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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066004 ID=TCONS_00066004|Name=TCONS_00066004|organism=Clytia hemisphaerica|type=transcript|length=3443bp
ATTTaacttctttttatttttgattaacGTTGCTGTGTTGGAAAAGTAGC
AAGAACTTCAGGGTGTCGTTTTTCCCGTAGGCAAGGTGCTCAAGTTTAAG
ACCATTCATCTGCATGTTGTTGTCTTTTGTCCATCtgtaagaaaatgtta
aaacccCTGTTTTGATATCTATGagaaattccgaaaattttcttccattc
cTTGGAATCCAACTACTCGGAAAAAGACTAAGACCCCTGGACTCCCTGGA
AATGTTAATCCACAATTACATGGGACTGATATAAGATGGAAGTGTCTATT
GTCCATTGCACCATCAAACTTTTTTGGTAGGCGACTGTTTCAGTACCAAA
TCATCCAATGTGTGTTAATTAAAACATGACATGACATAAAACATTAGATG
TAAGAGAAAAACGTGCACCCAAAAGATTATAATTTGGGTATCTGGAACAC
TAATATAAATAGTCATGAGTTTTTTGTTTGCcaataaaaataagactttt
cgTCCAAGGAGAAGTATCCCAGAAGGAACACATCAATATGATTTATTAAA
ACATGCTGAAGCTACTCTTGGATCAGGAAATCTTCGAAATGCTGTGATGC
TACCTGAAGGCGAAGATCTAAATGAATGGGTTGCTGTCAATACCGTTGAC
TTCTTCAATCAAATTAATATGTTATATGGAACCATAACAGAAGAATGCAC
CCCTGAAAGTTGTCCAGTCATGTCTGCTGGACCGAAATTTGAATACCTTT
GGGCTGATGGTACCTCTATTAAGAAGCCTGTAAAATGTTCTGCACCACAA
TATATTGATTACCTAATGCAATGGGTTCAGGATCAGCTTGATGATGAGAC
CTTATTTCCATCCAAGATTGGAGTACCATTCCCCAAGAATTTTTTGAGTA
TCGCTAAAACCATGTTAAAACGTCTGTTCCGTGTTTATGCTCATATCTAC
CATCAACATTTCCCGCAAGTCGTCAGCTTGAAAGAAGAAGCTCATTTGAA
TACGTCTTTCAAGCATTTTATCTACTTTGTGCAAGAGTTTAATTTGATTG
AGAAAAGAGAGCTGGCTCCTTTGCAAGAATTGATCGATAGGCTAATTAAC
AAAGCCTCTGCATAAATTCCTCTTGATTTCACCTCCATTTTTTACTGGAA
GCTACACAATTTGTTATGAGTGATTATACCAAATGGGAATCAAATTTTAT
TNTACTGGAAGCCACACAATTTGTTATGAGTGATTATACGAAATGggaat
caaattttatttttggaatatttttgaatgcaTTCATGATACCGTATAAT
AACTGTAACTTTCCAAGAGCACCTTATACCAACTGGAACTAAGGAACTGG
TTTATTGTTTTGCTTCGTTAAATCGTAAATTTTTACTGGCTAATTACTCT
GTGAAGTAGATAGATGTGTTATACTAAAATTGAGGAAACTGGTTACAGAT
GTTTGTAACCAAATGCCAAATTATTATGTTAATTCTGATggaatttttgc
caaaacctTGATGtgataaaaaatcgaaaaatatttttttatatggtGGC
ATTATAACCCCCAGATGGATGATTgcgtaaaaaaatttttggttcaATTA
CTAAGCTGTAATTATGTTTGGTTGAAAAGCTCGAAGCCAAGTCGTTTTGG
TTTTTTGGTTTGTTGGTTTATGTTCAAATGTTTATATATATAactgaaaa
ataacaattttgttTATAACTGATTTTACAGTAGTTTGTAGTAAGTTTGG
ACAGAATTTTTAGAATGTGCTTAAGAAAATGAATCAAGGCAACACATTTT
TGTTCAACCAAAATANGTAAGTTTGGACAGAATTTTTAAAATGTGCTTAA
GAAAATGAATCAAGGCAACACATTTTTGTTCAACCAAAATAGTACTGTAG
ATTTTGCCAAGGACAAAAATTATGACCAGCTGCGGatttttttaattcac
tttCCAATGGTATGTAATACATCTAAGCCTAATTTTTTGTCAACTATTAT
TAAAATTATACAGAACTATCTTGTGGACGAGTTTAAGATAGATTGGTTAA
GATTTAATTCAGCTTTTCCTATCAATTccagtttttatattttttgtctt
tGGTATTTTATGAAGTACTATAGTTTTCAATTGTGGCAAACTCATTCTAA
AGCACAGTTAAGTCTCGACTTGAATTTAATTGATAGAAAATCCTCTATAA
AAATTCTCTCTAAAGATGTATTTGTTTAACAGTGATTTAACAGGGATAAA
TTaaacacaaaaaataatattcTGGGATTCTACAGTTACTTTACTTGTGA
GATGACTTAATGGGGTCATCACTTGATGTGTacgaaaataaaattctcaa
aaagcatttattgtttttttctttcttctttaatTCTATTGAAGTATGGT
TTAGGAATAAGGTAGGATAAAACTTGGGATTAATTTCAATCTCATGGATT
TTAGAGAGCATATGTTTTTCTCTCATCGATCCActtactttttatatttt
tttgctcGAACATTACGTCACCCCTTAGATTACGTCATATTCCCTTACTA
AACTATGACGTAATAATCAGTGGCTTTCAGTTTGTAAATAGTTAAACGAA
AGTTTATCACCATTCGAAACAATGTTCTTCTGTGGTCCTTAGAATTTTAG
TCTGTATCGCCGCTTTTGAGCCTGAATTaaagccggtctccactttcgtg
caaaatgagcgaaaacttcttgacgtttttgtaaggtctttggtcggttg
aaaaatgaagcaattccattgggcaaatctgacgtaacggtttaaaaaag
ttgaacttctttcaactttttaaggccggtctccactttcgcgcgaaagt
aATCTTATGCAGGCAAAAtcgattgaaaaaaaaggtttcgCTCATTtttg
cgcgaaagtggagaccgacctTTAGCGGGAATTTCCCAACGTGatcctat
tcatgatatgcaccactggagagtcttctgagaacttttaaaattttcca
cccaatacgtcatttaaacaataaaaaacaatgacgtattgggtggaaca
aaaataaaaaagtgaagTCATTGCactggtgcatatcatgaatttgacGT
AATATAATAAGGAACTTCAATACCATTACATAATGTTATCAGCGTTccgt
atgtttttttttttgttttatttgaaaataattaattgATAAATAATTAG
TTTCATAAATAGTTTTTATGAAGTGAACTTATTTTTATGCTAAAACTAaa
tgattttttagaaaaaatacaaattttctttttttttgtttcattttttt
ttcttctttaattaTTCACTACCTATATATTGCACTTTTTCATTCTTTCA
AGcgattttttataacttttttgttgttgtttagtttaatttcattctat
cattgttagctttaaaacttaaaaaatacttttcttcCCTTTA Run BLAST on NCBI transcript from alignment at scaffold_448:761233..765349- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066004 ID=TCONS_00066004|Name=TCONS_00066004|organism=Clytia hemisphaerica|type=transcript|length=4117bp|location=Sequence derived from alignment at scaffold_448:761233..765349- (Clytia hemisphaerica)
ATTTAACTTCTTTTTATTTTTGATTAACGTTGCTGTGTTGGAAAAGTAGC
AAGAACTTCAGGGTGTCGTTTTTCCCGTAGGCAAGGTGCTCAAGTTTAAG
ACCATTCATCTGCATGTTGTTGTCTTTTGTCCATCTGTAAGAAAATGTTA
AAACCCCTGTTTTGATATCTATGAGAAATTCCGAAAATTTTCTTCCATTC
CTTGGAATCCAACTACTCGGAAAAAGACTAAGACCCCTGGACTCCCTGGA
AATGTTAATCCACAATTACATGGGACTGATATAAGATGGAAGTGTCTATT
GTCCATTGCACCATCAAACTTTTTTGGTAGGCGACTGTTTCAGTACCAAA
TCATCCAATGTGTGTTAATTGTAAGCAACCTACGTTTTAAAATTTGTTTT
GGGAAAGTTCCCAGACATCTGCACACAAAATTATGAGCACTTTTCAAGGA
TTAAAGGGTCACAAAAATGAAACTCTTCTTTTAATTCAAGGCAATAATCA
TAAGATGAAATAAACATTAGAGGCGACTTAATATATTTAATAAATTAAAT
ATTCAAAAATTACTACTTTCTGTATTTTAGAAAACATGACATGACATAAA
ACATTAGATGTAAGAGAAAAACGTGCACCCAAAAGATTATAATTTGGGTA
TCTGGAACACTAATATAAATAGTCATGAGTTTTTTGTTTGCCAATAAAAA
TAAGACTTTTCGTCCAAGGAGAAGTATCCCAGAAGGAACACATCAATATG
ATTTATTAAAACATGCTGAAGCTACTCTTGGATCAGGAAATCTTCGAAAT
GCTGTGATGCTACCTGAAGTATGATTTTCTTTGATATTTTAGCATTTTCT
AGTTGAAGAGGTTTACAGCATACAACTCCTATGTCTTTTTTCTCAAAAAT
GACGCTTTCGATAACTTTTGAACACGTGAAGTAAATTTGAAGTATGATAG
CTCAAAATTCAAGTTAGTCTTTCCTCCTTCGAATAGCAAAAAGTTTTGAT
TTATAACATTTTCAGTTTTCTCGAAAATTAACTTCAACTTGTACACATTT
TTGTATCACCCGGTACTTTTTATGGGACTAGTTTTATATAGCAGAATTAA
TTTTTAAAGTGTAAGGGTGTCGCAGTAGTGTTTTTGCAAAACTTATTTTG
ACAATTGAAAATCATTTTCTGTTGAAGCTATTTGCAACTTTTCAGTCGCA
CTTAAATGTAAGCTTGGCTGAAAAAAGATTAGCCTCCCTAAAAAATTTGT
TGTTGCTAATATTTGTCTTTTCATCTTTTCAGGGCGAAGATCTAAATGAA
TGGGTTGCTGTCAATACCGTTGACTTCTTCAATCAAATTAATATGTTATA
TGGAACCATAACAGAAGAATGCACCCCTGAAAGTTGTCCAGTCATGTCTG
CTGGACCGAAATTTGAATACCTTTGGGCTGATGGTACCTCTATTAAGAAG
CCTGTAAAATGTTCTGCACCACAATATATTGATTACCTAATGCAATGGGT
TCAGGATCAGCTTGATGATGAGACCTTATTTCCATCCAAGATTGGAGTAC
CATTCCCCAAGAATTTTTTGAGTATCGCTAAAACCATGTTAAAACGTCTG
TTCCGTGTTTATGCTCATATCTACCATCAACATTTCCCGCAAGTCGTCAG
CTTGAAAGAAGAAGCTCATTTGAATACGTCTTTCAAGCATTTTATCTACT
TTGTGCAAGAGTTTAATTTGATTGAGAAAAGAGAGCTGGCTCCTTTGCAA
GAATTGATCGATAGGCTAATTAACAAAGCCTCTGCATAAATTCCTCTTGA
TTTCACCTCCATTTTTTACTGGAAGCTACACAATTTGTTATGAGTGATTA
TACCAAATGGGAATCAAATTTTATTNTACTGGAAGCCACACAATTTGTTA
TGAGTGATTATACGAAATGGGAATCAAATTTTATTTTTGGAATATTTTTG
AATGCATTCATGATACCGTATAATAACTGTAACTTTCCAAGAGCACCTTA
TACCAACTGGAACTAAGGAACTGGTTTATTGTTTTGCTTCGTTAAATCGT
AAATTTTTACTGGCTAATTACTCTGTGAAGTAGATAGATGTGTTATACTA
AAATTGAGGAAACTGGTTACAGATGTTTGTAACCAAATGCCAAATTATTA
TGTTAATTCTGATGGAATTTTTGCCAAAACCTTGATGTGATAAAAAATCG
AAAAATATTTTTTTATATGGTGGCATTATAACCCCCAGATGGATGATTGC
GTAAAAAAATTTTTGGTTCAATTACTAAGCTGTAATTATGTTTGGTTGAA
AAGCTCGAAGCCAAGTCGTTTTGGTTTTTTGGTTTGTTGGTTTATGTTCA
AATGTTTATATATATAACTGAAAAATAACAATTTTGTTTATAACTGATTT
TACAGTAGTTTGTAGTAAGTTTGGACAGAATTTTTAGAATGTGCTTAAGA
AAATGAATCAAGGCAACACATTTTTGTTCAACCAAAATANGTAAGTTTGG
ACAGAATTTTTAAAATGTGCTTAAGAAAATGAATCAAGGCAACACATTTT
TGTTCAACCAAAATAGTACTGTAGATTTTGCCAAGGACAAAAATTATGAC
CAGCTGCGGATTTTTTTAATTCACTTTCCAATGGTATGTAATACATCTAA
GCCTAATTTTTTGTCAACTATTATTAAAATTATACAGAACTATCTTGTGG
ACGAGTTTAAGATAGATTGGTTAAGATTTAATTCAGCTTTTCCTATCAAT
TCCAGTTTTTATATTTTTTGTCTTTGGTATTTTATGAAGTACTATAGTTT
TCAATTGTGGCAAACTCATTCTAAAGCACAGTTAAGTCTCGACTTGAATT
TAATTGATAGAAAATCCTCTATAAAAATTCTCTCTAAAGATGTATTTGTT
TAACAGTGATTTAACAGGGATAAATTAAACACAAAAAATAATATTCTGGG
ATTCTACAGTTACTTTACTTGTGAGATGACTTAATGGGGTCATCACTTGA
TGTGTACGAAAATAAAATTCTCAAAAAGCATTTATTGTTTTTTTCTTTCT
TCTTTAATTCTATTGAAGTATGGTTTAGGAATAAGGTAGGATAAAACTTG
GGATTAATTTCAATCTCATGGATTTTAGAGAGCATATGTTTTTCTCTCAT
CGATCCACTTACTTTTTATATTTTTTTGCTCGAACATTACGTCACCCCTT
AGATTACGTCATATTCCCTTACTAAACTATGACGTAATAATCAGTGGCTT
TCAGTTTGTAAATAGTTAAACGAAAGTTTATCACCATTCGAAACAATGTT
CTTCTGTGGTCCTTAGAATTTTAGTCTGTATCGCCGCTTTTGAGCCTGAA
TTAAAGCCGGTCTCCACTTTCGTGCAAAATGAGCGAAAACTTCTTGACGT
TTTTGTAAGGTCTTTGGTCGGTTGAAAAATGAAGCAATTCCATTGGGCAA
ATCTGACGTAACGGTTTAAAAAAGTTGAACTTCTTTCAACTTTTTAAGGC
CGGTCTCCACTTTCGCGCGAAAGTAATCTTATGCAGGCAAAATCGATTGA
AAAAAAAGGTTTCGCTCATTTTTGCGCGAAAGTGGAGACCGACCTTTAGC
GGGAATTTCCCAACGTGATCCTATTCATGATATGCACCACTGGAGAGTCT
TCTGAGAACTTTTAAAATTTTCCACCCAATACGTCATTTAAACAATAAAA
AACAATGACGTATTGGGTGGAACAAAAATAAAAAAGTGAAGTCATTGCAC
TGGTGCATATCATGAATTTGACGTAATATAATAAGGAACTTCAATACCAT
TACATAATGTTATCAGCGTTCCGTATGTTTTTTTTTTTGTTTTATTTGAA
AATAATTAATTGATAAATAATTAGTTTCATAAATAGTTTTTATGAAGTGA
ACTTATTTTTATGCTAAAACTAAATGATTTTTTAGAAAAAATACAAATTT
TCTTTTTTTTTGTTTCATTTTTTTTTCTTCTTTAATTATTCACTACCTAT
ATATTGCACTTTTTCATTCTTTCAAGCGATTTTTTATAACTTTTTTGTTG
TTGTTTAGTTTAATTTCATTCTATCATTGTTAGCTTTAAAACTTAAAAAA
TACTTTTCTTCCCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066004-exon-scaffold_448-1575043694:764980..765349 | TCONS_00066004-exon-scaffold_448-1575043694:764980..765349 | Clytia hemisphaerica | exon |
| TCONS_00066004-exon-scaffold_448-1575043694:764532..764769 | TCONS_00066004-exon-scaffold_448-1575043694:764532..764769 | Clytia hemisphaerica | exon |
| TCONS_00066004-exon-scaffold_448-1575043694:761233..764067 | TCONS_00066004-exon-scaffold_448-1575043694:761233..764067 | Clytia hemisphaerica | exon |
| TCONS_00066004-exon-scaffold_448-1510915933:764980..765349 | TCONS_00066004-exon-scaffold_448-1510915933:764980..765349 | Clytia hemisphaerica | exon |
| TCONS_00066004-exon-scaffold_448-1510915933:764532..764769 | TCONS_00066004-exon-scaffold_448-1510915933:764532..764769 | Clytia hemisphaerica | exon |
| TCONS_00066004-exon-scaffold_448-1510915933:761233..764067 | TCONS_00066004-exon-scaffold_448-1510915933:761233..764067 | Clytia hemisphaerica | exon |
| TCONS_00066004-exon-scaffold_448-1491911889:764980..765349 | TCONS_00066004-exon-scaffold_448-1491911889:764980..765349 | Clytia hemisphaerica | exon |
| TCONS_00066004-exon-scaffold_448-1491911889:764532..764769 | TCONS_00066004-exon-scaffold_448-1491911889:764532..764769 | Clytia hemisphaerica | exon |
| TCONS_00066004-exon-scaffold_448-1491911889:761233..764067 | TCONS_00066004-exon-scaffold_448-1491911889:761233..764067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:761233..765349 - |
Blast
BLAST of TCONS_00066004 vs. Swiss-Prot (Human)
Match: MOB1B (MOB kinase activator 1B OS=Homo sapiens GN=MOB1B PE=1 SV=3) HSP 1 Score: 385.571 bits (989), Expect = 6.599e-125 Identity = 178/214 (83.18%), Postives = 203/214 (94.86%), Query Frame = 3
Query: 465 MSFLFANKN-KTFRPRRSIPEGTHQYDLLKHAEATLGSGNLRNAVMLPEGEDLNEWVAVNTVDFFNQINMLYGTITEECTPESCPVMSAGPKFEYLWADGTSIKKPVKCSAPQYIDYLMQWVQDQLDDETLFPSKIGVPFPKNFLSIAKTMLKRLFRVYAHIYHQHFPQVVSLKEEAHLNTSFKHFIYFVQEFNLIEKRELAPLQELIDRLINK 1103
MSFLF +++ KTF+P+++IPEG+HQY+LLKHAEATLGSGNLR AVMLPEGEDLNEWVAVNTVDFFNQINMLYGTIT+ CT ESCPVMSAGPK+EY WADGT+IKKP+KCSAP+YIDYLM WVQDQLDDETLFPSKIGVPFPKNF+S+AKT+LKRLFRVYAHIYHQHF V+ L+EEAHLNTSFKHFI+FVQEFNLI++RELAPLQELI++L +K
Sbjct: 1 MSFLFGSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSGNLRMAVMLPEGEDLNEWVAVNTVDFFNQINMLYGTITDFCTEESCPVMSAGPKYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDPVIQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLTSK 214
The following BLAST results are available for this feature:
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