TCONS_00066169 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066169
Unique Name	TCONS_00066169
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1185

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_451:913921..915284+
coding sequence from alignment at scaffold_451:913921..915284+

transcript sequence

>TCONS_00066169 ID=TCONS_00066169|Name=TCONS_00066169|organism=Clytia hemisphaerica|type=transcript|length=1185bp
ctttcagcaaagatggcggattattttgTTTCAACTGCCGTTGCTTGGGA
AAAAGAGactagctctatctagtgtttcatATAAAATACATGTTTTATCC
AATGCAGTAATAGCCATCATTAcatgtatatttatttttcattttatagc
tataaaatacaaaaagaaaatgagtaataacaataacaatacaaatgaaa
ataattacatacaaaaattacaagaaaCAATAGAAAAGAATACACATAAT
GATCAACAAGATGAACCAGAAGTTCATATTCTGGATGAAAACGATGGCCA
GTTGTTGTTTTGTGAACAAGAAAGACTGGATCAGAGTTCACCAGAACTAT
GGCCGGAGACTATTCCAGGAGTTAGTGAATTTACAGCATCGTCCTTATTT
AACAGTCCACCAAAACCTGTTTTGAATACtACGATGAGTCAGTTAAAAGA
TTCCAAACTCACTTTGGAAGACCTAGAGATGCTGCAAGAGTTTGGTAATC
TGAGCCTTATTCAACTTATGGAGAAATTTCACAATCTTAAGAACCAAGCT
TACCAGGTTGGACTGGAAGAATCTCGTGAAATGACTAGAGGGAGATATTT
GAACGTCCTTGGTAAAAAGAAGTGATTAATATGGAGTACGACCGACCAGC
AAACTACGAAAATTTGCTGTGAATTGATACTTTTTCAGTTGATTTGATAG
ACTGGTAAATTCTCGTGAAATGATTAATATTTGAATGTCCTTGGTAAAAA
GAAGTGATTAATATGGAGTACGGCCGACCAGCAAACTACGAAAATTTGCT
GTGAATTGATACTTTTTCAGTTGATTTGATAGACTGGTAAATTCTCGTGA
AATGATTAATATTTGAATGTCCTTGGTAAAAAGAAGTGATTAATATGGAG
TACGGCCGACCAGCAAACTACGAAAATTTGCTGTGAATTGATACTTTTTC
AGTTGATTTGATAGACTGGTAAATTCTCGTGAAATGATTAATATTTGAAT
GTCCTTGGTAAAAAGAAGTGATTAATATGGAGTACGGCCGACCAGCAAAC
TACGAAAATTTGCTGTGAATTGATACTTTTTCAGATGATTTGATAGACTG
GTAAATTCTCGTGAAATGATTAATATTTGAATGTCCTTGGTAAAAAGAAG
TGATTAATATGGAGTACGGCCGACCAGCAAACTAC

Run BLAST on NCBI

protein sequence of TCONS_00066169-protein

>TCONS_00066169-protein ID=TCONS_00066169-protein|Name=TCONS_00066169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
FQQRWRIILFQLPLLGKKRLALSSVSYKIHVLSNAVIAIITCIFIFHFIA
IKYKKKMSNNNNNTNENNYIQKLQETIEKNTHNDQQDEPEVHILDENDGQ
LLFCEQERLDQSSPELWPETIPGVSEFTASSLFNSPPKPVLNTTMSQLKD
SKLTLEDLEMLQEFGNLSLIQLMEKFHNLKNQAYQVGLEESREMTRGRYL
NVLGKKK

Run BLAST on NCBI

transcript from alignment at scaffold_451:913921..915284+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066169 ID=TCONS_00066169|Name=TCONS_00066169|organism=Clytia hemisphaerica|type=transcript|length=1364bp|location=Sequence derived from alignment at scaffold_451:913921..915284+ (Clytia hemisphaerica)
ctttcagcaaagatggcggattattttgTTTCAACTGCCGTTGCTTGGGA
AAAAGAGactagctctatctagtgtttcatATAAAATACATGTTTTATCC
AATGCAGTAATAGCCATCATTAcatgtatatttatttttcattttatagc
tataaaatacaaaaagaaaatgagtaataacaataacaatacaaatgaaa
ataattacatacaaaaattacaagaaaCAATAGAAAAGAATACACATAAT
GATCAACAAGATGAACCAGAAGTTCATATTCTGGATGAAAACGATGGCCA
GTTGTTGTTTTGTGAACAAGAAAGACTGGATCAGAGTTCACCAGAACTAT
GGCCGGAGACTATTCCAGGAGTTAGTGAATTTACAGCATCGTCCTTATTT
AACAGTCCACCAAAACCTGTTTTGAATACtgtaagtttgtttgtttatat
tGTGTAAGTGACTTGACCCTCTTTTCCAGGCTTCCTGAATGTTTGGTAGA
AGGGTCAACAAGAGAATTAGCGAATTTAGCCCTTCTACTTTTATGGTTGT
TCCGCTGGGCCTTATGTtagaaaaaaaaccattttgatatacttttcttt
ttcgttcagACGATGAGTCAGTTAAAAGATTCCAAACTCACTTTGGAAGA
CCTAGAGATGCTGCAAGAGTTTGGTAATCTGAGCCTTATTCAACTTATGG
AGAAATTTCACAATCTTAAGAACCAAGCTTACCAGGTTGGACTGGAAGAA
TCTCGTGAAATGACTAGAGGGAGATATTTGAACGTCCTTGGTAAAAAGAA
GTGATTAATATGGAGTACGACCGACCAGCAAACTACGAAAATTTGCTGTG
AATTGATACTTTTTCAGTTGATTTGATAGACTGGTAAATTCTCGTGAAAT
GATTAATATTTGAATGTCCTTGGTAAAAAGAAGTGATTAATATGGAGTAC
GGCCGACCAGCAAACTACGAAAATTTGCTGTGAATTGATACTTTTTCAGT
TGATTTGATAGACTGGTAAATTCTCGTGAAATGATTAATATTTGAATGTC
CTTGGTAAAAAGAAGTGATTAATATGGAGTACGGCCGACCAGCAAACTAC
GAAAATTTGCTGTGAATTGATACTTTTTCAGTTGATTTGATAGACTGGTA
AATTCTCGTGAAATGATTAATATTTGAATGTCCTTGGTAAAAAGAAGTGA
TTAATATGGAGTACGGCCGACCAGCAAACTACGAAAATTTGCTGTGAATT
GATACTTTTTCAGATGATTTGATAGACTGGTAAATTCTCGTGAAATGATT
AATATTTGAATGTCCTTGGTAAAAAGAAGTGATTAATATGGAGTACGGCC
GACCAGCAAACTAC

Coding sequence (CDS) from alignment at scaffold_451:913921..915284+

>TCONS_00066169 ID=TCONS_00066169|Name=TCONS_00066169|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_451:913921..915284+ (Clytia hemisphaerica)
tttcagcaaagatggcggattattttgTTTCAACTGCCGTTGCTTGGGAA
AAAGAGactagctctatctagtgtttcatATAAAATACATGTTTTATCCA
ATGCAGTAATAGCCATCATTAcatgtatatttatttttcattttatagct
ataaaatacaaaaagaaaatgagtaataacaataacaatacaaatgaaaa
taattacatacaaaaattacaagaaaCAATAGAAAAGAATACACATAATG
ATCAACAAGATGAACCAGAAGTTCATATTCTGGATGAAAACGATGGCCAG
TTGTTGTTTTGTGAACAAGAAAGACTGGATCAGAGTTCACCAGAACTATG
GCCGGAGACTATTCCAGGAGTTAGTGAATTTACAGCATCGTCCTTATTTA
ACAGTCCACCAAAACCTGTTTTGAATACtACGATGAGTCAGTTAAAAGAT
TCCAAACTCACTTTGGAAGACCTAGAGATGCTGCAAGAGTTTGGTAATCT
GAGCCTTATTCAACTTATGGAGAAATTTCACAATCTTAAGAACCAAGCTT
ACCAGGTTGGACTGGAAGAATCTCGTGAAATGACTAGAGGGAGATATTTG
AACGTCCTTGGTAAAAAGAAGTGAtttcagcaaagatggcggattatttt
gTTTCAACTGCCGTTGCTTGGGAAAAAGAGactagctctatctagtgttt
catATAAAATACATGTTTTATCCAATGCAGTAATAGCCATCATTAcatgt
atatttatttttcattttatagctataaaatacaaaaagaaaatgagtaa
taacaataacaatacaaatgaaaataattacatacaaaaattacaagaaa
CAATAGAAAAGAATACACATAATGATCAACAAGATGAACCAGAAGTTCAT
ATTCTGGATGAAAACGATGGCCAGTTGTTGTTTTGTGAACAAGAAAGACT
GGATCAGAGTTCACCAGAACTATGGCCGGAGACTATTCCAGGAGTTAGTG
AATTTACAGCATCGTCCTTATTTAACAGTCCACCAAAACCTGTTTTGAAT
ACtACGATGAGTCAGTTAAAAGATTCCAAACTCACTTTGGAAGACCTAGA
GATGCTGCAAGAGTTTGGTAATCTGAGCCTTATTCAACTTATGGAGAAAT
TTCACAATCTTAAGAACCAAGCTTACCAGGTTGGACTGGAAGAATCTCGT
GAAATGACTAGAGGGAGATATTTGAACGTCCTTGGTAAAAAGAAGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041417	XLOC_041417	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00066169-protein	TCONS_00066169-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00066169-exon-scaffold_451-1491911889:913921..914350	TCONS_00066169-exon-scaffold_451-1491911889:913921..914350	Clytia hemisphaerica	exon
TCONS_00066169-exon-scaffold_451-1510915933:913921..914350	TCONS_00066169-exon-scaffold_451-1510915933:913921..914350	Clytia hemisphaerica	exon
TCONS_00066169-exon-scaffold_451-1575043694:913921..914350	TCONS_00066169-exon-scaffold_451-1575043694:913921..914350	Clytia hemisphaerica	exon
TCONS_00066169-exon-scaffold_451-1491911889:914530..915284	TCONS_00066169-exon-scaffold_451-1491911889:914530..915284	Clytia hemisphaerica	exon
TCONS_00066169-exon-scaffold_451-1510915933:914530..915284	TCONS_00066169-exon-scaffold_451-1510915933:914530..915284	Clytia hemisphaerica	exon
TCONS_00066169-exon-scaffold_451-1575043694:914530..915284	TCONS_00066169-exon-scaffold_451-1575043694:914530..915284	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_451	supercontig	scaffold_451:913921..915284 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0141	11.4494	7.90224	6.92578	10.5884	7.9797	11.4031	10.6754	9.92463	8.84052	9.83296	8.54578	6.06801	6.15105	6.21288	7.2433	12.798	10.0969	4.63692	4.44785	5.02579	5.03995	9.2526	8.33617	6.0883	6.65275	5.93135	4.14914	5.20461	6.57696

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR018737	DREAM_LIN52

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0007049	cell cycle

Vocabulary: **Cellular Component**
Term	Definition
GO:0070176	DRM complex

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0070176	DRM complex

Blast

[Close]

BLAST of TCONS_00066169 vs. Swiss-Prot (Human)
Match: LIN52 (Protein lin-52 homolog OS=Homo sapiens GN=LIN52 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.377e-25
Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = 2

Query:  320 ERLDQSSPELWPETIPGVSEFTAS---SLFNSPPKPVLNTTMSQLKDSKLTLEDLEMLQEFGNLSLIQLMEKFHNLKNQAYQVGLEESREMTRGRYLNVLGKKK 622
            E+LD++SP+LWPE +PGV+EF AS    + +SPPK +          +++  +D++ML+E G+L+   LMEK   L+N AYQ+GL+ESREMTRG++LN+L K K
Sbjct:   22 EKLDRASPDLWPEQLPGVAEFAASFKSPITSSPPKWM----------AEIERDDIDMLKELGSLTTANLMEKVRGLQNLAYQLGLDESREMTRGKFLNILEKPK 115

The following BLAST results are available for this feature:

BLAST of TCONS_00066169 vs. Swiss-Prot (Human)

BLAST of TCONS_00066169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LIN52	1.377e-25	48.08	Protein lin-52 homolog OS=Homo sapiens GN=LIN52 PE...	[more]

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TCONS_00066169 (transcript) - C. hemisphaerica