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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065484 ID=TCONS_00065484|Name=TCONS_00065484|organism=Clytia hemisphaerica|type=transcript|length=2177bp
AACTGGTGAAATACATAGCTGAGAGGGCTGTATTGTGCGCTATGATCATC
GGTGTTTGAGTAAGAAAGTAATAACAACTTACAAAGTCCGGAATGATGGT
GAAAATGATAAACGTGATTACTAACAAAAAGATGGCGAAAAATTGTTTGC
TATTCGTTAGCCTCCTCGGTGGTCTTTTCCGTATGCTTTGGGTTTTTCCG
GCGTTCGTTATATCCGGGTTCACGCagttcttttttctgttttgcttaat
tttgatgaaaatgtatAAATAGGCTGGGATAGCGACAAGGAGGAATATGA
TATCCAGAATCGGAAAGAAAATGGCGTcaatgatgaaaatttccacATCT
TGGAACCAGAAGATAAAGAAGAGTATCCAGTTGAAACACCACGCTAGTAT
GATGAGCTTAATGGTGCTTCTTGTGTTCCAATACAACGGAAACTTGATGC
TCAAATAGATTCGCATAAACCTATCTAATGACATGAAAATTAACGACTCG
TACATCATATAATAAAAACTGTATTGAATCAGTGACATCAAGCGAAAATG
TTGCGGTAAAGCTCGCCGAAAAATGCCAAAGACACATGTCTGTAGTTCAG
CGATGGTCAGATTCAAAAGATAGATTTTCTGAGTAGTTCCAAAAGTTGGG
TTGCTGAATTTTGTTGTTATTAACAAACAGAATCCAAGGAAGTGTAAAAC
CATCGGAAAACCAATGAAAATTAACGGTACTTGTTTGATACACACCATAC
GTCGTGGGATTTTCATGCACACTTTATCTCCAAAACACGCCAACATTGAG
GGTGAGACGAACGTGCTCCAAATCAAAGTTTCCGACCACGGAAGAATTGT
CGTCCTTTCCAATGTTAAAGACCAAGACATGTCTTGTCATTTCCTGACAG
TGTACACCATCAACAGCCACCTGTTGTACAACCTCCCCTTAAACATGGTG
GTACACGACTTCTGTCTGACCAACAACTTCCTTGTCTTTGGAAGTATGAA
TGGAGCCTTACAGATACGCCATATGAGAGACTTGAACGAGGCTGTAGTTT
CCAAGAAAGTAAAAGCACCCATCCGGACGGTCTTTGCAACTCACAATGGC
TCCCATATCTTCGTCGGTCAAGATGATGGAAATATTCTTGTCATTTGCCC
TTCCAAATTGACCACGTGACCTTAATATCTCTTTTGATTGGATGACTAGT
AACGATCTTTGGTTTCATTGGACGAAACTTAACCTTGGACGGAAACATTT
TACTACAAAGTAGTGGTGTTTGTGCTTATCTAAATATTATATAACGAGTC
GAGCTTATTAAGTTTTTGATTGCGCAGCTGGTGTTCACCCCCGAAATATT
CTTAAAACTATCGATATTTTAACTAATGATTAGATAAATAATACAATTTT
CCATTAGGCGCAGGATTTCTGAGTCAAAGCTGGTTTATTAGTAAAGTTTG
CTTTCTTTGTATATTACTTTCTCCATATGAGATGGagttttataagatac
tttaataattggtcatttgaagtaataaaaatgacgcgtttattagaaaa
agcaacaaaattgttttattactggttaacgactaACCAAATCGAATAAA
AGCTGGTAAAAATTCCATCACGTCCCACTTTCTCAATGAAATTTCCAGGT
ATTGATTGAATGGTTGAAAAATTCATCTTACTCAACCCTACCATTCAATG
TCCAGTTCTAAACCATGGCAATCTGTTCTTTTATGAAAAACTTGCGACAC
TGACTTGGGTCTCATTTCTTCAGGTGAAAAATCACTCCGAGTCTTTcgag
taaaaaaaattcaaatgtttttttttctcaattgatTACTAGTTGCTTGT
ACAAATTGCATTTAgttgtttttcgtttttatttatattttctataccaa
attttaaatttttttatactttgttattgttttttcaaaaaaaaatttcg
gacTTTGCACTTTAAGTAGCGAAAAATGATAGATAATTTAAGACACTTTA
ATAatcgaaaatatattttttgttgatttaatAGGTGTTATTTTCCGGCG
TTCTTGTAATATTCTCGTGTAAATTTCATTGAACTTTTCGCacccttttt
atatattttttttttcaattttagtcattttgtttactttctttttctaa
aattttggggcggatcttttttttttt Run BLAST on NCBI transcript from alignment at scaffold_44:150519..157271+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065484 ID=TCONS_00065484|Name=TCONS_00065484|organism=Clytia hemisphaerica|type=transcript|length=6753bp|location=Sequence derived from alignment at scaffold_44:150519..157271+ (Clytia hemisphaerica)
AACTGGTGAAATACATAGCTGAGAGGGCTGTATTGTGCGCTATGATCATC
GGTGTTTGAGTAAGAAAGTAATAACAACTTACAAAGTCCGGAATGATGGT
GAAAATGATAAACGTGATTACTAACAAAAAGATGGCGAAAAATTGTTTGC
TATTCGTTAGCCTCCTCGGTGGTCTTTTCCGTATGCTTTGGGTTTTTCCG
GCGTTCGTTATATCCGGGTTCACGCagttcttttttctgttttgcttaat
tttgatgaaaatgtatAAATAGGCTGGGATAGCGACAAGGAGGAATATGA
TATCCAGAATCGGAAAGAAAATGGCGTcaatgatgaaaatttccacATCT
TGGAACCAGAAGATAAAGAAGAGTATCCAGTTGAAACACCACGCTAGTAT
GATGAGCTTAATGGTGCTTCTTGTGTTCCAATACAACGGAAACTTGATGC
TCAAATAGATTCGCATAAACCTATCTAATGACATGAAAATTAACGACTCG
TACATCATATAATAAAAACTGTATTGAATCAGTGACATCAAGCGAAAATG
TTGCGGTAAAGCTCGCCGAAAAATGCCAAAGACACATGTCTGTAGTTCAG
CGATGGTCAGATTCAAAAGATAGATTTTCTGAGTAGTTCCAAAAGTTGGG
TTGCTGAATTTTGTTGTTATTAACAAACAGAATCCAAGGAAGTGTAAAAC
CATCGGAAAACCAATGAAAATTGTGATATATTCCATTTCGTGACCAAAGC
CAAGTTTATTAATCAACGACAACTGTCTATAGGTCTTCGGTCTTCCAGAC
CTACCGACATACGCCGAAAGAGCTGCCAGAGTTCAGTAGTTCAACCTTAA
TAGAAGGATTGAAATTAAGCCGTATTATGATAATATCTACTTTCGATATT
CTAGTCTCCGTGTTTGTTTTTTGCTCCGTTTTGTTGTATTAAAGTTTTGA
AGGAAAAAGCAAACTTTTTCATAAAGAAGGATTTCGCAAGTCTTCCtctt
caaaaaagattttcatttttgatatcCCCTTTACATTTTTCATTACTTAG
TCCAATCAAAATAATTAGTTCGAGTTAGgatatcattattttttaattga
aagccCCCTAGGTCTTAGTTATCATTTTAAATGATCTGTGATTAGGAGAA
AAAGACTCCTTGTTCCATTTTTCCTAGCATGCACTGCAACCTACGctttt
tattttggtgaaaTTTCCTGGTCATTTGTTTAGACTACTCGAGTGTTATT
AAACACTAGAATtcgttgaagaagaaaaaaaacagaaaacttaTCCGAAA
TAAAGCCTGCTTGTAAAAGCGAAAGGGTATTCGCCGATCAGATGGAAAAC
ATATTCGTTAGATATCTGAATGGTCAATTAAATGAAAGACTACCATCCCT
ACCATATGTTCCATATTTCCCTTTTGTTGTTCTTCTTTACTTTTCGGTGT
AGTACCCTTTCCTGCATACTCCTgtacattacacgtttttttataaggga
caagtttataaggaacttgaggctgaaaaaggtctgaaaaataaggaata
gttaaggaactgctcaggctcaGAATAAGAAATGAAGTCAAGGAACAGCA
AGAGTCCAACTTGAACTTTTACACATTTACAACAACCTaaataaaaagat
gtaaaaatgtTGCTGAAACATCGTCCAATATGTCACAAAGACAAAAAATG
CTTATGCAGAACACATAGCAAATCCAATCTTAGCAGCTGAGTAACTAAGG
AACTTTGAGGTTGAAACTCTTTGGAAAAATAAGGGACTCAAGCCAAGTTG
AGGGTTCCTTATAAATAATTGTATACCCTGTATACAAATAAATATCCGAT
ACcttaaagaaatgattttagaCCTTTTATCattattagcgaggttaagc
aagaagctatctattacatacggaatctattacgtgagtttttagACTGG
ATCCGAGGCGTTTTAGCCTGATTCCTAAAGCTTCACGGCATAGAAAAAAA
AGTGGTTAAGCAAAAAGGCGATCTATGACGTATGgcgtaatgtttatttt
tccgtATCTCACTTTCGGCCCCaacttataaaattttatttttctttctt
tcttttccagcTTTCTTGTTGGTGGTCTGGTCTATAAAATCCCCTTACTT
TCAATCTTAATCTACTAAGTTTTTTCCCAAGACAaatgttttcacaaaaa
ttaaaactagaCAAGCATAGTCAAGAGTTTTCTCTGTAttacttttatta
tttttatgcaacatttttataaacaaaaaatatgactATGACTTATCATT
TCAATGAATTCTTAACATTGCAATAGaaatatataatttcataatttcat
tccTAGTTTACATAGGTACCAATCAAAAATTACtgctttatttataaaca
aaaaaataatctgtaAGAGCATAGTATATACACTGTATACAGTCTGTCAT
CCTTATTTAGCTGCACTTCTATATGAATGCTTCACCATTAGCATTACCAA
TAAAAAAGTGTGCAAACCAGGTCTCGAGTTTCATATCTGGCAGGTGTTCC
TTCTTATGCTTCTTTACATTCCAAGGTATCAATGTCACCTTTTTAGGAAG
GGAGATGTCTCTTTAGAATCAAACCAAACTTTCTGGAACGTTATAACATT
ATAATGTCGAAGAAGATGGAGGATGACCAGTCAATAAACATTTTTCAGTA
AAGGATTGAGAACTTAAAGCAGTAGCGGTTGTCCAGAAGATAGAGCTTGA
TATAATTTTCGAGAACGGTTTGAAGTTCAGCGGTTGTGTGACATCAGGTT
CTTACTCAGGCTGATTTGTACGTACAATATATGGTTGATGATGGAGAGCA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGAAcaataaataaagatttcttcTGTTATGCTTCGGGTGGA
AGGGTAAATTTATTTGAGCTTGGCAGAGCAGTCTTTTTCGTGTTTGTTGC
TTTGGGTGTGGTTGACATTATAACTTTGTGGCTTCTTCACACTTGATGGT
AGCACCACAGAAAcactaaaaaacatgaaaaagaaatatggttacATGCT
GTTCATTGTAAAGGTTACTTTGGATGTATTTGGACTTTGAGAGAAtataa
aaagaaagataaaaaacagtagaaaaacaaacagacaaaagaaccagaaa
gaaactttctgtttgttttggtttgataaaaaattcagcAAAGGTTATTT
AATTACACTTACATCTTGACCTTCTTTTGAGCAATAAATTCTTTCACTTT
GTTTGTATGCATCATAGTTTCCACAGATgagattcaaaaactttcttctG
TCAGCTCAAACTTGtcagaaagtcaaaaaaaactctaccaaagtttcttt
tctgtttacatttttttcgggTGATTTTTGATCCTAAGCGATTCAGCCCA
ATCTCCGTAAGGTAAATTTCCCTGGATCATACTTATATCCTAATCGATAT
CTATTACGTGAGATTGGAGAATTTCGCGCAATAGATCCACTCCTCAAACT
ATGACGTACAGGTCAAATTTCACGGGACAGAGTTAGCCTTGAGATTTGGG
CGCTAGCCCGCgaaaaactcacgtaatagattccgtacgtaatagatagc
ttcttgcttaacctcgctattaagaatatttatgtttgattttgaaattt
ctcataCTGTCTTTAATTTCTTGTAGAACGGTACTTGTTTGATACACACC
ATACGTCGTGGGATTTTCATGCACACTTTATCTCCAAAACACGCCAACAT
TGAGGGTGAGACGAACGTGCTCCAAATCAAAGTTTCCGACCACGGAAGAA
TTGTCGTCCTTTCCAATGTTAAAGACCAAGACATGGTAAGAAAAATAACT
TGCCTCATGTTTCTTGGAAGatggaaaatgaaattttcttccagcGATAT
TTTTATTATTAGGTGGAGGCTATCCTGAGCCTTCCAGGGTCCCTTTTCCG
ACTGAAGGAATGGTCACAAAATCACTAAATTAGAAAAACTTGCAAGATcg
cattttgatcattttttccaaattttcaaggTGCTAGGTTACGGGAAAAA
TATCAGAGTCGAGTCTGACATTTCGCCAGTTATCcctttaatcttttttt
tgtgATCTAAAAATGCTGCATAGACTTACCTtaccttttgatttttctaa
tatttccaagtatttcttttgaaaaataaaaaactaagtTGTGGAGcttt
aatattttcaatatttgactTGCATAAAGTTGACATTATAAAGCGGTCGT
Gattttataccgggtgcgccacaaaaaagtttctctctttgagactaatt
ttctcgaaatctaaaaattttagaaaaaccattcctatatcattggaaag
aagaaagatagacttaaattttgatgggtcatttattaaattcgattcat
cagatcaaaagttatgctcaattgaatataAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACATTATAAAGCGGTCGTGATTTTGTATTTCTCCTCTTTTCTTA
CTTTTCAGTCTTGTCATTTCCTGACAGTGTACACCATCAACAGCCACCTG
TTGTACAACCTCCCCTTAAACATGGTGGTACACGACTTCTGTCTGACCAA
CAACTTCCTTGTCTTTGGAAGTATGAATGGAGCCTTACAGATACGCCATA
TGAGAGAGTAAGTTCCCCTATTCAAACTTCACATTGTttaaaaactgctg
acgtcatcaaaatattgTGCAAAAGTTTCATTccttttcaatcattttta
aagaatttgccagattcttcttcttctatATCTTCTTGTTCTTCAAAGTG
GTTTCCATATTTTGAcattaaaattttctgaaaatatctCATCCACTTGT
TTTCAGCTTGAACGAGGCTGTAGTTTCCAAGAAAGTAAAAGCACCCATCC
GGACGGTCTTTGCAACTCACAATGGCTCCCATATCTTCGTCGGTCAAGAT
GATGGAAATATTCTTGTCATTTGCCCTTCCAAATTGACCACGTGACCTTA
ATATCTCTTTTGATTGGATGACTAGTAACGATCTTTGGTTTCATTGGACG
AAACTTAACCTTGGACGGAAACATTTTACTACAAAGTAGTGGTGTTTGTG
CTTATCTAAATATTATATAACGAGTCGAGCTTATTAAGTTTTTGATTGCG
CAGCTGGTGTTCACCCCCGAAATATTCTTAAAACTATCGATATTTTAACT
AATGATTAGATAAATAATACAATTTTCCATTAGGCGCAGGATTTCTGAGT
CAAAGCTGGTTTATTAGTAAAGTTTGCTTTCTTTGTATATTACTTTCTCC
ATATGAGATGGagttttataagatactttaataattggtcatttgaagta
ataaaaatgacgcgtttattagaaaaagcaacaaaattgttttattactg
gttaacgactaACCAAATCGAATAAAAGCTGGTAAAAATTCCATCACGTC
CCACTTTCTCAATGAAATTTCCAGGTATTGATTGAATGGTTGAAAAATTC
ATCTTACTCAACCCTACCATTCAATGTCCAGTTCTAAACCATGGCAATCT
GTTCTTTTATGAAAAACTTGCGACACTGACTTGGGTCTCATTTCTTCAGG
TGAAAAATCACTCCGAGTCTTTcgagtaaaaaaaattcaaatgttttttt
ttctcaattgatTACTAGTTGCTTGTACAAATTGCATTTAgttgtttttc
gtttttatttatattttctataccaaattttaaatttttttatactttgt
tattgttttttcaaaaaaaaatttcggacTTTGCACTTTAAGTAGCGAAA
AATGATAGATAATTTAAGACACTTTAATAatcgaaaatatattttttgtt
gatttaatAGGTGTTATTTTCCGGCGTTCTTGTAATATTCTCGTGTAAAT
TTCATTGAACTTTTCGCaccctttttatatattttttttttcaattttag
tcattttgtttactttctttttctaaaattttggggcggatctttttttt
ttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065484-exon-scaffold_44-1491911889:150519..151240 | TCONS_00065484-exon-scaffold_44-1491911889:150519..151240 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1510915933:150519..151240 | TCONS_00065484-exon-scaffold_44-1510915933:150519..151240 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1575043694:150519..151240 | TCONS_00065484-exon-scaffold_44-1575043694:150519..151240 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1491911889:154345..154503 | TCONS_00065484-exon-scaffold_44-1491911889:154345..154503 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1510915933:154345..154503 | TCONS_00065484-exon-scaffold_44-1510915933:154345..154503 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1575043694:154345..154503 | TCONS_00065484-exon-scaffold_44-1575043694:154345..154503 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1491911889:155777..155925 | TCONS_00065484-exon-scaffold_44-1491911889:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1510915933:155777..155925 | TCONS_00065484-exon-scaffold_44-1510915933:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1575043694:155777..155925 | TCONS_00065484-exon-scaffold_44-1575043694:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1491911889:156125..157271 | TCONS_00065484-exon-scaffold_44-1491911889:156125..157271 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1510915933:156125..157271 | TCONS_00065484-exon-scaffold_44-1510915933:156125..157271 | Clytia hemisphaerica | exon |
| TCONS_00065484-exon-scaffold_44-1575043694:156125..157271 | TCONS_00065484-exon-scaffold_44-1575043694:156125..157271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:150519..157271 + |
Blast
The following BLAST results are available for this feature:
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