TCONS_00066277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066277
Unique NameTCONS_00066277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066277 ID=TCONS_00066277|Name=TCONS_00066277|organism=Clytia hemisphaerica|type=transcript|length=575bp
cttgagttttcttcaacTGGATTGGAAAACCAGCAGTTGTAATGTCCTTT
TTAACTGTCTTAGGTCCAGCTGGAGCAACATTTTTCTTAACGCGAAGCGT
CTTATCACCAGTTACGTCATCCGTAGCGTGACCAACCTTCGCATTCTTTA
ATTTCAAAGTGTTCAAATCTTTCCTTTGCATATTCGATTGTTCAGAATCT
AAAATGTTACTTTTGAACGATTCCAGCTCTTTCTCTGGCTCGATCCTTTC
TTTAACAATGTTGACATTTTCCTCTGGGATCACTGGCACCTCAAGAATCT
CACTCGCCGTATCGTTAACTTCATCAACCGGTTCACAAACTATTTGACGT
GTTTCGGAGTCAGTCTTTACAGTTTCTATTACAGGGTCTTGAACCAGAAC
GTCAAGAGATTCCTTATTATCCACAATGGCGGTTTTGGAAGAATTTTTGC
TCGGTTTCGTTTTCTTTACTTTATCAATCTCGTCACTCTTCGCTTTCTTc
gcttttttcttcttctttttgacgtcgCCCGACTCTTCTCCTACCACGGC
ACTTTTTAcctttttcgatttcttt
Run BLAST on NCBI

protein sequence of TCONS_00066277-protein

>TCONS_00066277-protein ID=TCONS_00066277-protein|Name=TCONS_00066277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
KKSKKVKSAVVGEESGDVKKKKKKAKKAKSDEIDKVKKTKPSKNSSKTAI
VDNKESLDVLVQDPVIETVKTDSETRQIVCEPVDEVNDTASEILEVPVIP
EENVNIVKERIEPEKELESFKSNILDSEQSNMQRKDLNTLKLKNAKVGHA
TDDVTGDKTLRVKKNVAPAGPKTVKKDITTAGFPIQLKKTQ
Run BLAST on NCBI

transcript from alignment at scaffold_451:419448..420022

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066277 ID=TCONS_00066277|Name=TCONS_00066277|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at scaffold_451:419448..420022 (Clytia hemisphaerica)
aaagaaatcgaaaaaggTAAAAAGTGCCGTGGTAGGAGAAGAGTCGGGcg
acgtcaaaaagaagaagaaaaaagcgAAGAAAGCGAAGAGTGACGAGATT
GATAAAGTAAAGAAAACGAAACCGAGCAAAAATTCTTCCAAAACCGCCAT
TGTGGATAATAAGGAATCTCTTGACGTTCTGGTTCAAGACCCTGTAATAG
AAACTGTAAAGACTGACTCCGAAACACGTCAAATAGTTTGTGAACCGGTT
GATGAAGTTAACGATACGGCGAGTGAGATTCTTGAGGTGCCAGTGATCCC
AGAGGAAAATGTCAACATTGTTAAAGAAAGGATCGAGCCAGAGAAAGAGC
TGGAATCGTTCAAAAGTAACATTTTAGATTCTGAACAATCGAATATGCAA
AGGAAAGATTTGAACACTTTGAAATTAAAGAATGCGAAGGTTGGTCACGC
TACGGATGACGTAACTGGTGATAAGACGCTTCGCGTTAAGAAAAATGTTG
CTCCAGCTGGACCTAAGACAGTTAAAAAGGACATTACAACTGCTGGTTTT
CCAATCCAgttgaagaaaactcaag

Coding sequence (CDS) from alignment at scaffold_451:419448..420022

>TCONS_00066277 ID=TCONS_00066277|Name=TCONS_00066277|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_451:419448..420022 (Clytia hemisphaerica)
aagaaatcgaaaaaggTAAAAAGTGCCGTGGTAGGAGAAGAGTCGGGcga
cgtcaaaaagaagaagaaaaaagcgAAGAAAGCGAAGAGTGACGAGATTG
ATAAAGTAAAGAAAACGAAACCGAGCAAAAATTCTTCCAAAACCGCCATT
GTGGATAATAAGGAATCTCTTGACGTTCTGGTTCAAGACCCTGTAATAGA
AACTGTAAAGACTGACTCCGAAACACGTCAAATAGTTTGTGAACCGGTTG
ATGAAGTTAACGATACGGCGAGTGAGATTCTTGAGGTGCCAGTGATCCCA
GAGGAAAATGTCAACATTGTTAAAGAAAGGATCGAGCCAGAGAAAGAGCT
GGAATCGTTCAAAAGTAACATTTTAGATTCTGAACAATCGAATATGCAAA
GGAAAGATTTGAACACTTTGAAATTAAAGAATGCGAAGGTTGGTCACGCT
ACGGATGACGTAACTGGTGATAAGACGCTTCGCGTTAAGAAAAATGTTGC
TCCAGCTGGACCTAAGACAGTTAAAAAGGACATTACAACTGCTGGTTTTC
CAATCCAgttgaagaaaactcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041479XLOC_041479Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066277-proteinTCONS_00066277-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066277-exon-scaffold_451-1491911889:419448..420022TCONS_00066277-exon-scaffold_451-1491911889:419448..420022Clytia hemisphaericaexon
TCONS_00066277-exon-scaffold_451-1510915933:419448..420022TCONS_00066277-exon-scaffold_451-1510915933:419448..420022Clytia hemisphaericaexon
TCONS_00066277-exon-scaffold_451-1575043694:419448..420022TCONS_00066277-exon-scaffold_451-1575043694:419448..420022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:419448..420022 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.387735	0.189051	0.32926	0	3.66018	3.5121	2.74172	3.50013	1.47032	1.01179	1.17848	1.93672	2.77211	3.68226	0.110084	0	2.11027	1.9392	1.85477	5.28351	3.28024	3.15425	1.44485	3.33447	5.72404	10.9602	0.531661	0.425553	0	0.109616
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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