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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066100 ID=TCONS_00066100|Name=TCONS_00066100|organism=Clytia hemisphaerica|type=transcript|length=1265bp
TATAATGTACATACAACATTCATATTACGTTAGGTGAACGTTGTAACTAC
TTCTTTATTAACTGAGAGCTCTCGCAATGTATTTTGAGCGATAGATCTGT
gtacatttcaaattttaaaccgCGACCTTTCAATAAAATGTCTTCTGTGA
TCAGCACACAGCAACTTTTAAGGAAGTCCCAGGGGAAGAAAGCAACACCC
TAAGAAATACCGATAAAGAAAAACCCTCAGATTCACTAACGACCATGCCA
AGGACACCAGAAACAGCACCAAGTGACTCCAAAATGACTGTTCAACTAAG
CCAACAGTTGGCCGTTGAGCGTAAACGTAACGATGAGCTCTGTCTCAGGA
TTGAACAGTTACAAATTACTTTAGAAAGTGCTGATATTAATTACGAGATA
CTCAAACAAAAATTCATGGAACAATTTCAAACATTCCAAGACgaattgaa
tattttgaaacgcAACTATCATAAACATACTGAAAGTGGACCCAACTCAC
CGTCCTTGGGTCGACGCCGCCGTGCCATAAACACGGTTTCGGAACaacaa
aatgaattaaaaatacTGACCAATACAGTGGAAGAAAATACCAGAAACAT
TGATGATATTGACTTACGATTACAGATACATGAAAACACTAGATATAACG
GTCGCATATTATGGAAGATTGACGACTTTCATTCCAGAAGACAACAAGTC
TTATCAGGTGAACTCCACGCTTTACATAGTGCGCCTTGTTATTCAAGTGA
TTATGGATACAAATTTTGTTTACGTGCTTACCTCAATGGCGATGGAGTTG
GAGAAGGAACACACGTGTCCCTTTTCCTTGTCGTCATGAAGTCCGACCAT
GATCGAGTCTTAGAATGGCCTTTCCAAAAGAAAGTGAAGATGACACTAAT
CAATCAACAAAATCGGCGTCGTGATCATACAGAAGTCATGACACCGAATA
AAGACTCAGCTAGTTTTCAACGGCCAAAAAATGACACCAATGTTGCGTCT
GGTTGTCCGCTTTTTATGGCGCTCGATCGCTTAGATGCAGAAGGGTTTGT
CAAAGAAGATGTATTATTTTTTGATGTTACCGTTGAGTGACTTCCTATTT
TTGTATACCTTTCTTCATTTTGTAAAAcctttgctttttatttttatgaa
aaacattCTTTTGTATAAAATGTTATATATAAACCATTGTTATTTTATGT
TATATTTACCAACAAACAGCTTTctttaaaatactaaaaaaatagttttg
taTCGGAAAAATAAA Run BLAST on NCBI transcript from alignment at scaffold_450:107137..110580+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066100 ID=TCONS_00066100|Name=TCONS_00066100|organism=Clytia hemisphaerica|type=transcript|length=3444bp|location=Sequence derived from alignment at scaffold_450:107137..110580+ (Clytia hemisphaerica)
TATAATGTACATACAACATTCATATTACGTTAGGTGAACGTTGTAACTAC
TTCTTTATTAACTGAGAGCTCTCGCAATGTATTTTGAGCGATAGATCTGT
gtacatttcaaattttaaaccgCGACCTTTCAATAAAATGTCTTCTGTGA
TCAGCACACAGCAACTTTTAAGGTAGGCATCGTTTGCTTTTATAATTCTT
GTGTATCCTTTATCTTTccattttaaagcattttttattATACAAATTGA
ATTAGTCAGTTATATAATCAAAAcgttatacatcgttggaaagatagtaT
TGAGACTTTCTGAAAGCAATAATACATTTtgattcgaaaaaaaaacaaat
caaaaaagtaaCACCTCTTCTGGAAAGATATCTTTAAAAATGTGAAAGTA
CATATTGATGATATTATGATCATATTTTCTGGGTGACCTAGTGAGAGTAT
CATGCTCTTggcacttttcaaaaattatgaatcCGCTTGGGCGCGACCTA
ATTAATTTCGATTgtcttattattatttttttatctatagttacgtatat
gtaatcacatgacacgagtgcaattcgaatataattgcacgagtgatttt
tttgttattaattttccgagtccgaaaagacgaggaaaattcaaaacaaa
aaaatcacgagtgcaattttcgaattgtacgagttattatgtgattacga
gctaatcgcacaatggctNttattaattttccgagtccgaaaggacgagg
aaaattcaaaacaaaaaaatcacgagtgcaattttcgaattgtacgagtt
attatgtgatcacgagctaatcgcacaatggctttcgctactttttccca
gttaggaaaataaattacagaaattacactgagagttttatatttttctc
ttctctttatgtctttcttttactgttgtttattgattttctttctcgct
aaataaatttcgaatgcaattaaaacgttcgatgcaaaaaaatgtaagaa
aaaaacattaaaatcaattttgtaaacattggctcggcattggagagtgt
gattaacgattaattgctctctttgagggcgtgccaaataagaaaaaata
acccatcgtgcgattatatcTATAATGGATCATTATATCAAATAAACGAA
AAAACCATGTTTACGTAAATCTAAAGGAAAGACCAGCTTCATATTTATTT
ACAGCCAACCTCCTTCAGGGACGGACTTATTTACCATCGGGTTCCTTATA
ACTGTTTCCCCCGctaattgatttttcaaaaattttccacccaggacacc
CGTGGGGGGGGGCATGCTCCCTCTCCAATTTTTATGGTATAACAAAAATC
GCGTGACTGCAAAAATTGAGCTAGGGCCATTATCTTAATCTATTAATTGA
TAGATTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNgccccgacaaagacaaaatcttttcgatcagttgctttttaa
aggtccattctgctgcgcgctggaccaaaaaaaattattgaaaaatatcc
AGAAGCTATCTCATGTCAATTAAGGGATTTATGTTTCTCCGGATGCTCCA
TTATACAGATAAAAAGAATGGTAAAAACATGTTTGGTATCAATTTATTGA
TGCTTGGAAGAAGTAAGCTACTCATGTGCTTTTAGCATTATAGACTATAT
TTAGAGTAAGAAAGTCAAGTGAAAATCTTATCATCTTTTTCAGGTATTTT
TTCGAATTGACTATCCTTACGTAAAGTTATCGGAACCTCGTAAAATGTTT
GTGCACTTGAAGTCATTTAATGATCAATGTAatctttccctttttttcca
GGAAGTCCCAGGGGAAGAAAGCAACACCCTAAGAAATACCGATAAAGAAA
AACCCTCAGATTCACTAACGACCATGCCAAGGACACCAGAAACAGCACCA
AGTGACTCCAAAATGACTGTTCAACTAAGCCAACAGTTGGCCGTTGAGCG
TAAACGTAACGATGAGCTCTGTCTCAGGATTGAACAGTTACAAATTACTT
TAGAAAGTGCTGATATTAATTACGAGATACTCAAACAAAAATTCATGGAA
CAATTTCAAACATTCCAAGACgaattgaatattttgaaacgcAACTATCA
TAAACATACTGAAAGTGGACCCAACTCACCGTCCTTGGGTCGACGCCGCC
GTGCCATAAACACGGTTTCGGAACaacaaaatgaattaaaaatacTGACC
AATACAGTGGAAGAAAATACCAGAAACATTGATGATATTGACTTACGATT
ACAGATACATGAAAACACTAGATATAACGGTCGCATATTATGGAAGATTG
ACGACTTTCATTCCAGAAGACAACAAGTCTTATCAGGTGAACTCCACGCT
TTACATAGTGCGCCTTGTTATTCAAGTGATTATGGATACAAATTTTGTTT
ACGTGCTTACCTCAATGGCGATGGAGTTGGAGAAGGAACACACGTGTCCC
TTTTCCTTGTCGTCATGAAGTCCGACCATGATCGAGTCTTAGAATGGCCT
TTCCAAAAGAAAGTGAAGATGACACTAATCAATCAACAAAATCGGCGTCG
TGATCATACAGAAGTCATGACACCGAATAAAGACTCAGCTAGTTTTCAAC
GGCCAAAAAATGACACCAATGTTGCGTCTGGTTGTCCGCTTTTTATGGCG
CTCGATCGCTTAGATGCAGAAGGGTTTGTCAAAGAAGATGTATTATTTTT
TGATGTTACCGTTGAGTGACTTCCTATTTTTGTATACCTTTCTTCATTTT
GTAAAAcctttgctttttatttttatgaaaaacattCTTTTGTATAAAAT
GTTATATATAAACCATTGTTATTTTATGTTATATTTACCAACAAACAGCT
TTctttaaaatactaaaaaaatagttttgtaTCGGAAAAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066100-exon-scaffold_450-1491911889:107137..107308 | TCONS_00066100-exon-scaffold_450-1491911889:107137..107308 | Clytia hemisphaerica | exon |
| TCONS_00066100-exon-scaffold_450-1510915933:107137..107308 | TCONS_00066100-exon-scaffold_450-1510915933:107137..107308 | Clytia hemisphaerica | exon |
| TCONS_00066100-exon-scaffold_450-1575043694:107137..107308 | TCONS_00066100-exon-scaffold_450-1575043694:107137..107308 | Clytia hemisphaerica | exon |
| TCONS_00066100-exon-scaffold_450-1491911889:109488..110580 | TCONS_00066100-exon-scaffold_450-1491911889:109488..110580 | Clytia hemisphaerica | exon |
| TCONS_00066100-exon-scaffold_450-1510915933:109488..110580 | TCONS_00066100-exon-scaffold_450-1510915933:109488..110580 | Clytia hemisphaerica | exon |
| TCONS_00066100-exon-scaffold_450-1575043694:109488..110580 | TCONS_00066100-exon-scaffold_450-1575043694:109488..110580 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_450 | supercontig | scaffold_450:107137..110580 + |
Blast
BLAST of TCONS_00066100 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 6.654e-48 Identity = 70/163 (42.94%), Postives = 114/163 (69.94%), Query Frame = 2
Query: 599 IDDIDLRLQIHENTRYNGRILWKIDDFHSRRQQVLSGELHALHSAPCYSSDYGYKFCLRAYLNGDGVGEGTHVSLFLVVMKSDHDRVLEWPFQKKVKMTLINQQNRRRDHTEVMTPNKDSASFQRPKNDTNVASGCPLFMALDRLDAEGFVKEDVLFFDVTVE 1087
+ D+DLR Q+ E YNG ++WKI D+ R+Q+ + G+ +L+S P Y+ +GYK C R YLNGDG+G+GTH+SLF V+M+ ++D +L WPF++KV + L++Q + RR + P+ +S+SF++P + N+ASGCP+F+A L+ ++K+D +F V V+
Sbjct: 399 LADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
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