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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065486 ID=TCONS_00065486|Name=TCONS_00065486|organism=Clytia hemisphaerica|type=transcript|length=1683bp
ATCTATTACGTGAGATTGGAGAATTTCGCGCAATAGATCCACTCCTCAAA
CTATGACGTACAGGTCAAATTTCACGGGACAGAGTTAGCCTTGAGATTTG
GGCGCTAGCCCGCgaaaaactcacgtaatagattccgtacgtaatagata
gcttcttgcttaacctcgctattaagaatatttatgtttgattttgaaat
ttctcataCTGTCTTTAATTTCTTGTAGAACGGTACTTGTTTGATACACA
CCATACGTCGTGGGATTTTCATGCACACTTTATCTCCAAAACACGCCAAC
ATTGAGGGTGAGACGAACGTGCTCCAAATCAAAGTTTCCGACCACGGAAG
AATTGTCGTCCTTTCCAATGTTAAAGACCAAGACATGTCTTGTCATTTCC
TGACAGTGTACACCATCAACAGCCACCTGTTGTACAACCTCCCCTTAAAC
ATGGTGGTACACGACTTCTGTCTGACCAACAACTTCCTTGTCTTTGGAAG
TATGAATGGAGCCTTACAGATACGCCATATGAGAGACTTGAACGAGGCTG
TAGTTTCCAAGAAAGTAAAAGCACCCATCCGGACGGTCTTTGCAACTCAC
AATGGCTCCCATATCTTCGTCGGTCAAGATGATGGAAATATTCTTGTCAT
TTGCCCTTCCAAATTGACCACGTGACCTTAATATCTCTTTTGATTGGATG
ACTAGTAACGATCTTTGGTTTCATTGGACGAAACTTAACCTTGGACGGAA
ACATTTTACTACAAAGTAGTGGTGTTTGTGCTTATCTAAATATTATATAA
CGAGTCGAGCTTATTAAGTTTTTGATTGCGCAGCTGGTGTTCACCCCCGA
AATATTCTTAAAACTATCGATATTTTAACTAATGATTAGATAAATAATAC
AATTTTCCATTAGGCGCAGGATTTCTGAGTCAAAGCTGGTTTATTAGTAA
AGTTTGCTTTCTTTGTATATTACTTTCTCCATATGAGATGGagttttata
agatactttaataattggtcatttgaagtaataaaaatgacgcgtttatt
agaaaaagcaacaaaattgttttattactggttaacgactaACCAAATCG
AATAAAAGCTGGTAAAAATTCCATCACGTCCCACTTTCTCAATGAAATTT
CCAGGTATTGATTGAATGGTTGAAAAATTCATCTTACTCAACCCTACCAT
TCAATGTCCAGTTCTAAACCATGGCAATCTGTTCTTTTATGAAAAACTTG
CGACACTGACTTGGGTCTCATTTCTTCAGGTGAAAAATCACTCCGAGTCT
TTcgagtaaaaaaaattcaaatgtttttttttctcaattgatTACTAGTT
GCTTGTACAAATTGCATTTAgttgtttttcgtttttatttatattttcta
taccaaattttaaatttttttatactttgttattgttttttcaaaaaaaa
atttcggacTTTGCACTTTAAGTAGCGAAAAATGATAGATAATTTAAGAC
ACTTTAATAatcgaaaatatattttttgttgatttaatAGGTGTTATTTT
CCGGCGTTCTTGTAATATTCTCGTGTAAATTTCATTGAACTTTTCGCacc
ctttttatatattttttttttcaattttagtcattttgtttactttcttt
ttctaaaattttggggcggatcttttttttttt Run BLAST on NCBI transcript from alignment at scaffold_44:154117..157271+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065486 ID=TCONS_00065486|Name=TCONS_00065486|organism=Clytia hemisphaerica|type=transcript|length=3155bp|location=Sequence derived from alignment at scaffold_44:154117..157271+ (Clytia hemisphaerica)
ATCTATTACGTGAGATTGGAGAATTTCGCGCAATAGATCCACTCCTCAAA
CTATGACGTACAGGTCAAATTTCACGGGACAGAGTTAGCCTTGAGATTTG
GGCGCTAGCCCGCgaaaaactcacgtaatagattccgtacgtaatagata
gcttcttgcttaacctcgctattaagaatatttatgtttgattttgaaat
ttctcataCTGTCTTTAATTTCTTGTAGAACGGTACTTGTTTGATACACA
CCATACGTCGTGGGATTTTCATGCACACTTTATCTCCAAAACACGCCAAC
ATTGAGGGTGAGACGAACGTGCTCCAAATCAAAGTTTCCGACCACGGAAG
AATTGTCGTCCTTTCCAATGTTAAAGACCAAGACATGGTAAGAAAAATAA
CTTGCCTCATGTTTCTTGGAAGatggaaaatgaaattttcttccagcGAT
ATTTTTATTATTAGGTGGAGGCTATCCTGAGCCTTCCAGGGTCCCTTTTC
CGACTGAAGGAATGGTCACAAAATCACTAAATTAGAAAAACTTGCAAGAT
cgcattttgatcattttttccaaattttcaaggTGCTAGGTTACGGGAAA
AATATCAGAGTCGAGTCTGACATTTCGCCAGTTATCcctttaatcttttt
tttgtgATCTAAAAATGCTGCATAGACTTACCTtaccttttgatttttct
aatatttccaagtatttcttttgaaaaataaaaaactaagtTGTGGAGct
ttaatattttcaatatttgactTGCATAAAGTTGACATTATAAAGCGGTC
GTGattttataccgggtgcgccacaaaaaagtttctctctttgagactaa
ttttctcgaaatctaaaaattttagaaaaaccattcctatatcattggaa
agaagaaagatagacttaaattttgatgggtcatttattaaattcgattc
atcagatcaaaagttatgctcaattgaatataAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNACATTATAAAGCGGTCGTGATTTTGTATTTCTCCTCTTTTCT
TACTTTTCAGTCTTGTCATTTCCTGACAGTGTACACCATCAACAGCCACC
TGTTGTACAACCTCCCCTTAAACATGGTGGTACACGACTTCTGTCTGACC
AACAACTTCCTTGTCTTTGGAAGTATGAATGGAGCCTTACAGATACGCCA
TATGAGAGAGTAAGTTCCCCTATTCAAACTTCACATTGTttaaaaactgc
tgacgtcatcaaaatattgTGCAAAAGTTTCATTccttttcaatcatttt
taaagaatttgccagattcttcttcttctatATCTTCTTGTTCTTCAAAG
TGGTTTCCATATTTTGAcattaaaattttctgaaaatatctCATCCACTT
GTTTTCAGCTTGAACGAGGCTGTAGTTTCCAAGAAAGTAAAAGCACCCAT
CCGGACGGTCTTTGCAACTCACAATGGCTCCCATATCTTCGTCGGTCAAG
ATGATGGAAATATTCTTGTCATTTGCCCTTCCAAATTGACCACGTGACCT
TAATATCTCTTTTGATTGGATGACTAGTAACGATCTTTGGTTTCATTGGA
CGAAACTTAACCTTGGACGGAAACATTTTACTACAAAGTAGTGGTGTTTG
TGCTTATCTAAATATTATATAACGAGTCGAGCTTATTAAGTTTTTGATTG
CGCAGCTGGTGTTCACCCCCGAAATATTCTTAAAACTATCGATATTTTAA
CTAATGATTAGATAAATAATACAATTTTCCATTAGGCGCAGGATTTCTGA
GTCAAAGCTGGTTTATTAGTAAAGTTTGCTTTCTTTGTATATTACTTTCT
CCATATGAGATGGagttttataagatactttaataattggtcatttgaag
taataaaaatgacgcgtttattagaaaaagcaacaaaattgttttattac
tggttaacgactaACCAAATCGAATAAAAGCTGGTAAAAATTCCATCACG
TCCCACTTTCTCAATGAAATTTCCAGGTATTGATTGAATGGTTGAAAAAT
TCATCTTACTCAACCCTACCATTCAATGTCCAGTTCTAAACCATGGCAAT
CTGTTCTTTTATGAAAAACTTGCGACACTGACTTGGGTCTCATTTCTTCA
GGTGAAAAATCACTCCGAGTCTTTcgagtaaaaaaaattcaaatgttttt
ttttctcaattgatTACTAGTTGCTTGTACAAATTGCATTTAgttgtttt
tcgtttttatttatattttctataccaaattttaaatttttttatacttt
gttattgttttttcaaaaaaaaatttcggacTTTGCACTTTAAGTAGCGA
AAAATGATAGATAATTTAAGACACTTTAATAatcgaaaatatattttttg
ttgatttaatAGGTGTTATTTTCCGGCGTTCTTGTAATATTCTCGTGTAA
ATTTCATTGAACTTTTCGCaccctttttatatattttttttttcaatttt
agtcattttgtttactttctttttctaaaattttggggcggatctttttt
ttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065486-exon-scaffold_44-1491911889:154117..154503 | TCONS_00065486-exon-scaffold_44-1491911889:154117..154503 | Clytia hemisphaerica | exon |
| TCONS_00065486-exon-scaffold_44-1510915933:154117..154503 | TCONS_00065486-exon-scaffold_44-1510915933:154117..154503 | Clytia hemisphaerica | exon |
| TCONS_00065486-exon-scaffold_44-1575043694:154117..154503 | TCONS_00065486-exon-scaffold_44-1575043694:154117..154503 | Clytia hemisphaerica | exon |
| TCONS_00065486-exon-scaffold_44-1491911889:155777..155925 | TCONS_00065486-exon-scaffold_44-1491911889:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065486-exon-scaffold_44-1510915933:155777..155925 | TCONS_00065486-exon-scaffold_44-1510915933:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065486-exon-scaffold_44-1575043694:155777..155925 | TCONS_00065486-exon-scaffold_44-1575043694:155777..155925 | Clytia hemisphaerica | exon |
| TCONS_00065486-exon-scaffold_44-1491911889:156125..157271 | TCONS_00065486-exon-scaffold_44-1491911889:156125..157271 | Clytia hemisphaerica | exon |
| TCONS_00065486-exon-scaffold_44-1510915933:156125..157271 | TCONS_00065486-exon-scaffold_44-1510915933:156125..157271 | Clytia hemisphaerica | exon |
| TCONS_00065486-exon-scaffold_44-1575043694:156125..157271 | TCONS_00065486-exon-scaffold_44-1575043694:156125..157271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:154117..157271 + |
Blast
The following BLAST results are available for this feature:
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