TCONS_00066001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066001
Unique NameTCONS_00066001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066001 ID=TCONS_00066001|Name=TCONS_00066001|organism=Clytia hemisphaerica|type=transcript|length=895bp
TACAAGATGTAGATCAAAATAGTACTGCTGATCAAAAGTTATTCTTCATG
GTTTTATCTCAAGTTTTCACATCAATCACAAGTAAAAAATTAAAtgcagt
ttttgaatttttcaacaacaaaGAGTATAACATCGACAATCACATCTTGA
AAGCAATCAAAACCACACTTTCATCCCATGGTGGTGTCAAAGTCAAAGAT
GAAGCCAAGCTACTACAGCTTAATCGAACCTTGATGATGAACGTTGCAGA
AAGTTATGATTTGGATTCATTCAAAATTCTTTGGCAGTTCCAGTCCTCTC
TACATTCTGATCACATTCTGAAATTTATCTCAAATCTGATCTTATTGATC
AACACTTTATCTGGCAAATTTGGAGTAAATGAAGCTGCTTGTTTTGGACT
GTCGAGAGATGTTGTTGCTTCTCTTGATGTCGATAACTTTTTAGAGAATG
ACCCAGTTCCATTCATGTTGGAAATGTTTGTAGATGGTATCAAACGAAAT
CGAAAGTTTGATGTTTCATTGACCAGTCTTTGTAATGCATTCTTTGTGAA
GGTCTTGATCCAGAAAATTTCAGAAAACAAAGATGAATTTGATGAAGTTA
AACAGAACATCTTCAAGACCATTGTCCCTTTTGCTACCAATAAAAAGTCA
AATGCTTTAAGCAACACTTGTCGTGAACTAACGAAAACGTTTTTCCAGAC
ATGTTTCCAAGATACAGAACAAGTCCGTCTGTTCACCGGCCAACTATGTA
TCAACGAACTATTTGCGAACCAAAACATCAGCAAGGTGGATTTGGAAATT
TCGTTGAGCTGTTTATCAATTGTTGGTCTGTTGGTTGAAAGTGCTGAGAA
TGCAGCAATCACTGATCTGGAAATTGGACTACAAATCGGCTTATN
Run BLAST on NCBI

transcript from alignment at scaffold_448:696447..699483-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066001 ID=TCONS_00066001|Name=TCONS_00066001|organism=Clytia hemisphaerica|type=transcript|length=3037bp|location=Sequence derived from alignment at scaffold_448:696447..699483- (Clytia hemisphaerica)
TACAAGATGTAGATCAAAATAGTACTGCTGATCAAAAGTTATTCTTCATG
GTTTTATCTCAAGTTTTCACATCAATCACAAGTAAAAAATTAAATGCAGT
TTTTGAATTTTTCAACAACAAAGAGTATAACATCGACAATCACATCTTGA
AAGCAATCAAAACCACACTTTCATCCCATGGTGGTGTCAAAGTCAAAGAT
GAAGCCAAGCTACTACAGCTTAATCGAACCTTGATGATGAACGTTGCAGA
AAGTTATGATTTGGATTCATTCAAAATTCTTTGGCAGTTCCAGTCCTCTC
TACATTCTGATCACATTCTGAAATTTATCTCAAATCTGATCTTATTGATC
AACACTTTATCTGGCAAATTTGGAGTAAATGAAGCTGCTTGTTTTGGACT
GTCGAGAGATGTTGTTGCTTCTCTTGATGTCGATAACTTTTTAGAGAATG
ACCCAGTTCCATTCATGTTGGAAATGTTTGTAGATGGTATCAAACGAAAT
CGAAAGTTTGATGTTTCATTGACCAGTCTTTGTAATGCATTCTTTGTGAA
GGTCTTGATCCAGAAAATTTCAGGTCAGTCAACTTTCTCGTCTTTTTGAT
TGCCCTAAAATTATAAGGTTGCGTTCAAGTGATGTCTCTCAATTATTATT
TTTTATGTCTGATAGTTTTGCCTCTTAACGTCTTAACAAAATACTGAAGC
AGATGCTATCAAATTAGATTTAATAATTCCTTTTTCTCAACAAACTGGCC
TTGTACATTGGTTTAAAGCTCCAAGTAATTTTAGTAGGATCTGTCTCATC
TTAACGAAAGACTGTTTTAAAAAGGTTTCTTATTTTACAGAAAACAAAGA
TGAATTTGATGAAGTTAAACAGAACATCTTCAAGACCATTGTCCCTTTTG
CTACCAATAAAAAGTCAAATGCTTTAAGCAACACTTGTCGTGAACTAACG
AAAACGTTTTTCCAGGTAAGAAGATAGCATCAGGAAAAATTGATGATTTG
TAAAATTCATACCATAGTCATTATAAAAAAGACCCGGTCTGGCAATGTCT
TGTTTTACCTTTTTGTTCAATTTTCTTTTGTTACAAACAAAAGATAAGTT
GCGATTTGCATACTTTTTGATAACGTTACCAAAATCTCCTCTTGGGATTG
GTCTATTTTGTACATTAACTTGTAATCATAGCTATAAAAGTTGATGTTTT
TGCTAAGAATATTTCATACACTTTAAATTTATTTGTTCCATCTTTCAAGA
CATGTTTCCAAGATACAGAACAAGTCCGTCTGTTCACCGGCCAACTATGT
ATCAACGAACTATTTGCGAACCAAAACATCAGCAAGGTGGATTTGGAAAT
TTCGTTGAGCTGTTTATCAATTGTTGGTCTGTTGGTTGAAAGTGCTGAGA
ATGCAGCAATCACTGATCTGGGTATGAACGTAATATTGATATTGATCTAT
TAAAATTCTGTTATAAAAGAGGATGGTTGTGTTTGAAACTTCCAGAAATT
GAATAAAGGGTATTGGGAGTTAGCTATAGACGATGAGGACCAGGAATAAA
GTCATATCTATCTGAAGGCATTTGACTTAACAGAAATTTGCCAAAATTTG
ACAAAGTTTTCTTTTTAAATTTTGTAAATTTTGTTTGAAGCGCTAGAAAT
GCAGCAAAGACTGTAAAAACGAACTTTTAGACTTACAATACTTTGTTTTT
CAATTTAAGAAATTGGACTACAAATCGGCTTATTATCCTTCCCAAACAAG
ACAGTACGAGAAGTAGTGTGCGACATAATGGCGAAATATGGTGAAGTATT
GAAGTCAAATCATCCTTGGTCATTCTTCACAAATCTTGTTGTGGAAAATA
CTAACGAAATCGTTTTGGATGATACCCATGCTAAAAGGTAAAAGAAATTA
ATTTTCTTTGGCTGTAGAAAAAAATATCAAAAGAGAAGTATCATTAAACA
ATTTTCTTTACCTTTTTTAGCAAAAGACAATCTATTTCAATATTCTGAGT
GTCGGAGTTATAAAAACTTTTGTGTTCATCTTTCTAACGAGTATTTTTAT
CAGCCAAATAGTTTGAGTGAAGAAATTCTTCTTGTCCACTTAAAATGAAC
TAAAAGATTTAATACCATAACATTTTTATTAGGATGTTTGGCTCTACACT
GAAAGCATCTTCAACTCGGAGAAAAAGTGAATTTGATATGTTCTCTAAGA
AGGATATACCAAAGAAAGAAAAACGAAAGACTGCAGCATCAGAACATTGT
ATCTCTTGTTTGGTTAAATGGCCAGCACTGGTATCTTCAAGAGTCTTGGA
TGTTATCCAGTTTGCTTCTCTCCCTGATGTAAGATTCTATTTTTATACCC
TATTGAAGCCCAAAATACCTTAAAAAACCTCCTGAAAGCCTAGATTTTAT
TAATAATATGCAAAAATAAAACCACTTAAGAAAGAGATTAATGCATTTTC
GCTCATGCGGAACTATAAACTTAAGTTTGCATTAGTATTTGTTATAACTT
TTATCAAATTTTTGTCTTCCATATAGGAGCTGTTACAGAAGTACCAGAGT
ATTGAAGAACTCCAGAGTGTTCCAACCACCTTGAAATTTTANGCCAACTA
TGTATCAACGAACTATTTGCGAACCAAAACATCAGCAAGGTGGATTTGGA
AATTTCTTTGAGCTGTTTATCAATTGTTGGTCTGTTGGTTGAAAGTGCTG
AGAATGCATCAATCACTGATCTGGGTATGAACGTAATATCGATAGTGATC
TATTAAAATTCTGTTATAAAAGAGGATGGTTGTGTTTGAAACTTCCAGAA
ATTGAATAAAGGGTATTGGGAGTTAGCTATAGACGATGAGGACCAGGAAT
AAAGTCATATCTATCTGAAGGCTTTTGACTTAACAGAAATTTGCCAAAAT
TTGACAAAATTTTCTTTTTAAATTTTGTAAATTTTGTTTGAAGAGCTAGA
AATGCAGCAAAGACTGTAAAAACGAACTTTTAGACTTACAATACTTTGTT
TTTCAATTTAAGAAATTGGACTACAAATCGGCTTATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041329XLOC_041329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066001-exon-scaffold_448-1575043694:698911..699483TCONS_00066001-exon-scaffold_448-1575043694:698911..699483Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1575043694:698519..698643TCONS_00066001-exon-scaffold_448-1575043694:698519..698643Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1575043694:698063..698234TCONS_00066001-exon-scaffold_448-1575043694:698063..698234Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1575043694:696447..696471TCONS_00066001-exon-scaffold_448-1575043694:696447..696471Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1510915933:698911..699483TCONS_00066001-exon-scaffold_448-1510915933:698911..699483Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1510915933:698519..698643TCONS_00066001-exon-scaffold_448-1510915933:698519..698643Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1510915933:698063..698234TCONS_00066001-exon-scaffold_448-1510915933:698063..698234Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1510915933:696447..696471TCONS_00066001-exon-scaffold_448-1510915933:696447..696471Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1491911889:698911..699483TCONS_00066001-exon-scaffold_448-1491911889:698911..699483Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1491911889:698519..698643TCONS_00066001-exon-scaffold_448-1491911889:698519..698643Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1491911889:698063..698234TCONS_00066001-exon-scaffold_448-1491911889:698063..698234Clytia hemisphaericaexon
TCONS_00066001-exon-scaffold_448-1491911889:696447..696471TCONS_00066001-exon-scaffold_448-1491911889:696447..696471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:696447..699483 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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