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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066239 ID=TCONS_00066239|Name=TCONS_00066239|organism=Clytia hemisphaerica|type=transcript|length=2115bp
agataaaaaaaatactgAGTGATAAATAGATTTAAAAACGAAAAGAAATC
AtacaagaattgaaaaaatagaATGGCTACTACATTAGAAAGCTACACCG
GTCATACGGTTGCTGTGATAACTCAAGATGGCAGAATGATTGTTGGAACG
TTAAAAGGATTCGATCAAGCGGTCAACCTGATATTGGATGAGAGTCATGA
GAGAGTTTTTTCACCGGAGAGTGGTGTCCAACAAGTTGTGCTTGGATTAT
ACATTGTGAGAGGAGACAACGTaGCTGTGATTGGTGAAATTGATGACGAG
ATTGATTCTGGAATCGAAATGCAGAGTGTCAAAGCTGAACCGTTCAATCC
AGTTGTTTATTGAGAaagatttatttattcattacATAGCGGTTTTTATG
TTTGACCGCGGTCATGCCATCTACATGAATTGGGAAGTGATGCAGctaat
attttgttttcattaatGATTAAAAGACCAAGACGTCGTGATCGTAAGGT
TTATTTATTAGACTTTTAATGGCTGGCAAAAGAGAGGTAAACATTCTGCC
GGCATTTTAATAacttaaaaatatgaaaatgtgaCGTTGGAGCTATTTGT
ATATATTGTTATGGCGGTTAAATGGATGCTGAAGAGACCTTTGCAATGTA
GCATTGGAATTTTTTGGTGGATATTGCTTTACAGGTCTGAATCGAGAGAA
TGTAGCATTAAAGGCTCTGATGATTACTCTTAACTGATTGaatgaaactt
tgaaaatgaaagagaaAAACTTATTGATCGCTGGTGTCGACTTTCATTGC
AAAAACAATGAGCAAACAAATTACAAGCTTGGAAATATAGTACACTATTT
TAGGAGACTgctcatctaacgtttccaaaccatctaaaaagaacgacaaa
ccctaaccctaactctAACTATCAAACAACGACATATTTCACCGCCCACA
AccccccgaccgaaagtgactgtaccacccatACGGATTCATTCCTCTTT
ATTTGTCacaggaattaactacatgtggtttaaaagaacgcaaaatTACG
GAActagctggagtttttacaagttctttcttgatttggttggtcgttaa
ccagtaatacaacaattttgttactttttctaaagaatgcgtcatctcta
tcacttcaaatgaccaattactgaagtatcttataaaaactccagaacat
cccaaaattacgcatgcgtataagtctctatttggatgagctggaaacat
tagatgaactaactcCTATAGAGGTGTTTGTTGTTTTGATGTCCTTTCTT
AATCCAGGATTGACCCTTTGAGAGTTATTAGAGCTCTTGTGTCAAGCTAG
TATCATTAAGACCGTAGACGGAAATCCGCCAAGTTAAGATTTTTCATTTG
CTATTCCAATagaccttatcagagtttttgatttttctaaaaaagcaatg
tattgtgggattgtttcgggagtattacaatagaaatctcttaggaattc
ctcgagggaattctattgtaatactcccgaaacaatcccacatatgcttc
gctgttttagaaaaatcaaaaacttcgaTAAGATCTATTGTAAGACTTGG
AAGAACGAAATATCTTGGaattttttctagaattttgaaCTTCCCTTCCA
GACTTCTCTCTCCTTAGATAGGTCTCCTTGAAAAGTGACGAAacataaaa
aaggaaaatccgAGAGAAATGACAATAGACAAATCTCAATCCCTTCATTA
GCTTAACCTATAATTCTATGACGATTATCTGTCTTAGGGTAAGAATTGAA
TTGAATCTTTCAAGAGTTTTTAGattcaaataaaattcaaatcaccGAAA
CTCTGATATAAAAAGTCCTTTTCAGACAGGCATATAGTCTTTACATGTTT
GATATATCATGATTATTTTAACAGATTAGTAGTAGACAtgtgtttttata
aatttttaaagttaacaaaaagttctattaaaaaaaaagaatttcgaaGA
GTTCCAGACTGAAATATTTTCTATACATTGTTATTATATTCTCTGAAGTG
GAAAGCAGACTTGGAATAAAGTTTGAAATTGCCTGTTTGAATAATTTTAA
AGTGCATTTTTGTTG Run BLAST on NCBI transcript from alignment at scaffold_451:786030..791866- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066239 ID=TCONS_00066239|Name=TCONS_00066239|organism=Clytia hemisphaerica|type=transcript|length=5837bp|location=Sequence derived from alignment at scaffold_451:786030..791866- (Clytia hemisphaerica)
AGATAAAAAAAATACTGAGTGATAAATAGATTTAAAAACGAAAAGAAATC
ATACAAGAATTGAAAAAATAGAATGGCTACTACATTAGAAAGCTACACCG
GTCGTAAGTATTACATTTTATATTTAACTGTTGACTATATATCTTTACAT
CCAACTTGTCATAGTTCGGAAGGGGGTAACTACCCCTCCTTTACCCTAGA
GCTACCCCCTACCCTAGGTTCTTCCCCCTTTTAAAATTTCATGCTACCCC
CTCAAATTTTAAACTGATAAAACATCCTTAACAATAAAGAAAGAAGACAT
TGCATTGTAAATCAAAAATCAAACTTCTAATTTGGGAAAGCACGAAAAAA
CACACCCCCATTTCTGAAAACTTCCCTTTCTACAAAAAGTTCTTTTACCC
CCCCCCTCCTATCTGATTTTTTTCTTCATTATCGCTACCACCCTCACCCC
CCCCCTAATAAAGAGGGGGGTTGCGAATAATGCTTTCCTGCACACAGAAG
TAAATATAAACGGTACGCTCACTATCCTGGTCCGGCTGGAAAATAAGACG
TTTAGCTAAATAATGACGGATAAACTTAGTAGGGGGTGGTACACCCAACA
CTTGCTCAAGCATTTCCCCCAATTTGAATTTTTAAAAAGAGTTTTATGGT
TTGCAATGCAGTATTTACTGAACTCTTTTTCCCTGATTTTCTTATCTTTT
GTTGTTGTTACCTTAGATACGGTTGCTGTGATAACTCAAGATGGCAGAAT
GATTGTTGTAAGAGATCCTCAATTTCTTATTCACTTAATCAATTTTCTTG
TTTGATACACCTTTTCGACCGTAGTCGCGCGGTCAGGCGCGTGCCACTTT
ATTATTTAATTTACCACCCTAAACTCGATCCAATCCTTTTTTACACTTTT
TATTTCTGTCTTTAGGTGCGAAAAAAAGAGTGGGACGGTTTTAGGGTGGT
AAAACGGACACAAAAATGCCCGCGCGGTGATTGGCGGCTACGGTCGAAAA
GGTGTATTGCAGTCATCTTTTCATCTTGCCCTGTTCTCTTTACTTCGAGA
CGGGTGTAAAAACTCATGACAATTGTATTTAAAGCTAGTCTATACGTATA
TGAAGCTATCATTAAGTGACGATCTTGCAAAAGCAATGTATAAAGTCTTA
CTTGTTTCATAAAGAAATGCAGGAAATGTACTTTAATGGGGTCAATTTTG
GAAGGGATTTTGGAGGGAATTTTCGAGGGAATTAAATTTCGCGGTTGAGC
TCATTCGCGAAATTTTAAGATTTCGTGGGGACTTAATTTCGCGGATAGTA
CTATTGGGTGACAATAATTTTCACGATTTTGTGCCTTTTACTGTCATGTT
AGTTGTCGAAAATGATAAGCGCCTCTTTGTTGCCATTGAGAATTCTAAAA
GTATTTATTTGACATTTTTTGAGTTTTGCTTAGAAATATTTCGCGGATAA
GGCCTTTCCAAATTTCCATTGGGATTTAATTTCGCGGATGACACTCAAAT
CCGCAAAATCCGCGAAATTAAGCTCTAGTTTAGACGGCCGACTTTCTGCC
CTGCCTATTCTAATTATTAGAGTAGGCAGAAAGTAGGCACAAAGTTGGCA
GTTAAAATCTTTGCTTGGAAAAGATTGAAAAAAGACATTGCATTGACGTC
AAAAGAGGGCAATGCATTGGCTTTAGACAGCCCACTTTATGCCCACTTTA
ATTCACAATTAGAATAGGCAGGGCGAAAAGTGGGCCGTCTAAACTAGAGC
TTAATCACATTAAAATATTTATAAAAAATAATTAAATCTCATCGAACACT
TTCAAAATTGTTCTCTGGTTTTTACTTTCAAGACCATCAGAACTAATTCA
AAAGCTGTTATAAATTTTTGGTAATTAAGTTCAAAGGGACAAAATGAGGA
TCACTATTTGGCAAACAAAATTGTTTGTATCAAATTTCAATTCATTAGAT
CAACTTCCTATGAACCTGGCAGAGTGGTCTATTTTTGCTCATACCAAGAG
CTCCGGGATCTAATCCCCATTCTTTTGATGTTCCGTTTACTCCGAAAAAG
GTTCTTCCGATTAGAAAACAATCAGATATCCATATGAAAGATAAAGTTGA
CTGTCTCTAACTCGATCTTCAAAGAACCAAAAATTTTATTCGAATTAGAG
AGATTCGAATAATAGAAGTCGAAGTAGAGAGAGCTGGTTGTATATTATTC
GACTTACTCATTTTTTAAATTTCATCTCGTTTGTAGCTGTGTATGGCTTT
TAAAGGTTTTGTTTTTACCTAAATGTTCCCGTTTCTTATCAGACACATAT
TTCATATCAGGACAGTGTCTGCCTATTGTTATGTTATGCTGATATAAGCG
CAAAAATGTTATTCTTAATCCTTTTTCTGGCCAATCTTGCTCCACATTCG
TGTCAATCAGATGTGTAAAAGCTTGTGAATTAAAATTGATGAGTAAGCAA
ACGATTTCACTCTTAAGGGCTACATACACTACACAATATATTGATGAGCA
ATTTTTGACAATATGGTTTTCGGACCGTGATGTACGAAGTAAATAGCAGG
TATTTTGTTATAAAAAGGAATTTTCTTTCGGTAAACAATCCTCCTATATT
GTTGGAAAATTTCAAATCAAGCTGACAATATATTACGGACACCGTTTCAA
TATATTGTGTAGTGTATGTAGTCCTTTATTTAAAAACAAAACTTCGAGTA
TCGTCGTCTATACACCAATAACTCTGTCGTGTCGCGAGTGCAGGGTTAGC
AGTGTCTGCTAAGCGTGGTAATTTCCCTATCCTAGGGTAGGTATCTATCC
AGGGATAGGGCCCAATCCGGATGATTCGGAGGGTTCATTTCTCTTCTTCT
TCTCATATAAAATTTCATCTCGTTTGGAGCTGTGGATCGCTTTTAAATAT
CATATATTTTCTTCCATCCAGGGAACGTTAAAAGGATTCGATCAAGCGGT
CAACCTGATATTGGATGAGAGTCATGAGAGAGTTTTTTCACCGGAGAGTG
GTGTCCAACAAGTTGTGCTTGGATTATACATTGTGAGAGGAGACAACGTG
TAAGTTAAGTTGACGTTCTCAAATTCGACGTTTTACTACCTTATCGGGGA
AAAGTTCGTCGGGGAAAATTTTCGTCGGGGAAAAATTCGTCACTTGCTGG
TAGTAAACGCATTAAAGCCGGGGGAAATTTTCGTCACTTGTCCAAAATTT
CGTCACTTTTCCCCGACGAAGTTTTCCCCGATAAGGTATTCGATACGCTC
CCGTGTACATTTAACTTTTTTGGAATAGGAAAGGTTTTACAATGTACAAA
GGATACGGTCGTTTTACACAAGATTTCACTTGCTGCACGAAGATTCCACT
GCCAATTTTCTAGGGGAAAAGACCAGGGCTCCAGGTCTCCTAATCTTCTA
ATTTACGTTCCGATTAATACAAAGTTGTGCTTGGATTGTACATCGTGAGA
TGATGCATTCCCAGCTGGCACACAACATTGTTTCAACGTTTATCTAACGT
TCACAACGTCCATTTAACGTTAGATTAACGTTAAAACAACGTTGTGTGCC
AACTGCTTTAAAGCCAATCTTCAAGCTCTCATACAATCTTGGACAAATAC
CGGGTCATACCAAAGATTTCCAAAATGGTACTTGATGCCTCAAGAGACGG
ATCAATGGTAAATGGAGCAATCCAGGGAGAAAGAGTGGCGCCCTCCCCTA
CTTTCGGGTAGATAGCTATCGAAAGAGGAGCCTTCAGGTCGCCTCCGACT
TCGGTCGCGGACAGACTTACTTGTAAGATCATCAATATAAAGCAAAGGAT
TCTGGTACAGCCTTTTTCTAGCCGTTCTTCAAGAATCCTGTTTCGTATAG
ATATAAAATCGAACGCGAAGGAGACAGGATATGGTCTATATCTCACCTCC
ACGCGATGTCTTTTGACCAATGAAATCGTTAGAATCTTACTGATGCGGGA
TAAAAGGCATTCTTCAAGCGTTTCTTGTCTTCTTTCTTTTGCAGAGCTGT
GATTGGTGAAATTGATGACGAGATTGATTCTGGAATCGAAATGCAGAGTG
TCAAAGCTGAACCGTTCAATCCAGTTGTTTATTGAGAAAGATTTATTTAT
TCATTACATAGCGGTTTTTATGTTTGACCGCGGTCATGCCATCTACATGA
ATTGGGAAGTGATGCAGCTAATATTTTGTTTTCATTAATGATTAAAAGAC
CAAGACGTCGTGATCGTAAGGTTTATTTATTAGACTTTTAATGGCTGGCA
AAAGAGAGGTAAACATTCTGCCGGCATTTTAATAACTTAAAAATATGAAA
ATGTGACGTTGGAGCTATTTGTATATATTGTTATGGCGGTTAAATGGATG
CTGAAGAGACCTTTGCAATGTAGCATTGGAATTTTTTGGTGGATATTGCT
TTACAGGTCTGAATCGAGAGAATGTAGCATTAAAGGCTCTGATGATTACT
CTTAACTGATTGAATGAAACTTTGAAAATGAAAGAGAAAAACTTATTGAT
CGCTGGTGTCGACTTTCATTGCAAAAACAATGAGCAAACAAATTACAAGC
TTGGAAATATAGTACACTATTTTAGGAGACTGCTCATCTAACGTTTCCAA
ACCATCTAAAAAGAACGACAAACCCTAACCCTAACTCTAACTATCAAACA
ACGACATATTTCACCGCCCACAACCCCCCGACCGAAAGTGACTGTACCAC
CCATACGGATTCATTCCTCTTTATTTGTCACAGGAATTAACTACATGTGG
TTTAAAAGAACGCAAAATTACGGAACTAGCTGGAGTTTTTACAAGTTCTT
TCTTGATTTGGTTGGTCGTTAACCAGTAATACAACAATTTTGTTACTTTT
TCTAAAGAATGCGTCATCTCTATCACTTCAAATGACCAATTACTGAAGTA
TCTTATAAAAACTCCAGAACATCCCAAAATTACGCATGCGTATAAGTCTC
TATTTGGATGAGCTGGAAACATTAGATGAACTAACTCCTATAGAGGTGTT
TGTTGTTTTGATGTCCTTTCTTAATCCAGGATTGACCCTTTGAGAGTTAT
TAGAGCTCTTGTGTCAAGCTAGTATCATTAAGACCGTAGACGGAAATCCG
CCAAGTTAAGATTTTTCATTTGCTATTCCAATAGACCTTATCAGAGTTTT
TGATTTTTCTAAAAAAGCAATGTATTGTGGGATTGTTTCGGGAGTATTAC
AATAGAAATCTCTTAGGAATTCCTCGAGGGAATTCTATTGTAATACTCCC
GAAACAATCCCACATATGCTTCGCTGTTTTAGAAAAATCAAAAACTTCGA
TAAGATCTATTGTAAGACTTGGAAGAACGAAATATCTTGGAATTTTTTCT
AGAATTTTGAACTTCCCTTCCAGACTTCTCTCTCCTTAGATAGGTCTCCT
TGAAAAGTGACGAAACATAAAAAAGGAAAATCCGAGAGAAATGACAATAG
ACAAATCTCAATCCCTTCATTAGCTTAACCTATAATTCTATGACGATTAT
CTGTCTTAGGGTAAGAATTGAATTGAATCTTTCAAGAGTTTTTAGATTCA
AATAAAATTCAAATCACCGAAACTCTGATATAAAAAGTCCTTTTCAGACA
GGCATATAGTCTTTACATGTTTGATATATCATGATTATTTTAACAGATTA
GTAGTAGACATGTGTTTTTATAAATTTTTAAAGTTAACAAAAAGTTCTAT
TAAAAAAAAAGAATTTCGAAGAGTTCCAGACTGAAATATTTTCTATACAT
TGTTATTATATTCTCTGAAGTGGAAAGCAGACTTGGAATAAAGTTTGAAA
TTGCCTGTTTGAATAATTTTAAAGTGCATTTTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00066239-exon-scaffold_451-1575043694:791764..791866 | TCONS_00066239-exon-scaffold_451-1575043694:791764..791866 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1575043694:791110..791150 | TCONS_00066239-exon-scaffold_451-1575043694:791110..791150 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1575043694:788818..788945 | TCONS_00066239-exon-scaffold_451-1575043694:788818..788945 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1575043694:786030..787872 | TCONS_00066239-exon-scaffold_451-1575043694:786030..787872 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1510915933:791764..791866 | TCONS_00066239-exon-scaffold_451-1510915933:791764..791866 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1510915933:791110..791150 | TCONS_00066239-exon-scaffold_451-1510915933:791110..791150 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1510915933:788818..788945 | TCONS_00066239-exon-scaffold_451-1510915933:788818..788945 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1510915933:786030..787872 | TCONS_00066239-exon-scaffold_451-1510915933:786030..787872 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1491911889:791764..791866 | TCONS_00066239-exon-scaffold_451-1491911889:791764..791866 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1491911889:791110..791150 | TCONS_00066239-exon-scaffold_451-1491911889:791110..791150 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1491911889:788818..788945 | TCONS_00066239-exon-scaffold_451-1491911889:788818..788945 | Clytia hemisphaerica | exon |
| TCONS_00066239-exon-scaffold_451-1491911889:786030..787872 | TCONS_00066239-exon-scaffold_451-1491911889:786030..787872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:786030..791866 - |
Blast
BLAST of TCONS_00066239 vs. Swiss-Prot (Human)
Match: LSM8 (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3) HSP 1 Score: 124.02 bits (310), Expect = 6.002e-33 Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1
Query: 73 MATTLESYTGHTVAVITQDGRMIVGTLKGFDQAVNLILDESHERVFSPESGVQQVVLGLYIVRGDNVAVXXXXXXXXXXXXXMQSVKAEPFNPVVY 360
M + LE+Y TVAVIT DGRMIVGTLKGFDQ +NLILDESHERVFS GV+QVVLGLYIVRGDNVAVIGEID+E DS +++ +++AEP N V +
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
The following BLAST results are available for this feature:
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