TCONS_00066273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066273
Unique NameTCONS_00066273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066273 ID=TCONS_00066273|Name=TCONS_00066273|organism=Clytia hemisphaerica|type=transcript|length=2087bp
ATTGAAAAGTTTCAGTATCTAAAAAGTTATTTAATCGATGAAGCCGCTGA
CGCTATAAAAGGACTTAGACTTTCTGCTgaaaattatgataaagcgaGAG
AGATGCTGGAGCAGAGATTTGGCGATACACAAGTTTTAATTTCGCATCAT
ATGTCGCAGCTTTTAGATATACCACCTTGTGCAAATGTAGAAAACTTAAA
AGAACTGCGAAAACTTCATGATTCAATCGAATTTGCTATTCGAAATCTTG
AAACTTTGGGCTTAGATCAAAAGGAATATGGTCCAATGCTATCACCTATT
TTGCTGAACAAGATTCCTGTAGAAATCAAACTGATCGTTTCGAGAACTTT
GGAAAAGAATCAAAAATGGGACATTTCCAAAATAATGAACACTTTTTTGA
CAGAACTAGAAGCGAGAGAGAAAGTCAGCACCTCATATACGGAGGAGGGT
GCATACGCGTGTTCTGGTGCATCCCTACATGTTAGTTCAAAGTTCGAAAA
CAAGCAGAAACGAGAATTTCATAGAAAGGAGGATAATCAAAAActgattt
gtattttttgtcgGAGAGGTCACAGATCTAGAGATTGTGATATTATAACG
AAACCGGAAATTCGTAAAactattttacaaaaggagaaCCGTTGCTTTAT
TTGTATGAAAATTGGACATCGtgctcaaaaatgttcaaataaaatgaaat
gttttaatTGTAAAGGCAGACACCACGTTGCTGTTTGCACATACAAAAGT
GATTCTTCTCAAAGTAATTCACCAAATGCAAACTCCTCCCATcaaaaaga
ggagaagaaagaagagaaagatcAACACCCTATTGTTCCAGTCACAACAA
GTAACTTTGTCGATGTAAATAAAGTGAATTCGGTTCTTTTGAAAACTGCT
CGAGCGGAAATCTTTACAATAGatgaaaaacattcaaaaaacgtTAGACT
TTTATTTGATGATGGTTCAATGTCCAGTTACGTAACTAAAGAATTGTGTA
AAGAACTTTGTTTAAAACCAATTGCAAAACAAAAGGTTGCGATCAAAACC
TTtggtcaaaacaaaacaatcaaagAGCTCGATGTTGTTGAATTGTGTAT
CAAGTCGAAAGATAATAGAGAAAGTTTATACATTGAAGCTTTCGTGAACG
ACATTTGTTTACCGATTGagaatcaaaatatttctttagcAAAGGAACAG
TATGAACCTTTGAACTTCGTTGATCTCGCTGATAGTAATCCACGTAATTT
ACCCATGACAATAGACATTCTTATCGGTTCAGCGCACTATTGGAACTTCA
TTGGTAACAAACAGATCAGATGCCCTGATGGTCCTACTGCTTTGGAGTCA
AAACTCGGTTACGTTTTGAGTGGTCCAATCGCCTCGAATGATACATCGCC
GGCAACCTCGAATTTATTCGTTACTACACATGCATTGAAAGTCGCTTCAG
AATTCGTTGACCCAAGACATGAGATTCGAGATCACCTACACCAAATCTAT
GATACCAATAATGAAATTCCATCTGACCCAGAcgttttaaaaacttttga
tgaaactaCGAAATTTCGTGACGGTCGTTATGAAGTTCAATTGCCTTTCA
AATCTGAATCAATCGATACGTTGGGAGACAACTACAACACTTGCAGAAAA
CGTTTGAGAAATCTAACCAAAACttttaagaacaatcctgaTTTACTTCA
AGAATACGCGTCAATTCTTGAAAACCAAGAGTCGTTAGGTGTTATCGAAC
GTATCGAACCTAATGATTACAAAGTCGGAGAAACTCATTACTTACCACAC
CGTGCAGTTGTTCATGAACAGAGAGAGACTACCAAAGTTCGTGTCGTTTT
CGATGCCAGTTGTAAGAGTGGAAAGGATGCTCCATCATTAAACGACGTTT
TAGAATCTGGTCCTTCGCTGACACCATTGCTCCAAGACGTGCTTATGCGT
TTTCGTTCGTTCAATTATCTAGTCGTTGCTGACATTGAAAAAGCATTCCT
GAATATCGCACTTGCTAGAGAGCATCAAGACTACGTTCGGTTCCTGTGGT
TTCGAGATATTTCGAATATTAACTTTGAACATTTTGA
Run BLAST on NCBI

protein sequence of TCONS_00066273-protein

>TCONS_00066273-protein ID=TCONS_00066273-protein|Name=TCONS_00066273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=695bp
IEKFQYLKSYLIDEAADAIKGLRLSAENYDKAREMLEQRFGDTQVLISHH
MSQLLDIPPCANVENLKELRKLHDSIEFAIRNLETLGLDQKEYGPMLSPI
LLNKIPVEIKLIVSRTLEKNQKWDISKIMNTFLTELEAREKVSTSYTEEG
AYACSGASLHVSSKFENKQKREFHRKEDNQKLICIFCRRGHRSRDCDIIT
KPEIRKTILQKENRCFICMKIGHRAQKCSNKMKCFNCKGRHHVAVCTYKS
DSSQSNSPNANSSHQKEEKKEEKDQHPIVPVTTSNFVDVNKVNSVLLKTA
RAEIFTIDEKHSKNVRLLFDDGSMSSYVTKELCKELCLKPIAKQKVAIKT
FGQNKTIKELDVVELCIKSKDNRESLYIEAFVNDICLPIENQNISLAKEQ
YEPLNFVDLADSNPRNLPMTIDILIGSAHYWNFIGNKQIRCPDGPTALES
KLGYVLSGPIASNDTSPATSNLFVTTHALKVASEFVDPRHEIRDHLHQIY
DTNNEIPSDPDVLKTFDETTKFRDGRYEVQLPFKSESIDTLGDNYNTCRK
RLRNLTKTFKNNPDLLQEYASILENQESLGVIERIEPNDYKVGETHYLPH
RAVVHEQRETTKVRVVFDASCKSGKDAPSLNDVLESGPSLTPLLQDVLMR
FRSFNYLVVADIEKAFLNIALAREHQDYVRFLWFRDISNINFEHF
Run BLAST on NCBI

transcript from alignment at scaffold_451:366492..368578

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066273 ID=TCONS_00066273|Name=TCONS_00066273|organism=Clytia hemisphaerica|type=transcript|length=2087bp|location=Sequence derived from alignment at scaffold_451:366492..368578 (Clytia hemisphaerica)
TCAAAATGTTCAAAGTTAATATTCGAAATATCTCGAAACCACAGGAACCG AACGTAGTCTTGATGCTCTCTAGCAAGTGCGATATTCAGGAATGCTTTTT CAATGTCAGCAACGACTAGATAATTGAACGAACGAAAACGCATAAGCACG TCTTGGAGCAATGGTGTCAGCGAAGGACCAGATTCTAAAACGTCGTTTAA TGATGGAGCATCCTTTCCACTCTTACAACTGGCATCGAAAACGACACGAA CTTTGGTAGTCTCTCTCTGTTCATGAACAACTGCACGGTGTGGTAAGTAA TGAGTTTCTCCGACTTTGTAATCATTAGGTTCGATACGTTCGATAACACC TAACGACTCTTGGTTTTCAAGAATTGACGCGTATTCTTGAAGTAAAtcag gattgttcttaaaaGTTTTGGTTAGATTTCTCAAACGTTTTCTGCAAGTG TTGTAGTTGTCTCCCAACGTATCGATTGATTCAGATTTGAAAGGCAATTG AACTTCATAACGACCGTCACGAAATTTCGtagtttcatcaaaagttttta aaacgTCTGGGTCAGATGGAATTTCATTATTGGTATCATAGATTTGGTGT AGGTGATCTCGAATCTCATGTCTTGGGTCAACGAATTCTGAAGCGACTTT CAATGCATGTGTAGTAACGAATAAATTCGAGGTTGCCGGCGATGTATCAT TCGAGGCGATTGGACCACTCAAAACGTAACCGAGTTTTGACTCCAAAGCA GTAGGACCATCAGGGCATCTGATCTGTTTGTTACCAATGAAGTTCCAATA GTGCGCTGAACCGATAAGAATGTCTATTGTCATGGGTAAATTACGTGGAT TACTATCAGCGAGATCAACGAAGTTCAAAGGTTCATACTGTTCCTTTgct aaagaaatattttgattctCAATCGGTAAACAAATGTCGTTCACGAAAGC TTCAATGTATAAACTTTCTCTATTATCTTTCGACTTGATACACAATTCAA CAACATCGAGCTctttgattgttttgttttgaccaAAGGTTTTGATCGCA ACCTTTTGTTTTGCAATTGGTTTTAAACAAAGTTCTTTACACAATTCTTT AGTTACGTAACTGGACATTGAACCATCATCAAATAAAAGTCTAacgtttt ttgaatgtttttcatCTATTGTAAAGATTTCCGCTCGAGCAGTTTTCAAA AGAACCGAATTCACTTTATTTACATCGACAAAGTTACTTGTTGTGACTGG AACAATAGGGTGTTgatctttctcttctttcttctcctctttttgATGGG AGGAGTTTGCATTTGGTGAATTACTTTGAGAAGAATCACTTTTGTATGTG CAAACAGCAACGTGGTGTCTGCCTTTACAattaaaacatttcattttatt tgaacatttttgagcaCGATGTCCAATTTTCATACAAATAAAGCAACGGt tctccttttgtaaaatagtTTTACGAATTTCCGGTTTCGTTATAATATCA CAATCTCTAGATCTGTGACCTCTCcgacaaaaaatacaaatcagTTTTTG ATTATCCTCCTTTCTATGAAATTCTCGTTTCTGCTTGTTTTCGAACTTTG AACTAACATGTAGGGATGCACCAGAACACGCGTATGCACCCTCCTCCGTA TATGAGGTGCTGACTTTCTCTCTCGCTTCTAGTTCTGTCAAAAAAGTGTT CATTATTTTGGAAATGTCCCATTTTTGATTCTTTTCCAAAGTTCTCGAAA CGATCAGTTTGATTTCTACAGGAATCTTGTTCAGCAAAATAGGTGATAGC ATTGGACCATATTCCTTTTGATCTAAGCCCAAAGTTTCAAGATTTCGAAT AGCAAATTCGATTGAATCATGAAGTTTTCGCAGTTCTTTTAAGTTTTCTA CATTTGCACAAGGTGGTATATCTAAAAGCTGCGACATATGATGCGAAATT AAAACTTGTGTATCGCCAAATCTCTGCTCCAGCATCTCTCtcgctttatc ataattttcAGCAGAAAGTCTAAGTCCTTTTATAGCGTCAGCGGCTTCAT CGATTAAATAACTTTTTAGATACTGAAACTTTTCAAT

Coding sequence (CDS) from alignment at scaffold_451:366492..368578

>TCONS_00066273 ID=TCONS_00066273|Name=TCONS_00066273|organism=Clytia hemisphaerica|type=CDS|length=2085bp|location=Sequence derived from alignment at scaffold_451:366492..368578 (Clytia hemisphaerica)
AAAATGTTCAAAGTTAATATTCGAAATATCTCGAAACCACAGGAACCGAA
CGTAGTCTTGATGCTCTCTAGCAAGTGCGATATTCAGGAATGCTTTTTCA
ATGTCAGCAACGACTAGATAATTGAACGAACGAAAACGCATAAGCACGTC
TTGGAGCAATGGTGTCAGCGAAGGACCAGATTCTAAAACGTCGTTTAATG
ATGGAGCATCCTTTCCACTCTTACAACTGGCATCGAAAACGACACGAACT
TTGGTAGTCTCTCTCTGTTCATGAACAACTGCACGGTGTGGTAAGTAATG
AGTTTCTCCGACTTTGTAATCATTAGGTTCGATACGTTCGATAACACCTA
ACGACTCTTGGTTTTCAAGAATTGACGCGTATTCTTGAAGTAAAtcagga
ttgttcttaaaaGTTTTGGTTAGATTTCTCAAACGTTTTCTGCAAGTGTT
GTAGTTGTCTCCCAACGTATCGATTGATTCAGATTTGAAAGGCAATTGAA
CTTCATAACGACCGTCACGAAATTTCGtagtttcatcaaaagtttttaaa
acgTCTGGGTCAGATGGAATTTCATTATTGGTATCATAGATTTGGTGTAG
GTGATCTCGAATCTCATGTCTTGGGTCAACGAATTCTGAAGCGACTTTCA
ATGCATGTGTAGTAACGAATAAATTCGAGGTTGCCGGCGATGTATCATTC
GAGGCGATTGGACCACTCAAAACGTAACCGAGTTTTGACTCCAAAGCAGT
AGGACCATCAGGGCATCTGATCTGTTTGTTACCAATGAAGTTCCAATAGT
GCGCTGAACCGATAAGAATGTCTATTGTCATGGGTAAATTACGTGGATTA
CTATCAGCGAGATCAACGAAGTTCAAAGGTTCATACTGTTCCTTTgctaa
agaaatattttgattctCAATCGGTAAACAAATGTCGTTCACGAAAGCTT
CAATGTATAAACTTTCTCTATTATCTTTCGACTTGATACACAATTCAACA
ACATCGAGCTctttgattgttttgttttgaccaAAGGTTTTGATCGCAAC
CTTTTGTTTTGCAATTGGTTTTAAACAAAGTTCTTTACACAATTCTTTAG
TTACGTAACTGGACATTGAACCATCATCAAATAAAAGTCTAacgtttttt
gaatgtttttcatCTATTGTAAAGATTTCCGCTCGAGCAGTTTTCAAAAG
AACCGAATTCACTTTATTTACATCGACAAAGTTACTTGTTGTGACTGGAA
CAATAGGGTGTTgatctttctcttctttcttctcctctttttgATGGGAG
GAGTTTGCATTTGGTGAATTACTTTGAGAAGAATCACTTTTGTATGTGCA
AACAGCAACGTGGTGTCTGCCTTTACAattaaaacatttcattttatttg
aacatttttgagcaCGATGTCCAATTTTCATACAAATAAAGCAACGGttc
tccttttgtaaaatagtTTTACGAATTTCCGGTTTCGTTATAATATCACA
ATCTCTAGATCTGTGACCTCTCcgacaaaaaatacaaatcagTTTTTGAT
TATCCTCCTTTCTATGAAATTCTCGTTTCTGCTTGTTTTCGAACTTTGAA
CTAACATGTAGGGATGCACCAGAACACGCGTATGCACCCTCCTCCGTATA
TGAGGTGCTGACTTTCTCTCTCGCTTCTAGTTCTGTCAAAAAAGTGTTCA
TTATTTTGGAAATGTCCCATTTTTGATTCTTTTCCAAAGTTCTCGAAACG
ATCAGTTTGATTTCTACAGGAATCTTGTTCAGCAAAATAGGTGATAGCAT
TGGACCATATTCCTTTTGATCTAAGCCCAAAGTTTCAAGATTTCGAATAG
CAAATTCGATTGAATCATGAAGTTTTCGCAGTTCTTTTAAGTTTTCTACA
TTTGCACAAGGTGGTATATCTAAAAGCTGCGACATATGATGCGAAATTAA
AACTTGTGTATCGCCAAATCTCTGCTCCAGCATCTCTCtcgctttatcat
aattttcAGCAGAAAGTCTAAGTCCTTTTATAGCGTCAGCGGCTTCATCG
ATTAAATAACTTTTTAGATACTGAAACTTTTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041475XLOC_041475Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066273-exon-scaffold_451-1491911889:366492..368578TCONS_00066273-exon-scaffold_451-1491911889:366492..368578Clytia hemisphaericaexon
TCONS_00066273-exon-scaffold_451-1510915933:366492..368578TCONS_00066273-exon-scaffold_451-1510915933:366492..368578Clytia hemisphaericaexon
TCONS_00066273-exon-scaffold_451-1575043694:366492..368578TCONS_00066273-exon-scaffold_451-1575043694:366492..368578Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066273-proteinTCONS_00066273-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:366492..368578 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.235983 0.264569 0.410959 0.703923 2.12897 1.86586 0.270641 0.323743 0.109073 0.491942 0.120608 0.193927 0.479826 0.671127 0.203442 0.191932 0.17564 0.267039 0.0200818 0.0499212 0.326957 0.182946 0.466235 0.507368 0.851048 1.39566 0.251735 0.252933 0.899773 0.70677
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005312DUF1759
IPR021109Peptidase_aspartic_dom
IPR008737Peptidase_asp_put
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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