TCONS_00066000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066000
Unique NameTCONS_00066000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066000 ID=TCONS_00066000|Name=TCONS_00066000|organism=Clytia hemisphaerica|type=transcript|length=1465bp
CAAGATGTAGATCAAAATAGTACTGCTGATCAAAAGTTATTCTTCATGGT
TTTATCTCAAGTTTTCACATCAATCACAAGTAAAAAATTAAAtgcagttt
ttgaatttttcaacaacaaaGAGTATAACATCGACAATCACATCTTGAAA
GCAATCAAAACCACACTTTCATCCCATGGTGGTGTCAAAGTCAAAGATGA
AGCCAAGCTACTACAGCTTAATCGAACCTTGATGATGAACGTTGCAGAAA
GTTATGATTTGGATTCATTCAAAATTCTTTGGCAGTTCCAGTCCTCTCTA
CATTCTGATCACATTCTGAAATTTATCTCAAATCTGATCTTATTGATCAA
CACTTTATCTGGCAAATTTGGAGTAAATGAAGCTGCTTGTTTTGGACTGT
CGAGAGATGTTGTTGCTTCTCTTGATGTCGATAACTTTTTAGAGAATGAC
CCAGTTCCATTCATGTTGGAAATGTTTGTAGATGGTATCAAACGAAATCG
AAAGTTTGATGTTTCATTGACCAGTCTTTGTAATGCATTCTTTGTGAAGG
TCTTGATCCAGAAAATTTCAGAAAACAAAGATGAATTTGATGAAGTTAAA
CAGAACATCTTCAAGACCATTGTCCCTTTTGCTACCAATAAAAAGTCAAA
TGCTTTAAGCAACACTTGTCGTGAACTAACGAAAACGTTTTTCCAGACAT
GTTTCCAAGATACAGAACAAGTCCGTCTGTTCACCGGCCAACTATGTATC
AACGAACTATTTGCGAACCAAAACATCAGCAAGGTGGATTTGGAAATTTC
GTTGAGCTGTTTATCAATTGTTGGTCTGTTGGTTGAAAGTGCTGAGAATG
CAGCAATCACTGATCTGGAAATTGGACTACAAATCGGCTTATTATCCTTC
CCAAACAAGACAGTACGAGAAGTAGTGTGCGACATAATGGCGAAATATGG
TGAAGTATTGAAGTCAAATCATCCTTGGTCATTCTTCACAAATCTTGTTG
TGGAAAATACTAACGAAATCGTTTTGGATGATACCCATGCTAAAAGGATG
TTTGGCTCTACACTGAAAGCATCTTCAACTCGGAGAAAAAGTGAATTTGA
TATGTTCTCTAAGAAGGATAtaccaaagaaagaaaaacgaaagaCTGCAG
CATCAGAACATTGTATCTCTTGTTTGGTTAAATGGCCAGCACTGGTATCT
TCAAGAGTCTTGGATGTTATCCAGTTTGCTTCTCTCCCTGATGAGCTGTT
ACAGAAGTACCAGAGTATTGAAGAACTCCAGAGTGTTCCAACCACCTTGA
AATTTTANGCCAACTATGTATCAACGAACTATTTGCGAACCAAAACATCA
GCAAGGTGGATTTGGAAATTTCTTTGAGCTGTTTATCAATTGTTGGTCTG
TTGGTTGAAAGTGCTGAGAATGCATCAATCACTGATCTGGAAATTGGACT
ACAAATCGGCTTATN
Run BLAST on NCBI

transcript from alignment at scaffold_448:696447..699481-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066000 ID=TCONS_00066000|Name=TCONS_00066000|organism=Clytia hemisphaerica|type=transcript|length=3035bp|location=Sequence derived from alignment at scaffold_448:696447..699481- (Clytia hemisphaerica)
CAAGATGTAGATCAAAATAGTACTGCTGATCAAAAGTTATTCTTCATGGT
TTTATCTCAAGTTTTCACATCAATCACAAGTAAAAAATTAAATGCAGTTT
TTGAATTTTTCAACAACAAAGAGTATAACATCGACAATCACATCTTGAAA
GCAATCAAAACCACACTTTCATCCCATGGTGGTGTCAAAGTCAAAGATGA
AGCCAAGCTACTACAGCTTAATCGAACCTTGATGATGAACGTTGCAGAAA
GTTATGATTTGGATTCATTCAAAATTCTTTGGCAGTTCCAGTCCTCTCTA
CATTCTGATCACATTCTGAAATTTATCTCAAATCTGATCTTATTGATCAA
CACTTTATCTGGCAAATTTGGAGTAAATGAAGCTGCTTGTTTTGGACTGT
CGAGAGATGTTGTTGCTTCTCTTGATGTCGATAACTTTTTAGAGAATGAC
CCAGTTCCATTCATGTTGGAAATGTTTGTAGATGGTATCAAACGAAATCG
AAAGTTTGATGTTTCATTGACCAGTCTTTGTAATGCATTCTTTGTGAAGG
TCTTGATCCAGAAAATTTCAGGTCAGTCAACTTTCTCGTCTTTTTGATTG
CCCTAAAATTATAAGGTTGCGTTCAAGTGATGTCTCTCAATTATTATTTT
TTATGTCTGATAGTTTTGCCTCTTAACGTCTTAACAAAATACTGAAGCAG
ATGCTATCAAATTAGATTTAATAATTCCTTTTTCTCAACAAACTGGCCTT
GTACATTGGTTTAAAGCTCCAAGTAATTTTAGTAGGATCTGTCTCATCTT
AACGAAAGACTGTTTTAAAAAGGTTTCTTATTTTACAGAAAACAAAGATG
AATTTGATGAAGTTAAACAGAACATCTTCAAGACCATTGTCCCTTTTGCT
ACCAATAAAAAGTCAAATGCTTTAAGCAACACTTGTCGTGAACTAACGAA
AACGTTTTTCCAGGTAAGAAGATAGCATCAGGAAAAATTGATGATTTGTA
AAATTCATACCATAGTCATTATAAAAAAGACCCGGTCTGGCAATGTCTTG
TTTTACCTTTTTGTTCAATTTTCTTTTGTTACAAACAAAAGATAAGTTGC
GATTTGCATACTTTTTGATAACGTTACCAAAATCTCCTCTTGGGATTGGT
CTATTTTGTACATTAACTTGTAATCATAGCTATAAAAGTTGATGTTTTTG
CTAAGAATATTTCATACACTTTAAATTTATTTGTTCCATCTTTCAAGACA
TGTTTCCAAGATACAGAACAAGTCCGTCTGTTCACCGGCCAACTATGTAT
CAACGAACTATTTGCGAACCAAAACATCAGCAAGGTGGATTTGGAAATTT
CGTTGAGCTGTTTATCAATTGTTGGTCTGTTGGTTGAAAGTGCTGAGAAT
GCAGCAATCACTGATCTGGGTATGAACGTAATATTGATATTGATCTATTA
AAATTCTGTTATAAAAGAGGATGGTTGTGTTTGAAACTTCCAGAAATTGA
ATAAAGGGTATTGGGAGTTAGCTATAGACGATGAGGACCAGGAATAAAGT
CATATCTATCTGAAGGCATTTGACTTAACAGAAATTTGCCAAAATTTGAC
AAAGTTTTCTTTTTAAATTTTGTAAATTTTGTTTGAAGCGCTAGAAATGC
AGCAAAGACTGTAAAAACGAACTTTTAGACTTACAATACTTTGTTTTTCA
ATTTAAGAAATTGGACTACAAATCGGCTTATTATCCTTCCCAAACAAGAC
AGTACGAGAAGTAGTGTGCGACATAATGGCGAAATATGGTGAAGTATTGA
AGTCAAATCATCCTTGGTCATTCTTCACAAATCTTGTTGTGGAAAATACT
AACGAAATCGTTTTGGATGATACCCATGCTAAAAGGTAAAAGAAATTAAT
TTTCTTTGGCTGTAGAAAAAAATATCAAAAGAGAAGTATCATTAAACAAT
TTTCTTTACCTTTTTTAGCAAAAGACAATCTATTTCAATATTCTGAGTGT
CGGAGTTATAAAAACTTTTGTGTTCATCTTTCTAACGAGTATTTTTATCA
GCCAAATAGTTTGAGTGAAGAAATTCTTCTTGTCCACTTAAAATGAACTA
AAAGATTTAATACCATAACATTTTTATTAGGATGTTTGGCTCTACACTGA
AAGCATCTTCAACTCGGAGAAAAAGTGAATTTGATATGTTCTCTAAGAAG
GATATACCAAAGAAAGAAAAACGAAAGACTGCAGCATCAGAACATTGTAT
CTCTTGTTTGGTTAAATGGCCAGCACTGGTATCTTCAAGAGTCTTGGATG
TTATCCAGTTTGCTTCTCTCCCTGATGTAAGATTCTATTTTTATACCCTA
TTGAAGCCCAAAATACCTTAAAAAACCTCCTGAAAGCCTAGATTTTATTA
ATAATATGCAAAAATAAAACCACTTAAGAAAGAGATTAATGCATTTTCGC
TCATGCGGAACTATAAACTTAAGTTTGCATTAGTATTTGTTATAACTTTT
ATCAAATTTTTGTCTTCCATATAGGAGCTGTTACAGAAGTACCAGAGTAT
TGAAGAACTCCAGAGTGTTCCAACCACCTTGAAATTTTANGCCAACTATG
TATCAACGAACTATTTGCGAACCAAAACATCAGCAAGGTGGATTTGGAAA
TTTCTTTGAGCTGTTTATCAATTGTTGGTCTGTTGGTTGAAAGTGCTGAG
AATGCATCAATCACTGATCTGGGTATGAACGTAATATCGATAGTGATCTA
TTAAAATTCTGTTATAAAAGAGGATGGTTGTGTTTGAAACTTCCAGAAAT
TGAATAAAGGGTATTGGGAGTTAGCTATAGACGATGAGGACCAGGAATAA
AGTCATATCTATCTGAAGGCTTTTGACTTAACAGAAATTTGCCAAAATTT
GACAAAATTTTCTTTTTAAATTTTGTAAATTTTGTTTGAAGAGCTAGAAA
TGCAGCAAAGACTGTAAAAACGAACTTTTAGACTTACAATACTTTGTTTT
TCAATTTAAGAAATTGGACTACAAATCGGCTTATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041329XLOC_041329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066000-exon-scaffold_448-1575043694:698911..699481TCONS_00066000-exon-scaffold_448-1575043694:698911..699481Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1575043694:698519..698643TCONS_00066000-exon-scaffold_448-1575043694:698519..698643Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1575043694:698063..698234TCONS_00066000-exon-scaffold_448-1575043694:698063..698234Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1575043694:697597..697774TCONS_00066000-exon-scaffold_448-1575043694:697597..697774Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1575043694:697156..697351TCONS_00066000-exon-scaffold_448-1575043694:697156..697351Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1575043694:696760..696957TCONS_00066000-exon-scaffold_448-1575043694:696760..696957Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1575043694:696447..696471TCONS_00066000-exon-scaffold_448-1575043694:696447..696471Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1510915933:698911..699481TCONS_00066000-exon-scaffold_448-1510915933:698911..699481Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1510915933:698519..698643TCONS_00066000-exon-scaffold_448-1510915933:698519..698643Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1510915933:698063..698234TCONS_00066000-exon-scaffold_448-1510915933:698063..698234Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1510915933:697597..697774TCONS_00066000-exon-scaffold_448-1510915933:697597..697774Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1510915933:697156..697351TCONS_00066000-exon-scaffold_448-1510915933:697156..697351Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1510915933:696760..696957TCONS_00066000-exon-scaffold_448-1510915933:696760..696957Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1510915933:696447..696471TCONS_00066000-exon-scaffold_448-1510915933:696447..696471Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1491911889:698911..699481TCONS_00066000-exon-scaffold_448-1491911889:698911..699481Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1491911889:698519..698643TCONS_00066000-exon-scaffold_448-1491911889:698519..698643Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1491911889:698063..698234TCONS_00066000-exon-scaffold_448-1491911889:698063..698234Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1491911889:697597..697774TCONS_00066000-exon-scaffold_448-1491911889:697597..697774Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1491911889:697156..697351TCONS_00066000-exon-scaffold_448-1491911889:697156..697351Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1491911889:696760..696957TCONS_00066000-exon-scaffold_448-1491911889:696760..696957Clytia hemisphaericaexon
TCONS_00066000-exon-scaffold_448-1491911889:696447..696471TCONS_00066000-exon-scaffold_448-1491911889:696447..696471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:696447..699481 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01431	1.76141	1.10093	0.549289	12.6576	7.10058	8.06159	9.07524	2.00715	3.89293	1.05129	1.33273	3.5211	8.53938	2.27298	5.71404	3.93504	4.16369	1.29578	0.915881	5.84116	3.16799	5.40995	5.0481	5.71739	6.14789	2.11657	2.23593	7.78719	5.01575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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