TCONS_00066016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066016
Unique NameTCONS_00066016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066016 ID=TCONS_00066016|Name=TCONS_00066016|organism=Clytia hemisphaerica|type=transcript|length=1396bp
AAGAAGTGCCCGAGTAAGATGACATATTTTCGTCTCAAGATCTTCAGTTT
ATAAATCTTCATTGTCATCATTTTCATCGATCAAAATATTCCTTTGATGC
TTGTTCCGTCGGCGCCGTAAAAAGAGCACGAAGACAACAACGGCTGTTAC
TATGACGACAATACAAATACCAGAAATTACCCAAACCAAAACAGAGGGTT
GCTCAGAGTCTCTTTTACCATCGCACATCATCTTTGCTCCATTTTCATTT
AAACACATGCAAACATAACTCCGGTAATCAACCGGAACACACACCTGGGA
CTCCGGACATGTATGATTTCCGCATACCTCAGTAACACTCTTCCGTTTCT
CGCAATAACGCCCTTCAAAACCATATTTGCAATAACACtggaaagttttc
ttttccACATTAACAGTACAATCTGCTCCATTCATGCAATCAGCAATATC
ACATAGATTACAACCAACTTGGTTTGGACTGAGGGAAGTAACATCAATTG
CTTTATCAATGAGTTTACTCGGCGATTGACAAATACCTCCTTCAAAAATA
ACATGGTCCTGATGGCTGACTTTTTGAAGAGCAGCTAAGAAGGGACAACT
ACAATGCCATAGATTCACATCAATAGCGACGTAAAGTTCTCCAGAAAATG
CAAAAGATGAAACTTGGAACGTTGAAATCGTATTATACGATAAGTCAATA
TCTACGGTACCGATATTAGACATATTGGCAAATGCATATTCCGAGATCTC
TGAGATGCGATTATGACTGAACTCTATACGTTTCAGACGTTGATTCATGG
AGATGATAAAATCTGGGATGAAGGTTAACTGGTTTCCGTATAAGAAAACT
TCTTCTAAATATGTAAGGTGGTCAAAAAGGCCTGGAACTAGTCTAGTAAC
GATGTTGTTGACAATGGAGATTTGATGCAAGTCTCTGTTGAAATGAAAAG
TATCATCCAGAATACCATGTATGTGATTGTTATCGAGGTGAATTTCTCGT
AAGTGAACCAGGTATTTCAAATCATTCTTGGTCAAACTCACTAGATTATT
ATTCGATAAAAACAAAACGTGCAACCATCCATATCCTTTGAAGTCGTCTC
CATTCAGTGCAGTCAAGCTGTTGTATTCCATATTCAAAACTTTCAATCTT
TTGACGTAACCAAAACGGTTGTCAGGGACGCGTTTAAGTTTGTTGTTATC
CAGCTCCAATTCCATAAGGGCGGTCAAATTCTCAAAAACAcgtaaagaaa
aatatgttaGCTCGTTTCGTCCAAGGTACAAAACTTCCGTTTCGTTTGAC
ATTTGGGATACGATTGTCGTCAGGTTAGCATTGGTCAGCCCTTTATCTTC
ACAATTGACGACTTTAGAAGTGCAAATACATTTCGGGGGACACGGA
Run BLAST on NCBI

protein sequence of TCONS_00066016-protein

>TCONS_00066016-protein ID=TCONS_00066016-protein|Name=TCONS_00066016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
PCPPKCICTSKVVNCEDKGLTNANLTTIVSQMSNETEVLYLGRNELTYFS
LRVFENLTALMELELDNNKLKRVPDNRFGYVKRLKVLNMEYNSLTALNGD
DFKGYGWLHVLFLSNNNLVSLTKNDLKYLVHLREIHLDNNHIHGILDDTF
HFNRDLHQISIVNNIVTRLVPGLFDHLTYLEEVFLYGNQLTFIPDFIISM
NQRLKRIEFSHNRISEISEYAFANMSNIGTVDIDLSYNTISTFQVSSFAF
SGELYVAIDVNLWHCSCPFLAALQKVSHQDHVIFEGGICQSPSKLIDKAI
DVTSLSPNQVGCNLCDIADCMNGADCTVNVEKKTFQCYCKYGFEGRYCEK
RKSVTEVCGNHTCPESQVCVPVDYRSYVCMCLNENGAKMMCDGKRDSEQP
SVLVWVISGICIVVIVTAVVVFVLFLRRRRNKHQRNILIDENDDNEDL
Run BLAST on NCBI

transcript from alignment at scaffold_448:289345..290740

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066016 ID=TCONS_00066016|Name=TCONS_00066016|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at scaffold_448:289345..290740 (Clytia hemisphaerica)
TCCGTGTCCCCCGAAATGTATTTGCACTTCTAAAGTCGTCAATTGTGAAG
ATAAAGGGCTGACCAATGCTAACCTGACGACAATCGTATCCCAAATGTCA
AACGAAACGGAAGTTTTGTACCTTGGACGAAACGAGCtaacatatttttc
tttacgTGTTTTTGAGAATTTGACCGCCCTTATGGAATTGGAGCTGGATA
ACAACAAACTTAAACGCGTCCCTGACAACCGTTTTGGTTACGTCAAAAGA
TTGAAAGTTTTGAATATGGAATACAACAGCTTGACTGCACTGAATGGAGA
CGACTTCAAAGGATATGGATGGTTGCACGTTTTGTTTTTATCGAATAATA
ATCTAGTGAGTTTGACCAAGAATGATTTGAAATACCTGGTTCACTTACGA
GAAATTCACCTCGATAACAATCACATACATGGTATTCTGGATGATACTTT
TCATTTCAACAGAGACTTGCATCAAATCTCCATTGTCAACAACATCGTTA
CTAGACTAGTTCCAGGCCTTTTTGACCACCTTACATATTTAGAAGAAGTT
TTCTTATACGGAAACCAGTTAACCTTCATCCCAGATTTTATCATCTCCAT
GAATCAACGTCTGAAACGTATAGAGTTCAGTCATAATCGCATCTCAGAGA
TCTCGGAATATGCATTTGCCAATATGTCTAATATCGGTACCGTAGATATT
GACTTATCGTATAATACGATTTCAACGTTCCAAGTTTCATCTTTTGCATT
TTCTGGAGAACTTTACGTCGCTATTGATGTGAATCTATGGCATTGTAGTT
GTCCCTTCTTAGCTGCTCTTCAAAAAGTCAGCCATCAGGACCATGTTATT
TTTGAAGGAGGTATTTGTCAATCGCCGAGTAAACTCATTGATAAAGCAAT
TGATGTTACTTCCCTCAGTCCAAACCAAGTTGGTTGTAATCTATGTGATA
TTGCTGATTGCATGAATGGAGCAGATTGTACTGTTAATGTggaaaagaaa
actttccaGTGTTATTGCAAATATGGTTTTGAAGGGCGTTATTGCGAGAA
ACGGAAGAGTGTTACTGAGGTATGCGGAAATCATACATGTCCGGAGTCCC
AGGTGTGTGTTCCGGTTGATTACCGGAGTTATGTTTGCATGTGTTTAAAT
GAAAATGGAGCAAAGATGATGTGCGATGGTAAAAGAGACTCTGAGCAACC
CTCTGTTTTGGTTTGGGTAATTTCTGGTATTTGTATTGTCGTCATAGTAA
CAGCCGTTGTTGTCTTCGTGCTCTTTTTACGGCGCCGACGGAACAAGCAT
CAAAGGAATATTTTGATCGATGAAAATGATGACAATGAAGATTTATAAAC
TGAAGATCTTGAGACGAAAATATGTCATCTTACTCGGGCACTTCTT

Coding sequence (CDS) from alignment at scaffold_448:289345..290740

>TCONS_00066016 ID=TCONS_00066016|Name=TCONS_00066016|organism=Clytia hemisphaerica|type=CDS|length=1347bp|location=Sequence derived from alignment at scaffold_448:289345..290740 (Clytia hemisphaerica)
CCGTGTCCCCCGAAATGTATTTGCACTTCTAAAGTCGTCAATTGTGAAGA
TAAAGGGCTGACCAATGCTAACCTGACGACAATCGTATCCCAAATGTCAA
ACGAAACGGAAGTTTTGTACCTTGGACGAAACGAGCtaacatatttttct
ttacgTGTTTTTGAGAATTTGACCGCCCTTATGGAATTGGAGCTGGATAA
CAACAAACTTAAACGCGTCCCTGACAACCGTTTTGGTTACGTCAAAAGAT
TGAAAGTTTTGAATATGGAATACAACAGCTTGACTGCACTGAATGGAGAC
GACTTCAAAGGATATGGATGGTTGCACGTTTTGTTTTTATCGAATAATAA
TCTAGTGAGTTTGACCAAGAATGATTTGAAATACCTGGTTCACTTACGAG
AAATTCACCTCGATAACAATCACATACATGGTATTCTGGATGATACTTTT
CATTTCAACAGAGACTTGCATCAAATCTCCATTGTCAACAACATCGTTAC
TAGACTAGTTCCAGGCCTTTTTGACCACCTTACATATTTAGAAGAAGTTT
TCTTATACGGAAACCAGTTAACCTTCATCCCAGATTTTATCATCTCCATG
AATCAACGTCTGAAACGTATAGAGTTCAGTCATAATCGCATCTCAGAGAT
CTCGGAATATGCATTTGCCAATATGTCTAATATCGGTACCGTAGATATTG
ACTTATCGTATAATACGATTTCAACGTTCCAAGTTTCATCTTTTGCATTT
TCTGGAGAACTTTACGTCGCTATTGATGTGAATCTATGGCATTGTAGTTG
TCCCTTCTTAGCTGCTCTTCAAAAAGTCAGCCATCAGGACCATGTTATTT
TTGAAGGAGGTATTTGTCAATCGCCGAGTAAACTCATTGATAAAGCAATT
GATGTTACTTCCCTCAGTCCAAACCAAGTTGGTTGTAATCTATGTGATAT
TGCTGATTGCATGAATGGAGCAGATTGTACTGTTAATGTggaaaagaaaa
ctttccaGTGTTATTGCAAATATGGTTTTGAAGGGCGTTATTGCGAGAAA
CGGAAGAGTGTTACTGAGGTATGCGGAAATCATACATGTCCGGAGTCCCA
GGTGTGTGTTCCGGTTGATTACCGGAGTTATGTTTGCATGTGTTTAAATG
AAAATGGAGCAAAGATGATGTGCGATGGTAAAAGAGACTCTGAGCAACCC
TCTGTTTTGGTTTGGGTAATTTCTGGTATTTGTATTGTCGTCATAGTAAC
AGCCGTTGTTGTCTTCGTGCTCTTTTTACGGCGCCGACGGAACAAGCATC
AAAGGAATATTTTGATCGATGAAAATGATGACAATGAAGATTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041339XLOC_041339Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066016-proteinTCONS_00066016-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066016-exon-scaffold_448-1491911889:289345..290740TCONS_00066016-exon-scaffold_448-1491911889:289345..290740Clytia hemisphaericaexon
TCONS_00066016-exon-scaffold_448-1510915933:289345..290740TCONS_00066016-exon-scaffold_448-1510915933:289345..290740Clytia hemisphaericaexon
TCONS_00066016-exon-scaffold_448-1575043694:289345..290740TCONS_00066016-exon-scaffold_448-1575043694:289345..290740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:289345..290740 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119554	0.14573	0.0676828	0	0.0806128	0	0	0	0	0	0	0.159245	6.02302	4.70671	0.10183	0.0546398	0.089749	0.229975	6.70394	10.8719	0.173388	0.169145	0.0342697	0.0623122	0	0	0	0	0	0.033799
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00066016 vs. Swiss-Prot (Human)
Match: ALS (Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.046e-18
Identity = 84/293 (28.67%), Postives = 136/293 (46.42%), Query Frame = -2 
Query:  436 EVLYLGRNELTYFSLRVFENLTALMELELDNNKLKRVPDNRFGYVKRLKVLNMEYNSLTALNGDDFKGYGWXXXXXXXXXXXXXLTKNDLKYLVHLREIHLDNNHIHGILDDTFHFNRDLHQISIVNNIVTRLVPGLFDHLTYLEEVFLYGNQLTFIPDFIISMNQRLKRIEFSHNRISEISEYAFANMSNIGTVDIDLSYNTISTFQVSSFAFSGELYVAIDVNLWHCSCPFLAALQKVSHQD--------HVIFEGGICQSPSKLIDKAIDVTSLSPNQ-VGCNLCDIADC 1287
            E L LG N +   + R FE L  L  L LD+N+L+ V    F  +  + V+N+  N L  L    F+G G LH L L  + L  +  +    L  LR + L +N + GI + +     +L ++ + +N +T L   LF  L  LE + L  N+L  +P   +   QR   ++ SHNR+  +     A +  +    + L  N++ TF        G   + ++ N W C CP L AL+  + Q+          I EG  CQ P+   +   ++T  SP + VG +L D+++ 
Sbjct:  317 EELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRY--LSLRNNSLRTFTPQP---PGLERLWLEGNPWDCGCP-LKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYN---NITCASPPEVVGLDLRDLSEA 600
The following BLAST results are available for this feature:
BLAST of TCONS_00066016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALS4.046e-1828.67Insulin-like growth factor-binding protein complex... [more]
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