TCONS_00065966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065966
Unique NameTCONS_00065966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065966 ID=TCONS_00065966|Name=TCONS_00065966|organism=Clytia hemisphaerica|type=transcript|length=1340bp
AGTATTTACGAAATGTTAGCCTGGAAACTGATTCACGTCAAGGGCCTGGG
CCTAAATTTTTGGACTTATGCCGGCGTGAGTTGGAAACCCTGCGTGCAGA
GCTTGACGAGCAGGAAGAACAAACGTTAAAACAGAAACGCGAGATCAATG
ATTTACGCAACACAAATGATACCCTGGAATCGGATGTCAACCGTCTCCAG
AAACAGAAAAAACGTATGCAAAATGAGTTGGACCAAATTAACGCCATTTT
TGATACGGAGAAAAGTGAGATTGCCGATTTGCAGGCCAAATTGAAACGGG
CTAACAAAATTGTTGCCGAGGAACGCCGAATTCGTGAACAATTACAAGAA
GCTAAATCAGATCTCATTATCGAGAAAACAAACCTCGAAAACAAGATGGA
AACTTTAGAGGACGATAAGCGGGCATTAGACCGTCAAGTGACAGACGGTG
AGATCGCCCGCAAGGCGCTCCGTCTAGAATGCGAGAACCTTGGTGACGCA
CGGGATAACGCTAAATCGATGATAAACAATTTGGAGAAGGATAAAAGACA
TGCTGATATCTTGTTGGAAGAAGCACGAAAAACGAACGCTAGTTTTGAAT
CACAACTCGGAGAAGTAGAACAAAACTACATGACTCTTCAAGGACAAAAC
CAAGCGAACAAGGAACAGTATGCAAGAGACATCTCACGAAAAGACGATAA
AGTCGAAGAATTGAAACGAGCTGTCGATAAAGCTGAACGTGATTTGAAGG
TGACCTTagaagaagagaaaaagaagCGTGAACAAATGATGGCATCACGT
AAAGGATTAGAATCACAAATCACTGGTCTACAAATTGAACTGGATGAGGC
AAACAGACGAAACGATGATCAACAAAAAGTCATCCGCAAATACCAAACTC
AACTTGCTCAATTGAAAGACTTACAAATGGAGTTGGGAGAAATGAACGAA
CTGAAAGAAAGCTTATTACGAGAACTGAAGGAGATGGAAAAGAAAGCAAG
ATCAGCTCAATCGGAAAAAGACTCTGTTATCGCCAACCTTCAACAGAGCG
AACNGAGATCAGCTCAATCGGAAAAAAACTCTGTTATCGCCAACCTTCAA
CAGAGCGAACGCGCTAAACGCGCGGCGGAAGACGAAGTGGTTGAGATGCA
ACAAGAAGTGGAAGCTCAAAAAAGTTTACTCAGACAACAGGCTTTGGACG
AGAAACGAATCCTTGATGATAAATATAACGAACTGAAGATGGATTATGAT
GATGAAAAACAACGAGCTGATGAAATGGATGTTAAAGCACGCAAATACCA
GAAAGAAGCAGAAGCAGCCAGCAGTAACTATGCCAACGAA
Run BLAST on NCBI

transcript from alignment at scaffold_448:457922..463586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065966 ID=TCONS_00065966|Name=TCONS_00065966|organism=Clytia hemisphaerica|type=transcript|length=5665bp|location=Sequence derived from alignment at scaffold_448:457922..463586- (Clytia hemisphaerica)
AGTATTTACGAAATGTTAGCCTGGAAACTGATTCACGTCAAGGGCCTGGG CCTAAATTTGTAAGTGATTGTTATGTTAGTAGACTTGTTGTTGATTCTGT TTGGTGTAAAATGAAGGGCCTACCTTGGATAATAAACCTTTCTTAGTATT ATGGTCAGTAAATAACACAGCTTGGGAGTGGTCAAAAAGGGGAAAGGGGC CCACAACTTGGCTATTTACTGTCCATTTCTAGTATTCAGAATAAGAGAAA TCTTAGGTTTTGACTTCGGATTATTATCTTTTTTGACAATTGAAAGTATG CTAGCGTTGATTAGAAGCTCCGATAAACTTTTCTTAAAAAAAACATATTT TGAAATTGACTATTTTCTCTTTCCATCCATAGTCGTTTGCCAGTATGAGC TAGAAGCTGTGGAAAACTTTTCTTAGTGCTAAGTAAATTCGGAATAGCGG GATAAATAAAATCTTATTATGTTCTCTTTACATAGCCGTTAGTTATATCG ACGTGAATTACAAGCACCGTGAAAAACTTTTCCCAGTGATTAGTGAAATC GGAATAATTGGATTCTAAAATCGGATCATCTTCTCTCCCTTCATATTTAG ACTTTTCTTGGTGATTACTAAAATCGGGAAAATCGTATTCTAAAATCGGA TTATTTTTCTCTCTTCGTAGTTGGACTTATGCCGGCGTGAGTTGGAAACC CTGCGTGCAGAGCTTGACGAGCAGGAAGAACAAACGTTAAAACAGAAACG CGAGATCAATGATTTACGCAACACAAATGATACCCTGGAATCGGATGTCA ACCGTCTCCAGAAACAGAAAAAACGTATGCAAAATGAGTTGGACCAAATT AACGCCATTTTTGATACGGAGAAAAGTGAGATTGCCGATTTGCAGGCCAA ATTGAAACGGGCTAACAAAGTAAGTTGTGTAATGGTGAAAATCCTTTCTC GGTGTTGATCGAAATTCTCGCCCTAGGAAATACAAAGTCGTTAGGTCGTT TTCTTTAAGAAATACTAAACACAGGACAGGAATGGACCAGGAATTGTAGT TGTGGAGTTTTAGTCCGAACGAGCTATTGTTTTATTTCGAATTACAGAAA TATTCAAATAATGGCTCGAATTAGGGAGAGTTGAGTGTAAAAGTTTTCAA AACTAATTTTGACTTTTTTTCGACTTATAATTTTAGTATATACCTCATCT CTTCATTCCGGTATTCATTCTTGTTTAGATTGTTGCCGAGGAACGCCGAA TTCGTGAACAATTACAAGAAGCTAAATCAGATCTCATTATCGAGAAAACA AACCTCGAAAACAAGGTATAAAGATTTCCCAAGGTCATATTCTCTCCGGG CCCTCCTTATCAATATTGTAGTTATAGTGAACCATGCATGAATTATAAGA TTTAATATTCTAAATCAATACAAATTTTTACTGCCAGATCTGTCAAATCT TTCAGACATTGGATATTTACTAAAATCTTTCCAAGTCGATTTTACGTTAT GTATTAATTTTTGTAAGCCATTCCTTTAAACTTACCTTTTTATAGATGGA AACTTTAGAGGACGATAAGCGGGCATTAGACCGTCAAGTGACAGACGGTG AGATCGCCCGCAAGGCGCTCCGTCTAGAATGCGAGAACCTTGGTGACGCA CGGGATAACGCTAAATCGATGATAAACAATTTGGAGAAGGATAAAAGACA TGCTGATATCTTGTTGGAAGAAGCACGAAAAACGAACGCTAGTTTTGAAT CACAACTCGGAGAAGTAGAACAAAACTACATGACTCTTCAAGGTAAATCT ATACTATCTAGAACTGAACATTACCGAGTTTATGTATGTGTGTTTTTCAG CGACGGAGACGGTAAGGTTCTAATTTGGCTAGATCCTAACCAGCCGAAGA CGACAGTAAATCAGTACTTTTACCGTCCTCGATTTTGCGGAACTGCGAGT TATCCCAAATCGCTTCAGTCACTCTACCATCCTCAAAAGTGCAAAACATA AATTCGCTATTACATGATGTTGCAGAATAGATTTGGATTCAAATTTAACA AGAAATTGGTAAAAGTTAGGTGATTGACTGGCTCGGATACAGAGAGAGGT TATAACCAATGGAGGAGAGTGAACTTTATTACCGTATTACCTTATATGGA AACTAATTACTCTCCGTGAATAAGATAGCCTACCTCCTGTATCCGACCCT GATTGACGATGAAGAAATCTATACCTTCGAAATGGTTAACATTAAACAAA GAACTCATATTTTTCAAAAAAGCTATGTCGACGTTTAATATGAATGGCAT AGAGTACAAAAAACCTTTTTACATTTCTAGGACAAAACCAAGCGAACAAG GAACAGTATGCAAGAGACATCTCACGAAAAGACGATAAAGTCGAAGAATT GAAACGAGCTGTNCCAAAATGGTTAACAATTAACATTAAGCAAAGAACTC ATATTTTTCAAAAAAGCTATGTCGACGTTTAATATGAATGGCATAGAGTA GAAAAAGCCTTTTTACATTTCTAGGACAAAACCAAGCAAACAAGGAACAG TATGCAAGAGACATCTCACGAAAAGACGATAAAGTCGAAGAATTGAAACG AGCTGTCGATAAAGCTGTAAGTTTACCCCCTATTCATCGCTTGTTTCTAG TATTTTGTTACCATTCTAGCCACCATTCAATGCTTAAGTAGTAAGTAAGT CTGCGACCGCAGCCGGAGGCGACCCGAAGGCTCCTCTTTCGATAACTATC TACCCGAAGGTAGGGGAGGGCGCCACTCTTTCTCCCTGGATTGCTCCATT TACCCTTTATCCTTCTCTTAATTGCTGAGCATCCAGCAGAGAGGCATCAA GTACCATTTTGGTATGACCCAGCTGGAGATTGAACCCACAACCTCGCGCA CCGTAGTTGGATACTCTACCACTGCACCACGGTCGCATTATATGCTTAAA GGCCAGGGTAACTGGTCCAGCATTTCATCCAATATACCATTTTTTCAAAT GTTTGGTGAAATGTTGAACTGATTTGTGGCAATATAAAATTTTCAACAAA AAACGAAAATTAAATTAAATTAAAACGAAGAAAAAAACGTGGTTGCTGGG CATCAAACATTTGATCCAACATTTTCGGCAAGACCTGATCTTTAGTTTCT CATCCAATATTGGAAAATAATGTTGGATTGAATGTTGGTCTGGCTTACTC TTTCCTTTAAATATAAAACTGAATTATTTTGTATATTTACCATTATTAGG AACGTGATTTGAAGGTGACCTTAGAAGAAGAGAAAAAGAAGCGTGAACAA ATGATGGCATCACGTAAAGGATTAGAATCACAAATCACTGGTCTACAAAT TGAACTGGATGAGGCAAACAGACGAAACGATGATCAACAAAAAGTCATCC GCAAATACCAAGTAAGATATGACAAACAGTTTTTGTAAAGAACATTTTGC CTTTTAATTCCTTCAGTACTGTGCAAAATTTAAAGATTGTTTCATCATAG CCGCTGTGCGTCAACTTCAAATAAAATTTTCTTGGCTTTGGCAAAAGCAA AATAGGTTATGTTAGGGTTCGGTTGAAAGCTCTTTTCAATATTTACTATT TTGAATTAGGTCTTCAATCAAAATTACTTGTAATGAAAGCTTATTAAATA CTGTTCCAAAAAAAAAAAAATCTGACAGTCTGCTCATAAAGCATATAAGA TACGACGAAAAGTAATACCTCGTTGAAAAGATAATTTTAGGGCTTTAAAA TAATTTACTTGTATTTCAAACCAATTCTTAGTTCCCGTTAGGTAAAACAC TTTCTATAATTCGAACAAATTAGACCTCCAGTTGAGTTCGAATTAGCGAG ATTTAATCGAAGTATACGTTTCTCTCATTTTCAGACTCAACTTGCTCAAT TGAAAGACTTACAAATGGAGTTGGGAGAAATGAACGAACTGAAAGAAAGC TTATTACGAGAACTGAAGGAGATGGAAAAGAAAGCAAGATCAGCTCAATC GGAAAAAGACTCTGTTATCGCCAACCTTCAACAGAGCGAACNGAGATCAG CTCAATCGGAAAAAAACTCTGTTATCGCCAACCTTCAACAGAGCGAACGC GCTAAACGCGCGGTAAGTAAGATCTGATTTTAGTCTAACATGCTAGACAA CTAATTCAGACATGGAAAGGACAAATTGTACTGTAAGTTGGTCTAATATG CAAATCTAATATCGACATCCCTCGTCTGATTCCGACACCCTTCTTTAAGA GACAGGAATAATATGAAAGCTTGAATCGCTGATTGAAAAAGGATTATTCC TCACTGACCACTAAGCAAAGAAAAACAGTTTCAACCTTTCTATCAATTTT TAGCTGATAAAAAGGGTTTCGGGATTAGATGAGGGATGTCGACATTAGAC CAAATTACGGTTGCATAAAAACTGATACTATCCCGTTACAATTATAGTAT TATTATTATAAGACAACGATATTGCTGTCTAATATAATCTAGACTTTCTG TCTCCCGGTGTTTTCAGTTTTTATCCCGAAAATGAAGACATCGAGTTGAT TCTAGTCGGCTCACTGCTGACTTTTGTCAAAAATCGAGGGAGGACAAGAA AGAAAGTCAACCGTCTAAACTAGAAATAAGAAAATATGACGTGTATTCAG ATTTGTAGACTTCTATATGATAGGCATGTACACATGATCACAGTGCAGGC CGTTTTGGTTTAGCTTATATAACGGCCCATAAATGCTCTCGGCTTTTATT TGCTTCTATGGGAACTATTTGTGTTTTTAAAATCCCCCCTCCATAAGCCT TAGAAGGACTTCTTACCCTAATTTTTATTTCATTCCAAGTTGAATCTCGA GTTTTTGTGATCAAACCTGTTTCTTGACATTCTTCTTTTCATTCACGCTA GGCGGAAGACGAAGTGGTTGAGATGCAACAAGAAGTGGAAGCTCAAAAAA GTTTACTCAGACAACAGGCTTTGGACGAGAAACGAATCCTTGATGATAAA TATAACGAACTGAAGATGGATTATGATGATGAAAAACAACGAGCTGATGA AATGGATGTTAAAGTAAGTTTCACCGAAAAGCCTGTTAGAAAAGATTGAA TGATCGAGACATCCCTAAAAAGTTTCCCATACTAAAGCTTGTTGGAAAAG TTTGAATGATCGAGACATCCCTGACTCGCAATTACAGTCTCACTATTTAT CAATATTACCTAGAAATAACATAGGAAAAGACTTAAAACTAAAAGTAAAA TTGTTGTTTAACGGATTTCCGTTTCAGTCAAGTATGTATAGATGCTTTTC CGCTTTAAAATTCTGCATAGTTCCCAAAATTTCAAAAAACTTATGGTAAT TTGCTGTGTAAAATCCATTTTTCGTCTCTGACGAAAAACCATGCTTTGGC CACTGCATTTTACTTGCAGATGTTTAAATTTAACATCCCTAGGAAAAGAG TTAGTTTACAACTTACATAGAAATTTTTTTCATACAATGGAGCCTCTTTG ACTGGAATATCTCCTTAACTCGAACACGTTTTCTTGTCCTTTCAGTTAAC AATGGCTTATAAAACTTACTCCATAACTCCAATTTTTTTTACTTCTAACC CTCCTTTCTAGGCACGCAAATACCAGAAAGAAGCAGAAGCAGCCAGCAGT AACTATGCCAACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041322XLOC_041322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065966-exon-scaffold_448-1575043694:463528..463586TCONS_00065966-exon-scaffold_448-1575043694:463528..463586Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:462668..462916TCONS_00065966-exon-scaffold_448-1575043694:462668..462916Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:462272..462358TCONS_00065966-exon-scaffold_448-1575043694:462272..462358Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:461795..462041TCONS_00065966-exon-scaffold_448-1575043694:461795..462041Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:461219..461256TCONS_00065966-exon-scaffold_448-1575043694:461219..461256Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:460971..461024TCONS_00065966-exon-scaffold_448-1575043694:460971..461024Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:460176..460337TCONS_00065966-exon-scaffold_448-1575043694:460176..460337Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:459475..459702TCONS_00065966-exon-scaffold_448-1575043694:459475..459702Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:458524..458685TCONS_00065966-exon-scaffold_448-1575043694:458524..458685Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1575043694:457922..457975TCONS_00065966-exon-scaffold_448-1575043694:457922..457975Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:463528..463586TCONS_00065966-exon-scaffold_448-1510915933:463528..463586Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:462668..462916TCONS_00065966-exon-scaffold_448-1510915933:462668..462916Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:462272..462358TCONS_00065966-exon-scaffold_448-1510915933:462272..462358Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:461795..462041TCONS_00065966-exon-scaffold_448-1510915933:461795..462041Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:461219..461256TCONS_00065966-exon-scaffold_448-1510915933:461219..461256Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:460971..461024TCONS_00065966-exon-scaffold_448-1510915933:460971..461024Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:460176..460337TCONS_00065966-exon-scaffold_448-1510915933:460176..460337Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:459475..459702TCONS_00065966-exon-scaffold_448-1510915933:459475..459702Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:458524..458685TCONS_00065966-exon-scaffold_448-1510915933:458524..458685Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1510915933:457922..457975TCONS_00065966-exon-scaffold_448-1510915933:457922..457975Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:463528..463586TCONS_00065966-exon-scaffold_448-1491911889:463528..463586Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:462668..462916TCONS_00065966-exon-scaffold_448-1491911889:462668..462916Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:462272..462358TCONS_00065966-exon-scaffold_448-1491911889:462272..462358Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:461795..462041TCONS_00065966-exon-scaffold_448-1491911889:461795..462041Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:461219..461256TCONS_00065966-exon-scaffold_448-1491911889:461219..461256Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:460971..461024TCONS_00065966-exon-scaffold_448-1491911889:460971..461024Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:460176..460337TCONS_00065966-exon-scaffold_448-1491911889:460176..460337Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:459475..459702TCONS_00065966-exon-scaffold_448-1491911889:459475..459702Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:458524..458685TCONS_00065966-exon-scaffold_448-1491911889:458524..458685Clytia hemisphaericaexon
TCONS_00065966-exon-scaffold_448-1491911889:457922..457975TCONS_00065966-exon-scaffold_448-1491911889:457922..457975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:457922..463586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.461594 0.581916 0 0.322204 1.97688 1.09751 1.31418 0.222867 0.134719 0 0 0.425963 23.1743 21.6587 0 0.404811 92.6304 89.7189 34.1658 34.2857 55.7026 59.6251 11.4712 21.1267 93.4573 54.7896 1.11465 0.329469 1.62647 1.00088
Blast
BLAST of TCONS_00065966 vs. Swiss-Prot (Human)
Match: MYH10 (Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.875e-16
Identity = 92/313 (29.39%), Postives = 158/313 (50.48%), Query Frame = 3
Query:  189 NRLQKQKKRMQNELDQINAIFDTEKSEIADLQAKLKRANKIVAEERRIREQLQEAKSDLIIEKTNLENKMETLEDDKRALDRQVTDGEIARKALRLECENLGDARDNAKSMINNLEKDKRHADILLEEARKTNASFESQLGEVEQNYMTLQGQNQANKEQYARDISRKDDKVEELKRAVDKAERDLKVTLEEEKKKREQMMASRKGLESQITGLQIELDEANRRNDDQQKVIRKYQTQLAQLKDLQMELGEMNXXXXXXXXXXXXXXXXARSAQSEKDSVIANLQQSEX--RSAQSEKNSVIANLQQSERAKR 1121
            ++L+K K R+Q ELD +    D ++   ++L+ K K+ ++++AEE+ I  +  E +     E    E K  +L            + E   K LR + E+L  ++D+    ++ LEK KR  +  +EE R      E +L   E   + L+   QA K Q+ RD+  +D++ EE KR + K  R+L+  LE+E+K+R   +AS+K +E  +  L+ +++ AN+  D+  K +RK Q   AQ+KD Q EL E                     A++ +D + A  ++SE   +S ++E   +   L  SERA+R
Sbjct: 1416 DKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQKKFDQLLAEEKSISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARDEVIKQLRKLQ---AQMKDYQRELEE---------------------ARASRDEIFAQSKESEKKLKSLEAEILQLQEELASSERARR 1704          
The following BLAST results are available for this feature:
BLAST of TCONS_00065966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYH101.875e-1629.39Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3[more]
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