TCONS_00066027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066027
Unique NameTCONS_00066027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1088

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066027 ID=TCONS_00066027|Name=TCONS_00066027|organism=Clytia hemisphaerica|type=transcript|length=1088bp
CTGAGAATCatttaaaatagaaatattttgaaaacgaggtaagcttTGCT
CGCGACATAATTTATTAAAAGGTCTATCCAGAGTATAGTCGAACTGTACG
ACTGTACATCGTGTCATTTAATTCCTTTCTTTGTCAATAGAATATGATTC
TCAACTTTCAACAAACCAATCAGAGAGCAGTATTTTCATAttctaaccaa
tcaaaatttagttcATAGATTTTCTAACCAATCAGAGAAgatcattttta
aatttctaaccAATCAGAGAATGGTACAACaaggtttcttttctttttca
tcttccaTCGCTTCAATTGTTATTTGACGTTCGAATTTTGCACGTTTATC
GCTCACATTATTATTCTTAAGAATCTCTTTTACACCATGTTCGAAAAGTT
CTTTAACGTTATACCCATTTTTTGCTGATGTTGAAAATTGTGCTGGTTGT
TCGGGTAGCTCTGTGAAAAATTCTAACCCAGTCTCTATATTTTGATGAAT
GTCTGACCCATGCTTGTCATATTTTGTCCCCACAACAATAAAAGCCACTT
TTTTATCGTTTAATGTCTTTCGAGCTGAATCGTAATACCATTTCATCGAA
TCAATTGATTTTTGATTCCCGATTTCGTAAACAAGCATAAGGACATCAGA
TCTCGCGATATAAAGATCGTCCATTGTTGGGAATTGTCGGGATCCGGCGA
TATCAATAATTGTAACATTGACTCGTTGATTCATGCAAATAATCGTTTTC
ATAAAGAAATCTTCCACAGTCGCTTGATAATTCTCGGGAAAATCGTTATT
CACCCACCGACGAATAAGTGCCGACTTTCCGATATCGACATCACCGAGTA
GTAACATACCGACCGTATCTTTTCGTTTTAACGATTTTAAAGCTGTTTTC
CGACGACTATCCATGGTATCTGATAGAATAGCTATTTGTCTGAGCCAGTG
AATTATTTCTCCAAGTTTTTAGATTcaaagattatttgaaaattgcTTTT
CCAAGCTCCTGAATCGAACGTCGTAACAAGTTAAACAAAGTTAGTTGCAC
CTTCAGCCAAATTTACaattaaagccaattttatcCGG
Run BLAST on NCBI

protein sequence of TCONS_00066027-protein

>TCONS_00066027-protein ID=TCONS_00066027-protein|Name=TCONS_00066027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MDSRRKTALKSLKRKDTVGMLLLGDVDIGKSALIRRWVNNDFPENYQATV
EDFFMKTIICMNQRVNVTIIDIAGSRQFPTMDDLYIARSDVLMLVYEIGN
QKSIDSMKWYYDSARKTLNDKKVAFIVVGTKYDKHGSDIHQNIETGLEFF
TELPEQPAQFSTSAKNGYNVKELFEHGVKEILKNNNVSDKRAKFERQITI
EAMEDEKEKKPCCTIL
Run BLAST on NCBI

transcript from alignment at scaffold_448:795976..797063

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066027 ID=TCONS_00066027|Name=TCONS_00066027|organism=Clytia hemisphaerica|type=transcript|length=1088bp|location=Sequence derived from alignment at scaffold_448:795976..797063 (Clytia hemisphaerica)
CCGgataaaattggctttaattGTAAATTTGGCTGAAGGTGCAACTAACT
TTGTTTAACTTGTTACGACGTTCGATTCAGGAGCTTGGAAAAgcaatttt
caaataatctttgAATCTAAAAACTTGGAGAAATAATTCACTGGCTCAGA
CAAATAGCTATTCTATCAGATACCATGGATAGTCGTCGGAAAACAGCTTT
AAAATCGTTAAAACGAAAAGATACGGTCGGTATGTTACTACTCGGTGATG
TCGATATCGGAAAGTCGGCACTTATTCGTCGGTGGGTGAATAACGATTTT
CCCGAGAATTATCAAGCGACTGTGGAAGATTTCTTTATGAAAACGATTAT
TTGCATGAATCAACGAGTCAATGTTACAATTATTGATATCGCCGGATCCC
GACAATTCCCAACAATGGACGATCTTTATATCGCGAGATCTGATGTCCTT
ATGCTTGTTTACGAAATCGGGAATCAAAAATCAATTGATTCGATGAAATG
GTATTACGATTCAGCTCGAAAGACATTAAACGATAAAAAAGTGGCTTTTA
TTGTTGTGGGGACAAAATATGACAAGCATGGGTCAGACATTCATCAAAAT
ATAGAGACTGGGTTAGAATTTTTCACAGAGCTACCCGAACAACCAGCACA
ATTTTCAACATCAGCAAAAAATGGGTATAACGTTAAAGAACTTTTCGAAC
ATGGTGTAAAAGAGATTCTTAAGAATAATAATGTGAGCGATAAACGTGCA
AAATTCGAACGTCAAATAACAATTGAAGCGAtggaagatgaaaaagaaaa
gaaaccttGTTGTACCATTCTCTGATTggttagaaatttaaaaatgatcT
TCTCTGATTGGTTAGAAAATCTATgaactaaattttgattggttagaaTA
TGAAAATACTGCTCTCTGATTGGTTTGTTGAAAGTTGAGAATCATATTCT
ATTGACAAAGAAAGGAATTAAATGACACGATGTACAGTCGTACAGTTCGA
CTATACTCTGGATAGACCTTTTAATAAATTATGTCGCGAGCAaagcttac
ctcgttttcaaaatatttctattttaaatGATTCTCAG

Coding sequence (CDS) from alignment at scaffold_448:795976..797063

>TCONS_00066027 ID=TCONS_00066027|Name=TCONS_00066027|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_448:795976..797063 (Clytia hemisphaerica)
ATGGATAGTCGTCGGAAAACAGCTTTAAAATCGTTAAAACGAAAAGATAC
GGTCGGTATGTTACTACTCGGTGATGTCGATATCGGAAAGTCGGCACTTA
TTCGTCGGTGGGTGAATAACGATTTTCCCGAGAATTATCAAGCGACTGTG
GAAGATTTCTTTATGAAAACGATTATTTGCATGAATCAACGAGTCAATGT
TACAATTATTGATATCGCCGGATCCCGACAATTCCCAACAATGGACGATC
TTTATATCGCGAGATCTGATGTCCTTATGCTTGTTTACGAAATCGGGAAT
CAAAAATCAATTGATTCGATGAAATGGTATTACGATTCAGCTCGAAAGAC
ATTAAACGATAAAAAAGTGGCTTTTATTGTTGTGGGGACAAAATATGACA
AGCATGGGTCAGACATTCATCAAAATATAGAGACTGGGTTAGAATTTTTC
ACAGAGCTACCCGAACAACCAGCACAATTTTCAACATCAGCAAAAAATGG
GTATAACGTTAAAGAACTTTTCGAACATGGTGTAAAAGAGATTCTTAAGA
ATAATAATGTGAGCGATAAACGTGCAAAATTCGAACGTCAAATAACAATT
GAAGCGAtggaagatgaaaaagaaaagaaaccttGTTGTACCATTCTCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041349XLOC_041349Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066027-proteinTCONS_00066027-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066027-exon-scaffold_448-1491911889:795976..797063TCONS_00066027-exon-scaffold_448-1491911889:795976..797063Clytia hemisphaericaexon
TCONS_00066027-exon-scaffold_448-1510915933:795976..797063TCONS_00066027-exon-scaffold_448-1510915933:795976..797063Clytia hemisphaericaexon
TCONS_00066027-exon-scaffold_448-1575043694:795976..797063TCONS_00066027-exon-scaffold_448-1575043694:795976..797063Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:795976..797063 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0427793	0	0	8.02763	5.32313	18.5089	16.6613	9.00791	8.60506	6.48813	4.90205	2.04961	1.16872	0.295216	0.153019	0.00396205	0.598444	4.22858	3.08032	1.05765	0.402776	0.976842	1.62728	1.17821	0.795311	0	0.0667029	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00066027 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.024e-19
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = -1 
Query:  390 LLGDVDIGKSALIRRWVNNDFPENYQATVEDFFMKTIICMNQRVNVTIIDIAGSRQFPTMDDLYIARSDVLMLVYEIGNQKSIDSMKWYYDSARKTLND-KKVAFIVVGTKYDKHGSDIHQNIETGLEFFTELPEQPAQFSTSAKNGYNVKELFE 851
            + G   +GKS+L+ R+V   F E+Y  TVED + + I C      + I D  GS QFP M  L I++    +LVY I +++S++ +K  Y+   +   D + +  ++VG K D+  S   Q+ E      T    + A   TSAK  +NVKELF+
Sbjct:   12 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART---WKCAFMETSAKLNHNVKELFQ 163
The following BLAST results are available for this feature:
BLAST of TCONS_00066027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIRA23.024e-1934.19GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIR... [more]
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