTTGATTGTCGGTA
AAGTGCTGGTTATTTTACTTTCTTTTCGGCATATTACTGAATAGTTTTCT
TCATTGCTGGAAAATTGCCAGCTATTTTATATAGTTACCGGCAGATTGCT
CGCAAAAGTCTCCCTTTAAACCAAATCCTTTTCTAAAAATAGGATTTACA
CAAATGTTGCCAGCAGACTGTCTAACAGCTTATTGCTGGCTGTAATTAAT
AGATTGCGGGACTCAAAAAGAGTGTCACCGGCAAGATGCCTTTTAATGCC
TTTTTCANAAGAGTGTCACCGGCAAGATAACTTTTTATTTTTAATGCCTT
TTTCATCTACTTTTTAAATTGTTGCTAATTTTATTTTGGTTATTAGACAC
ATTCTATTTTACCAAATAAAATCAAACATGAGTTTGGTAACAGTTTGGAT
TTATTTATTTAGATCCGTGTATTATAAAGCCAACTTTACACAGATATTTG
TATGTGTTTAGTGATCGTAGTTGTTCACTTATCATCCTTTATTGAATTTT
CTTTCCTTTCTTCAGATGCTGAAGGAAATTTTTTTTATCTAAGCCCATAA
CTTTCTTTTCAGATGTTTTATTTAATGCAAATTTATTCGGCATTTTATAT
TATCTGTTGGATTGATTTTGTCAATCGGAAACTTCTTGTCGGCAAATTGT
TGGATGACATACGGGGATAAGTGCCGGCAAAAAATTCAAACAAATTTTCT
TGGTTGTCGGTAAAGTGCCGGCTATTTTACTTTTTTTTCGGCATATTACT
GAATAGTTTTCTTATTGCCGGAAAATTGCCAGCTATTTTATATAGTTACC
GGCAGATTCCAGCAAAAGTCTCCCTTTAAACCAAATCCTTTTCTAAAAAT
AGGATTTACACAAATGTTGCCAGCAACTGTCTAACAGCTTATTGCAGGCT
GCAATTAATGGATTGCTGGACTCAAAAAGAGTGTCACCGGCAAGATGCCT
TTTAATGCCTTTTTCATCTACTTTTTAAATTGTTGCTGATTTTATTTTGG
TTATTAGACATCATTCTATTTTACCAAGTAAAATCAAACATGAGTTTGGT
AACAGTTTTGATTTAATTATATAGATCCGTGTATTTTAAAGCCAACTTTA
CACAGATGTTTGTCTGTGTTCTGTGATCATAGTTGTTCACTTATCTTCCT
TTATTGAATTGTTTTTTCTTTGCTTCACAAAATAGTACTATTACACTTTT
TCTTCAGGGAGATTCGTGTTTCTCTCCGATGTTTTCGTGTTTCACAATGA
AAACATAAATTTTGTTTTTGTAGAGTTTCATATAGAAAACTACGAAAAAA
TTTTCTATAAGAAGTTTGTGCTTTTTGCTTTGTAATTTAAGCACAATTTA
TCAGGCAGTTTGAATTGTTGAGAGATTTCCTCTTTGNNNNNNNNNNNNNN
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ACAGATATTTGTCTGTGTTTAGTGATCGTAGTTGTTCACTTATCATCCTT
TATTGAATTGTCTTTCCTTTCTTCAGATGCTGAAGGAAATTTTTTTTATT
TAAGCCCATAACTTTCTTTTCAGATGTTTTATTTAATGCAAATTTATTCG
GCATTTTATATTATCCGTTGGATTGATTTTATCAATCGGAAACTTCTTGC
CGGCAACTAACCAGCTTTCTTTTTGTCGGCAAATTGTAGAATGACATACA
GGGATAAATGCCGGCAAAAGATGGAAACAATTTTCTTTGTTGTTAGCAAA
GTGCAGGCGATTTTTTTTTTGTCGGCATATTACTGAATAGTTTTCTTCAT
TGCCTGAAAATTGCCAGTTTTTTTCTATAGTTACCGGCAAATTCCAGCAA
AAGTCTCCCTTTAAACGTAATCCTTTTCAAAAATAGGATTTACACAAATG
TTGCCAGCAAACTGTCTAACAGCTTATTGCAGGCTGTAATTAATGGATTG
CGGGACTCAAAAAGAGTGTCACCGGCAAGATGCCTTTTAATGCCTTTTTC
ATCTACTTTTTAAATTGTTGCTGATTTTATTTTGGTTATTAGACATCCTT
CTATTTTACCAAATAAAATCAAACATGAATATGGTAACAGTTTGGGTTTA
TTCATTTAAATTCGTGTATTTTAAAGCCAACTTTACACAGAAAGTTGTCT
GTGTTCTGTGATCATAGTTGTTCACTTATCTTCCTTTATTGAATTGTTTT
TTCTTTGCTTCACAAAATAGTACTATTCCACTTTTTCTTCAGGGAGATTC
GTGTTTCTCTCCGATGTTTTCGTGTTTCACAATGAAAACATAAATTTTGT
TTTTGTAGAGTTCTTCAGATGCTGAAGGAAATTTTTTTTATCTAAGCCCA
TAACTTTCTTTTTAGATGTTTCATTTAATTCAGATTTATGCAGCCTATTA
TATTATCCGTTGGATTGATTTTGTCAATCCAAAACTTCTGGCCGGCAACT
AGCCAGCTTTGTTTTTGTTGGCAAATTGTAGGATGACATTAGTAGATAAG
TGCCGGCAAAAGGTTCAATCAAATTTTCTTGGTTGACGGTAAAGTGCCGG
CTATTTTACTTTGTTGTCGGCTATATTACTGAATAGTTTTCTTCATTGCC
GGCAAATTGCCAGCTATTTTATATAGTTACCGGCAGATTCGAGCAAAAGT
CTCCCTTTAAACCTAATGCTTTTCTAAAAATAGGATTTCCACAAATGTTG
CCAGCAAACTGTCTAACAGCTAAGCTGGCTGTAATTATTGCATTTCCGGA
CTCAAAAAGAGTGTCACCGGCAAGATGCCTTTTAATGCCTTTTTCATCTA
CTTTTTAAATTGTTGCTGATTTTATTTTGGTTATTAGACATCATTCTATT
TTACCAAATAAAATCAAACATGAATTTGGTAACAGTTTGGGTTTATTTAT
TTAAATTCGTGTATTTTAAAGCGAACTTTACACAGAAAGTTGTCTGTGTT
CTGTAGTTGTTAACTTATCATCCTTTATTGAATTGTCTTTTCTTTGCTTC
ACAAGATAGTACTCTCTCGCCTTTCTTCAGATGCTGAAGGAAATTTTTTT
TATTTAAGCCCATAACTTTCTTTTTAGATATTTCATTTAATGCAGATTTT
ACCACCATTTTAAAATACCCGTTGAATTGATTTTGTCTATCGTTACCTAG
CTAAACATGCGACATCTCTGGCGATAAAGATACGTGGAACAGTAAAGAGA
TATGTTTCATTTGGAAATGATTATCGTTTGGTGTGAGGGCAAATTGATTC
TGTTTTCATCAATATCACCCAAATTCAACCAATACAATGCACCTACCTAC
TTTGTGTAATGGATGTTTTTGTATCGATACCGATCCAAGACTAGGTGAAT
CTTTAAGCAGAGAAGATCAAATATTGGTTGCTTCGATGTGTTTAATTGGA
GTGGCATTAGTTTCCAAGGTAATGCTTAAGTTTGTTTATCATCTTAGTTA
TCATCCACATTCCTTAATGTATTTGATAAAGGTTACATTTATTTCAAAAG
GTAAATTTTGACCATTCAAGCGATTCTAAAGACATGAACTTCTTGTCGGC
AACTGGCCAGCTTTGTTTTTGTTGGCAAATTGCCGGATGACATACAGGGA
TAAATGCCGGCAAAAGATGTAATCAATTTTCTTTGCTGTTAGCAAAGTGC
CGGTGATTTTTCTTTTTGTCGGCATATTACTGAATAGTTTTCTTCATTGC
CTGAAAATTGCCAGTTTTTTTCTATAGTTACCGGCAGATTCCAGCAAAAG
TCTCCCTTTAAACCAAATCCTTTTCTAAAAATAGGATTTACACAAATGTT
GCCAGCAAACTGTCTAACAGCTTATTGCAGGCTGTAATTAATGGATTGCT
GGACTCAAAAAGAGTGTCACTGGGAAGATGCCTTTTAATGCCTTTTTCAT
CTACTTTTTAAATTGTCGCTGATTTTATTTTGGTTATTAGACATCCTTCT
ACTTTACCAAATAAAATCAAACATGAATATGGTAACAGCTTGGGTTTATT
CATTTAAATTCGTGTATTTTATAGCCAACTTTACACAGAAAGTTGTCTGT
GTTCTGTGATCGTAGTTGTTCACTTATCATCCTTTATTGAATTGTCTTTT
CTTTCTTCAGATGCTGAAGGAAATTTTTTTTATCTAAGCCCATAACTTTC
TTTTTAGATGTTTCATTTAATTCAGATTTATGCAGCCTATTATATTATCC
GTTGGATTGATTTTGTCAATCCGAAACTTCTGGCCGGCAACTAGCCAGCT
TTGTTTTTGTTGGCAAATTGTAGGATGACATACGGGGATAAGTGCCGGCA
AAGTTTCAATCAAATTTTCTTCGTTGTCGGCAAAGTGCCGGCTATTTTTC
TTTGTTGTCGACTATATTACTGAATAGTTTTCTTCATTGCCTGCAAATTG
CCAGCTATTTTATATAGTTGCCTGCAGATTCCAGCAAAAGTCTCCCTTTA
AACCAAATGCTTTTTTAAAAATAGGATTTCCACAAATGTTGCCAGCAAAC
TGTCTAACAGCTTATTGCTGGCTGTAATTAATGCATTGCCGGACTCTAAA
AGAGTGTCACCGGCAAGATGCCTTTTAATGCCTTTTTCATCTACTTTTTA
AATTGTTGCTGATTTTATTTTGGTTATTAGACATCATTCTATTTTACCAA
ATAAAATGAAACATGAATTTGGTAACAGTTTGGGTTTATTTATTTAAATT
CGTGTATTTTAAAGCGAACTTTACACAGAAAGTTGTCTGTGTTCTGTAGT
TGTTAACTTATCATCCTTTATTGAATTGTCTTTCCTTTCTTCAGATGCTG
AAGGAAATTTTTTTATTTAAGCCCATAACTTTCTTTTTAGATGTTTCATT
TAATGCAGACTTATGCAGCACATCATATTATCCGTTGGATTGATTTTGTC
AATCGAAAACTTCTTGCCGGCAACTAGCCAGCTTTGTTTTTGTCCGCAAA
TTGTAGGATGACATACGGGGATAAGTGCCGGCAAAAGATTCAATCAAATT
TTCTTGGTTGTCGGCAAAGTGCCGGCTATTTTACTTTGTTGTCGGCAATA
TTACCGAATAGTTTTTTTCATTGCCGGCAAATTGCCAACTATTTTATTTA
ATGCAAATTTTACCATCATTTTAAAATATCCGTTGAATTGATTTTGTCTA
TCGTTACCTAGCTAAACATGCAACATATCTGGCGATAAAGATACGTGGAA
CAGTAAAGAGATATGTTTCATTTGGAAATGATTATCGTTTGGTGTGAGGG
CAAATTGATTCTGTTTTCATCAATATCACCCAAATTCAACCAATACAATG
CAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040987XLOC_040987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065387-exon-scaffold_439-1575043694:20902..21073TCONS_00065387-exon-scaffold_439-1575043694:20902..21073Clytia hemisphaericaexon
TCONS_00065387-exon-scaffold_439-1575043694:11606..11860TCONS_00065387-exon-scaffold_439-1575043694:11606..11860Clytia hemisphaericaexon
TCONS_00065387-exon-scaffold_439-1575043694:9721..9862TCONS_00065387-exon-scaffold_439-1575043694:9721..9862Clytia hemisphaericaexon
TCONS_00065387-exon-scaffold_439-1510915933:20902..21073TCONS_00065387-exon-scaffold_439-1510915933:20902..21073Clytia hemisphaericaexon
TCONS_00065387-exon-scaffold_439-1510915933:11606..11860TCONS_00065387-exon-scaffold_439-1510915933:11606..11860Clytia hemisphaericaexon
TCONS_00065387-exon-scaffold_439-1510915933:9721..9862TCONS_00065387-exon-scaffold_439-1510915933:9721..9862Clytia hemisphaericaexon
TCONS_00065387-exon-scaffold_439-1491911889:20902..21073TCONS_00065387-exon-scaffold_439-1491911889:20902..21073Clytia hemisphaericaexon
TCONS_00065387-exon-scaffold_439-1491911889:11606..11860TCONS_00065387-exon-scaffold_439-1491911889:11606..11860Clytia hemisphaericaexon
TCONS_00065387-exon-scaffold_439-1491911889:9721..9862TCONS_00065387-exon-scaffold_439-1491911889:9721..9862Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:9721..21073 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
78.6517	75.366	42.6907	33.6189	10.3375	10.6174	20.9106	22.9583	119.29	100.488	145.813	192.512	82.7736	109.416	53.3512	64.4351	35.7739	33.2661	75.911	52.8572	54.0636	29.3942	51.3418	57.1782	0.341076	1.54468	52.9336	41.1085	40.9377	33.6081
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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