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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066168 ID=TCONS_00066168|Name=TCONS_00066168|organism=Clytia hemisphaerica|type=transcript|length=1551bp
CATAAACATACATAAACGACTGAAAGTTGttgaaaaaagttattcaaaGC
TGCGAACTTTGAGATGAtgttgaaatcaaaaatttaatttaattgagTTT
CAGAGAGTTTCACGAAGGCTTTAAAGGGGGATCAATCACATACAGTAACA
TAAGAAGTCATTTCGAGCACTCAAAGCTTTAAAAGATCGATTCTGTCGAA
TTCTGATAATAAAAAGAGTCGACTAACACAGGCGCGACAATGTTTATAAT
TTTATGTATTGGTGGTCTCATTGTCGCTACAGAGGCGGTTTTACGCCCGG
GTGGAATACCAAACTCCACTTACATAGCTTCGAAAGACACATGGGTGTGC
CCCATTATCAAAGAAGAGGGCGTTACTGGCAGTTTGAAGAAGGCATCACT
GAAGGTCACTCATTGCCCTGTTGCATCAGATGATGGGTTCCGATGTCCAG
GATATATGAATCCGGTCGATTTCGTTTTGACCAAAGGAGAAGAAGCTGTC
ATTATCAAGGAAGGAAATAAATCTTACTACCAGACATCACAACTTGCGCA
GTTCTTTGGCAACAAGGTTTGTATTAGTTATCCTTATTATGCTTACACAA
CTTCGAAGAAAGAAATCACAGCCCAATGTCGCTCCAAATGTTTCAAAACT
ACACATGGTCCGATCATTGCAAACAGAATGATTAATTTATTAGGGCGTTA
TGCAGGTAATGGCTATCGTTACGATGTAACATCTTCGAGTACTACGATAA
AGCCGATGTGGTTGTTCACACTACTGTTTGTGATGCTTGGTTTTAGCAGC
ATGCCTTAGAAAACCATTACAATTTACGAAAGCATCCAGCTAGGACCTTT
TTTCaacatctgtttcccaggcatagccttcctggaaaatttgaactATC
GGCCAAAAGtgtcaaaaatcttattcctagaaatgaagatgttttgaaaa
ttcttaatctcaaagtatcttccctagaaaattGGGTCTgtttccatttt
tcaaaaaggaagAACTCTTTAGCTAAGACAATGTAGATAGCGGTGATAAA
AGCTTCAGGATGTAGCGGGATCTAAATGAGATGAATAAGTTCTGCCTGTC
GAACCTTACACGACGAAAAACCTTTACGAACCTTTGAGAAATCTTTACGA
AGACAACCTTTATGACCTTAGAAGGTCATAAGGTCATAAATTTTATTATA
ATATTCATATATTGTACCTATTCTATACTTATGCaaatttttatgattct
gaaTGAATATGTTTAAATAAATTGAAGTTTTAAGAAGAGTAGACGCAACG
GGCCacgttcattttttttattccgGCATTTTTCATTTATGCATTCATTC
AATGTATATGTACAGTGATTATACAATAAAATTATTACACAAtatcattt
tgatattttgatcaaaaactcgtcaaattttattgttccatatTTTAAGA
CCTCATACCGCGTCATACGAGGTTAATAAAGGTCCGAATTGCTACGAAAA
TAATGCTGAGCTTGCGAAAACATTGCAGTTATTAAAACAAATCATTGCGC
G Run BLAST on NCBI protein sequence of TCONS_00066168-protein >TCONS_00066168-protein ID=TCONS_00066168-protein|Name=TCONS_00066168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MFIILCIGGLIVATEAVLRPGGIPNSTYIASKDTWVCPIIKEEGVTGSLK
KASLKVTHCPVASDDGFRCPGYMNPVDFVLTKGEEAVIIKEGNKSYYQTS
QLAQFFGNKVCISYPYYAYTTSKKEITAQCRSKCFKTTHGPIIANRMINL
LGRYAGNGYRYDVTSSSTTIKPMWLFTLLFVMLGFSSMP Run BLAST on NCBI transcript from alignment at scaffold_451:803307..806976+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066168 ID=TCONS_00066168|Name=TCONS_00066168|organism=Clytia hemisphaerica|type=transcript|length=3670bp|location=Sequence derived from alignment at scaffold_451:803307..806976+ (Clytia hemisphaerica)
CATAAACATACATAAACGACTGAAAGTTGttgaaaaaagttattcaaaGC
TGCGAACTTTGAGATGAtgttgaaatcaaaaatttaatttaattgagTTT
CAGAGAGTTTCACGAAGGCTTTAAAGGGGGATCAATCACATACAGTAACA
TAAGAAGTCATTTCGAGCACTCAAAGCTTTAAAAGATCGATTCTGTCGAA
TTCTGATAATAAAAAGAGTCGACTAACACAGGCGCGACAATGTTTATAAT
TTTATGTATTGGTGGTCTCATTGTCGCTACAGAGGCGGTTTTACGCCCGG
GTGGAATACCAAACTCCACTTACATAGCTTCGAAAGACACATGGGTGTGC
CCCATTATCAAAGAAGAGGGCGTTACTGGCAGTTTGAAGAAGGTAATAAT
AAGCCTCCTTCCTCTCTTCCTCCCTTCCTCCTTCCTGAATCTGTATGAAA
AGGTTTTTTATCATCACCCCAGACATTGTATGCTTTGCTAAAGTGCGTGG
TTGAAGTTTTTGCCACTGTTTTACGAAACAGACAATGAGTAGTGACAGCA
GTGAATCAAATCATTcatcgaaaaatttttgttttctaaacaTTATATGC
TTTAAAGAGAGACACTCGGCTAAATTGTAATTGAAGATTTGACAGTGTTT
AGCGTGACAGACAGTGGCATCGAATCGAATCGAACTTCAACTTTTAAGAA
GATATTGTTTATGTTTTCTAAACATTATATGCTTTAGAAAGAGAGACACT
TGGCTAGATTGTAGTTGAAGTTTTGTCAGTGTTTAGCGTGACAGACAGTA
CTCTGTACCaaagtgtatctcacgtttatcgcttcgtagtactctatggc
aatgaattttgaaataaaccaTAGATACTGGGTTTGTGTNTGCAACTTTT
AAGAAGATATTGTTTATGTTTTCTAAACATTATATGCTTTAGAAAGAGAG
ACACTTGGCTTGTAGTTGAAGTTTTGACAGTGTTTAGCGTGATAGACAGT
AATACTCTATACCAAAGTGTAtatcacgtttatcgcttcgtagtactcTA
TGgcaaagaattttgaaataaaccgTAGCtactgggtttgtgtacagaca
agacAGGAATCGAATCGAACTTCAACTTTTTAAGAAGACTGTTTATGGTT
TCATCTTGTTAGGCATCACTGAAGGTCACTCATTGCCCTGTTGCATCAGA
TGATGGGTTCCGATGTCCAGGATATATGAATCCGGTCGATTTCGTTTTGA
CCAAAGGAGAAGAAGCTGTCATTATCAAGGAAGGAAATAAATCTTACTAC
CAGACATCACAACTTGCGCAGTTCTTTGGTAAGCATTCGTCTTCCTTCTT
ATCAAATTCTACATATAGCTACCTTAGTCCAAGTACCCcaaattcaaaag
gggcctaagtccaggtACACCAAAATCTCAAAATGGGCCTAAGTCCAAGC
TCCCcaaattcaaaaggggcctaagttcAAGTTCCCCGAATTCAAAAGGG
TCTTAAGTCCAAGCTCTCCAAATTCAAAAGAGTCCTAAGTCCTAGTACCC
CTAATTCAAGTTCTTTGGTAAGCatttctggcgagaaagtcactTCTGGG
CTATTATTAAATGCTTTTTGATCctcttaagtctagtgttaaaactctac
acttccAATCTAAGTTAGAGCGCTTTCAAATCGTCTGTGGCTATAAGATC
TTGtggggatttcccttttttctcaaatattatgacgtTGATTgtacctt
aattcaaaagaaGCCTAAGCCAATCAACCccaattcaaaaggggccttaG
TCCAAGTACCCCCAATTCAAAAGGGATCTAAGTCCAGATACCCCAATTCA
AAAGGGGCCCCAAATCTAGGTACCCCAAAAtctcaaaaggggcctaagtc
caagTACCCCAAAATCTCAAATGGGGCCTAAGTCCAGGTACCCCAAAATC
TCAAAAGGGACCTAAGTCCAGGTACCCCCAATTCAAAAGGGGCTTAattc
cattttcattaaatttgagaTTGTCACAAAGCACTGCTTCTTCGTTATCA
ATCATAATTCATATAGTTAGTGGagtacaatcagggacaaaatacttggc
acaaaaaggaaattcaccggggtgttttgaaaccataatcgatttgtaag
tgctctaaagtaggttcgaagggtagagttttaacgctagacttttgact
taggaccttaggatctgaggatccaaaagtttaaaaatggtccagtaggg
cttgaaatatagcctagaaaccaataaatccctccgaGATCAAAATACTC
GATGAAATCAaattgaaggcctaaaaattgagaTTCTcactcgaacttca
attttcgaaaaattgtaaattagccaaaagtgccaatatattatgacact
GATTGTAGTTATAGAATGGAGTCTCCTTAACTCGGATAAGTTTTATGGTT
CCTTCACTAGTTAACAATGCTTTATAAACCTCACTCAATAACACGAAATT
TCCAGctctcgaacaaatttgcgttcccGTGTGTTTTTGAGTCATGGAGA
CTAAACTGTACTAATATTCCCGTGTGTTTTTGAGTCATGGAGACTAAACT
GTACTAATATTCCCGTGTGTTTTTGAGTCATGGAGACTAAACTGTACTAA
ATTGGATATATCCCCTTTATTTTTCAGGCAACAAGGTTTGTATTAGTTAT
CCTTATTATGCTTACACAACTTCGAAGAAAGAAATCACAGCCCAATGTCG
CTCCAAATGTTTCAAAACTACACATGGTCCGATCATTGCAAACAGAATGA
TTAATTTATTAGGGCGTTATGCAGGTAATGGCTATCGTTACGATGTAACA
TCTTCGAGTACTACGATAAAGCCGATGTGGTTGTTCACACTACTGTTTGT
GATGCTTGGTTTTAGCAGCATGCCTTAGAAAACCATTACAATTTACGAAA
GCATCCAGCTAGGACCTTTTTTCaacatctgtttcccaggcatagccttc
ctggaaaatttgaactATCGGCCAAAAGtgtcaaaaatcttattcctaga
aatgaagatgttttgaaaattcttaatctcaaagtatcttccctagaaaa
ttGGGTCTgtttccatttttcaaaaaggaagAACTCTTTAGCTAAGACAA
TGTAGATAGCGGTGATAAAAGCTTCAGGATGTAGCGGGATCTAAATGAGA
TGAATAAGTTCTGCCTGTCGAACCTTACACGACGAAAAACCTTTACGAAC
CTTTGAGAAATCTTTACGAAGACAACCTTTATGACCTTAGAAGGTCATAA
GGTCATAAATTTTATTATAATATTCATATATTGTACCTATTCTATACTTA
TGCaaatttttatgattctgaaTGAATATGTTTAAATAAATTGAAGTTTT
AAGAAGAGTAGACGCAACGGGCCacgttcattttttttattccgGCATTT
TTCATTTATGCATTCATTCAATGTATATGTACAGTGATTATACAATAAAA
TTATTACACAAtatcattttgatattttgatcaaaaactcgtcaaatttt
attgttccatatTTTAAGACCTCATACCGCGTCATACGAGGTTAATAAAG
GTCCGAATTGCTACGAAAATAATGCTGAGCTTGCGAAAACATTGCAGTTA
TTAAAACAAATCATTGCGCG Coding sequence (CDS) from alignment at scaffold_451:803307..806976+ >TCONS_00066168 ID=TCONS_00066168|Name=TCONS_00066168|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_451:803307..806976+ (Clytia hemisphaerica)
ATGTTTATAATTTTATGTATTGGTGGTCTCATTGTCGCTACAGAGGCGGT
TTTACGCCCGGGTGGAATACCAAACTCCACTTACATAGCTTCGAAAGACA
CATGGGTGTGCCCCATTATCAAAGAAGAGGGCGTTACTGGCAGTTTGAAG
AAGGCATCACTGAAGGTCACTCATTGCCCTGTTGCATCAGATGATGGGTT
CCGATGTCCAGGATATATGAATCCGGTCGATTTCGTTTTGACCAAAGGAG
AAGAAGCTGTCATTATCAAGGAAGGAAATAAATCTTACTACCAGACATCA
CAACTTGCGCAGTTCTTTGGCAACAAGGTTTGTATTAGTTATCCTTATTA
TGCTTACACAACTTCGAAGAAAGAAATCACAGCCCAATGTCGCTCCAAAT
GTTTCAAAACTACACATGGTCCGATCATTGCAAACAGAATGATTAATTTA
TTAGGGCGTTATGCAGGTAATGGCTATCGTTACGATGTAACATCTTCGAG
TACTACGATAAAGCCGATGTGGTTGTTCACACTACTGTTTGTGATGCTTG
GTTTTAGCAGCATGCCTTAGATGTTTATAATTTTATGTATTGGTGGTCTC
ATTGTCGCTACAGAGGCGGTTTTACGCCCGGGTGGAATACCAAACTCCAC
TTACATAGCTTCGAAAGACACATGGGTGTGCCCCATTATCAAAGAAGAGG
GCGTTACTGGCAGTTTGAAGAAGGCATCACTGAAGGTCACTCATTGCCCT
GTTGCATCAGATGATGGGTTCCGATGTCCAGGATATATGAATCCGGTCGA
TTTCGTTTTGACCAAAGGAGAAGAAGCTGTCATTATCAAGGAAGGAAATA
AATCTTACTACCAGACATCACAACTTGCGCAGTTCTTTGGCAACAAGGTT
TGTATTAGTTATCCTTATTATGCTTACACAACTTCGAAGAAAGAAATCAC
AGCCCAATGTCGCTCCAAATGTTTCAAAACTACACATGGTCCGATCATTG
CAAACAGAATGATTAATTTATTAGGGCGTTATGCAGGTAATGGCTATCGT
TACGATGTAACATCTTCGAGTACTACGATAAAGCCGATGTGGTTGTTCAC
ACTACTGTTTGTGATGCTTGGTTTTAGCAGCATGCCTTAGATGTTTATAA
TTTTATGTATTGGTGGTCTCATTGTCGCTACAGAGGCGGTTTTACGCCCG
GGTGGAATACCAAACTCCACTTACATAGCTTCGAAAGACACATGGGTGTG
CCCCATTATCAAAGAAGAGGGCGTTACTGGCAGTTTGAAGAAGGCATCAC
TGAAGGTCACTCATTGCCCTGTTGCATCAGATGATGGGTTCCGATGTCCA
GGATATATGAATCCGGTCGATTTCGTTTTGACCAAAGGAGAAGAAGCTGT
CATTATCAAGGAAGGAAATAAATCTTACTACCAGACATCACAACTTGCGC
AGTTCTTTGGCAACAAGGTTTGTATTAGTTATCCTTATTATGCTTACACA
ACTTCGAAGAAAGAAATCACAGCCCAATGTCGCTCCAAATGTTTCAAAAC
TACACATGGTCCGATCATTGCAAACAGAATGATTAATTTATTAGGGCGTT
ATGCAGGTAATGGCTATCGTTACGATGTAACATCTTCGAGTACTACGATA
AAGCCGATGTGGTTGTTCACACTACTGTTTGTGATGCTTGGTTTTAGCAG
CATGCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066168-exon-scaffold_451-1491911889:803307..803698 | TCONS_00066168-exon-scaffold_451-1491911889:803307..803698 | Clytia hemisphaerica | exon |
| TCONS_00066168-exon-scaffold_451-1510915933:803307..803698 | TCONS_00066168-exon-scaffold_451-1510915933:803307..803698 | Clytia hemisphaerica | exon |
| TCONS_00066168-exon-scaffold_451-1575043694:803307..803698 | TCONS_00066168-exon-scaffold_451-1575043694:803307..803698 | Clytia hemisphaerica | exon |
| TCONS_00066168-exon-scaffold_451-1491911889:804469..804634 | TCONS_00066168-exon-scaffold_451-1491911889:804469..804634 | Clytia hemisphaerica | exon |
| TCONS_00066168-exon-scaffold_451-1510915933:804469..804634 | TCONS_00066168-exon-scaffold_451-1510915933:804469..804634 | Clytia hemisphaerica | exon |
| TCONS_00066168-exon-scaffold_451-1575043694:804469..804634 | TCONS_00066168-exon-scaffold_451-1575043694:804469..804634 | Clytia hemisphaerica | exon |
| TCONS_00066168-exon-scaffold_451-1491911889:805984..806976 | TCONS_00066168-exon-scaffold_451-1491911889:805984..806976 | Clytia hemisphaerica | exon |
| TCONS_00066168-exon-scaffold_451-1510915933:805984..806976 | TCONS_00066168-exon-scaffold_451-1510915933:805984..806976 | Clytia hemisphaerica | exon |
| TCONS_00066168-exon-scaffold_451-1575043694:805984..806976 | TCONS_00066168-exon-scaffold_451-1575043694:805984..806976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:803307..806976 + |
Blast
The following BLAST results are available for this feature:
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