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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066160 ID=TCONS_00066160|Name=TCONS_00066160|organism=Clytia hemisphaerica|type=transcript|length=1639bpRun BLAST on NCBI protein sequence of TCONS_00066160-protein >TCONS_00066160-protein ID=TCONS_00066160-protein|Name=TCONS_00066160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp MAGLALVLSYVLENSFICIERIAFIQSWLLNSTNLQHIHWSVDLKQQQIQRun BLAST on NCBI transcript from alignment at scaffold_451:547867..631750+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066160 ID=TCONS_00066160|Name=TCONS_00066160|organism=Clytia hemisphaerica|type=transcript|length=83884bp|location=Sequence derived from alignment at scaffold_451:547867..631750+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_451:547867..631750+ >TCONS_00066160 ID=TCONS_00066160|Name=TCONS_00066160|organism=Clytia hemisphaerica|type=CDS|length=24531bp|location=Sequence derived from alignment at scaffold_451:547867..631750+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066160 vs. Swiss-Prot (Human)
Match: MTMRE (Myotubularin-related protein 14 OS=Homo sapiens GN=MTMR14 PE=1 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 2.996e-84 Identity = 149/375 (39.73%), Postives = 232/375 (61.87%), Query Frame = 3
Query: 321 YSAKNLFTANGSSKQLGMQMKCMELFERDYKIQIIDNDEGELCTTYPNKMAYFLGYQDEEEDRISRESARRSLPIAPGRYRQYVERTKTARVYSRFILPCIFMKNFKVVSRAATISTTAEVFWKNG----IRGILPQKFSSRMD-RDKKYADDSWDLNIVNKKRLVDIELLKQMNIQYIVDMMVEVKKIKHGVIVSSSEKVDKHQRYKEFDLICTPFPGCELMMDM-DQLFSKEGLFFDWTEDFVNTELMVPNTVLQYADEIDWTKYKEWDIVLLLQNYMLLMIRTLR-EGKSNMMIHCISGWDRTPMWTCLLRLSLWADGETHPNLNADEILYLTLAYDWFFFGHNLGNRRRRGEFVLHFTYMFLPYIRSEKYS 1424
Y AK+ + G SK ++ +C+ELF RDY +I N G++C YP + FL Y+ E+++ + ES + + + + R+K AR RF+ P I K K + R+AT++ E++ ++G G ++ D ++ A S D ++ +K R DI+LL+ ++++YI D+MVE KK+K G+ V+SSEKVDK QRY +F L+ P+PGCE + D+ + EGL F+W +D+V+ L +P+ L ++ IDW++Y+ WD+V QNY+ L++ + + S +++HCISGWDRTP++ LLRLSLWADG H +L EILYLT+AYDWF FGH L +R +GE + F + FL +I SE++S
Sbjct: 41 YRAKD-GSGTGGSKVERIEKRCLELFGRDYCFSVIPNTNGDICGHYPRHIV-FLEYESSEKEKDTFEST-----VQVSKLQDLIHRSKMARCRGRFVCPVILFKG-KHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEEDCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYADFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPD-FLTHSLNIDWSQYQCWDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKPTEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFS 406 The following BLAST results are available for this feature:
BLAST of TCONS_00066160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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