TCONS_00066112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066112
Unique NameTCONS_00066112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066112 ID=TCONS_00066112|Name=TCONS_00066112|organism=Clytia hemisphaerica|type=transcript|length=538bp
TGCTTCTGGGCTTAAGAAGAAACATTCTTGGACATACTTCAAGATATCCT
GTCGATTCGTTGCGATGAAAACTCCCTCTGAATTTTCAACGGTCGCTGCT
TTAACAACCAAAGGATAGCCGTACTTCTGCTCCAAATCTGTTATCAAACA
TTCATCAACATCCTGATGATAGAGCTCCACTCCTGGTGCAACACACACGT
CAGCTGCTTGAAGAAAATTTCTGGTCAAAGCTTTGTTGTTTGTGAGGAAA
TGTTTGTCTGCTGTCGATCCTAAGATTGGTATGTCGAGAATCTCCAAAGC
TGAGCGATAGGTGGTGCTTCCTTTGGTTCCATAAACGTGATAGATGATAA
CATCAGGATTAACTTCTTCAATTCTTTCCAACAAGGCTTCAAACTCGTGT
GTTTCTGTGCGACTATCGATGAAAGATTTGTCATCGGGGTGCTCTATAAA
AGCTACTTTACCATCATGATGTATAATTGCATAGTAAAATTTGTAACGAT
CTGTCTCTAGATCAGCAATCTTGTGCATGTAATGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00066112-protein

>TCONS_00066112-protein ID=TCONS_00066112-protein|Name=TCONS_00066112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
LHYMHKIADLETDRYKFYYAIIHHDGKVAFIEHPDDKSFIDSRTETHEFE
ALLERIEEVNPDVIIYHVYGTKGSTTYRSALEILDIPILGSTADKHFLTN
NKALTRNFLQAADVCVAPGVELYHQDVDECLITDLEQKYGYPLVVKAATV
ENSEGVFIATNRQDILKYVQECFFLSPEA
Run BLAST on NCBI

transcript from alignment at scaffold_450:18462..18999

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066112 ID=TCONS_00066112|Name=TCONS_00066112|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at scaffold_450:18462..18999 (Clytia hemisphaerica)
CTTACATTACATGCACAAGATTGCTGATCTAGAGACAGATCGTTACAAAT
TTTACTATGCAATTATACATCATGATGGTAAAGTAGCTTTTATAGAGCAC
CCCGATGACAAATCTTTCATCGATAGTCGCACAGAAACACACGAGTTTGA
AGCCTTGTTGGAAAGAATTGAAGAAGTTAATCCTGATGTTATCATCTATC
ACGTTTATGGAACCAAAGGAAGCACCACCTATCGCTCAGCTTTGGAGATT
CTCGACATACCAATCTTAGGATCGACAGCAGACAAACATTTCCTCACAAA
CAACAAAGCTTTGACCAGAAATTTTCTTCAAGCAGCTGACGTGTGTGTTG
CACCAGGAGTGGAGCTCTATCATCAGGATGTTGATGAATGTTTGATAACA
GATTTGGAGCAGAAGTACGGCTATCCTTTGGTTGTTAAAGCAGCGACCGT
TGAAAATTCAGAGGGAGTTTTCATCGCAACGAATCGACAGGATATCTTGA
AGTATGTCCAAGAATGTTTCTTCTTAAGCCCAGAAGCA

Coding sequence (CDS) from alignment at scaffold_450:18462..18999

>TCONS_00066112 ID=TCONS_00066112|Name=TCONS_00066112|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_450:18462..18999 (Clytia hemisphaerica)
TTACATTACATGCACAAGATTGCTGATCTAGAGACAGATCGTTACAAATT
TTACTATGCAATTATACATCATGATGGTAAAGTAGCTTTTATAGAGCACC
CCGATGACAAATCTTTCATCGATAGTCGCACAGAAACACACGAGTTTGAA
GCCTTGTTGGAAAGAATTGAAGAAGTTAATCCTGATGTTATCATCTATCA
CGTTTATGGAACCAAAGGAAGCACCACCTATCGCTCAGCTTTGGAGATTC
TCGACATACCAATCTTAGGATCGACAGCAGACAAACATTTCCTCACAAAC
AACAAAGCTTTGACCAGAAATTTTCTTCAAGCAGCTGACGTGTGTGTTGC
ACCAGGAGTGGAGCTCTATCATCAGGATGTTGATGAATGTTTGATAACAG
ATTTGGAGCAGAAGTACGGCTATCCTTTGGTTGTTAAAGCAGCGACCGTT
GAAAATTCAGAGGGAGTTTTCATCGCAACGAATCGACAGGATATCTTGAA
GTATGTCCAAGAATGTTTCTTCTTAAGCCCAGAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041387XLOC_041387Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066112-exon-scaffold_450-1491911889:18462..18999TCONS_00066112-exon-scaffold_450-1491911889:18462..18999Clytia hemisphaericaexon
TCONS_00066112-exon-scaffold_450-1510915933:18462..18999TCONS_00066112-exon-scaffold_450-1510915933:18462..18999Clytia hemisphaericaexon
TCONS_00066112-exon-scaffold_450-1575043694:18462..18999TCONS_00066112-exon-scaffold_450-1575043694:18462..18999Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066112-proteinTCONS_00066112-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:18462..18999 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.105156	0.287403	0.0313361	22.6557	19.2985	0.51051	2.2657	0	0.744222	0	0	0	0	0	0.28769	0.667527	0.486617	0	0	0.208522	0.152565	0.423345	0.213786	1.63436	5.65243	0.690353	0	2.30203	0.849253
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005479CbamoylP_synth_lsu-like_ATP-bd
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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