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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066280 ID=TCONS_00066280|Name=TCONS_00066280|organism=Clytia hemisphaerica|type=transcript|length=1148bp
ctcGAAAAGATCGAAGTTTGGTtaaatttgtcccaataaggataaaaaaa
ttcacaaaattttctttttctcctcctttttagtcccgctaagggtccga
ggttTGGAAGGCTGAAGCTcttaaaggagcgggccaatttcccatcagaG
AGGCCTTTGATGTGCTGCATCTCCAGTCAGGTTCATCTACAATTACGTGT
AaacattaaaatatttcaattggACCCTCTAATCCCCGGAAACGAAGGCT
GGGGTCCAGGCTTCTCGCTACAAAATCCTTGACGCATTCTTTAATCtcat
tccgtaatctaaaccttccggatattgcaaaattttcccgaccttcagag
ctttggCATGTTAGATGAGAATTTCTGCATCTTGGTACCAGTATagtgtt
ttctatttttttagatGTTATTAAAAGTTGAGTATGTTGAGAAAGCTGGT
TTCAAGGCTTTAATGGCAGCGTGTGATATCAAAGCCGGAACGAAGCTTAT
TGACTTATCGGGAGATACGGAAATTCTCCGGGAATCTGCCTGGAATACTA
TACATATTACTGAGAAAGAACATTTAGTGATCACAACAAAACTTTTGTAT
ACAAATCACTGTTGTAGAACTCCTAATGCTGAGTTTGAGTTCAATACGCA
ACCGTGGCTGTTGGTAGCTACGCGAGACATACGTAAAAACGAATGGGTTA
CGTACGATTACGCAACAACGGAATACGTAAGCGGAAGAGCGTTTGATTGT
CAATGTAGCAGCGGAAAGTGTCGTGGAAGTTTTAATGGTTTTAGCGCCCT
ATCAGATGATGAGAAACGTGACATGAttgagaagaagaaaatttcaccTG
TCGTTTTGGCGCTCCATCTTAAAGAAAAAGCGTGACCGCCATTTTAATTG
GAAATGCGTAACTGGACTCTCATGCCGACATTTTTTCTTGTCTTTAGAGT
TGGAAATTATTATCATAGTgattataaataaataattgatTGTTTGAATT
AGCAACGTTACGGTAGTAGTGCAAACACAAACGTTTTGGCACGTTCATAC
CAATGTTAATTTGCTATAAGATTCTATAATCTTTTATTTGTATATAATGG
AATGTACGAATTTTTAAAGAATTGCAGAGCTAAAATTTCACCCCTAGA Run BLAST on NCBI protein sequence of TCONS_00066280-protein >TCONS_00066280-protein ID=TCONS_00066280-protein|Name=TCONS_00066280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MLLKVEYVEKAGFKALMAACDIKAGTKLIDLSGDTEILRESAWNTIHITE
KEHLVITTKLLYTNHCCRTPNAEFEFNTQPWLLVATRDIRKNEWVTYDYA
TTEYVSGRAFDCQCSSGKCRGSFNGFSALSDDEKRDMIEKKKISPVVLAL
HLKEKA Run BLAST on NCBI transcript from alignment at scaffold_451:522808..523955 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066280 ID=TCONS_00066280|Name=TCONS_00066280|organism=Clytia hemisphaerica|type=transcript|length=1148bp|location=Sequence derived from alignment at scaffold_451:522808..523955 (Clytia hemisphaerica)
TCTAGGGGTGAAATTTTAGCTCTGCAATTCTTTAAAAATTCGTACATTCC
ATTATATACAAATAAAAGATTATAGAATCTTATAGCAAATTAACATTGGT
ATGAACGTGCCAAAACGTTTGTGTTTGCACTACTACCGTAACGTTGCTAA
TTCAAACAatcaattatttatttataatcACTATGATAATAATTTCCAAC
TCTAAAGACAAGAAAAAATGTCGGCATGAGAGTCCAGTTACGCATTTCCA
ATTAAAATGGCGGTCACGCTTTTTCTTTAAGATGGAGCGCCAAAACGACA
ggtgaaattttcttcttctcaaTCATGTCACGTTTCTCATCATCTGATAG
GGCGCTAAAACCATTAAAACTTCCACGACACTTTCCGCTGCTACATTGAC
AATCAAACGCTCTTCCGCTTACGTATTCCGTTGTTGCGTAATCGTACGTA
ACCCATTCGTTTTTACGTATGTCTCGCGTAGCTACCAACAGCCACGGTTG
CGTATTGAACTCAAACTCAGCATTAGGAGTTCTACAACAGTGATTTGTAT
ACAAAAGTTTTGTTGTGATCACTAAATGTTCTTTCTCAGTAATATGTATA
GTATTCCAGGCAGATTCCCGGAGAATTTCCGTATCTCCCGATAAGTCAAT
AAGCTTCGTTCCGGCTTTGATATCACACGCTGCCATTAAAGCCTTGAAAC
CAGCTTTCTCAACATACTCAACTTTTAATAACatctaaaaaaatagaaaa
cactATACTGGTACCAAGATGCAGAAATTCTCATCTAACATGccaaagct
ctgaaggtcgggaaaattttgcaatatccggaaggtttagattacggaat
gaGATTAAAGAATGCGTCAAGGATTTTGTAGCGAGAAGCCTGGACCCCAG
CCTTCGTTTCCGGGGATTAGAGGGTccaattgaaatattttaatgttTAC
ACGTAATTGTAGATGAACCTGACTGGAGATGCAGCACATCAAAGGCCTCt
ctgatgggaaattggcccgctcctttaagAGCTTCAGCCTTCCAaacctc
ggacccttagcgggactaaaaaggaggagaaaaagaaaattttgtgaatt
tttttatccttattgggacaaatttaACCAAACTTCGATCTTTTCgag Coding sequence (CDS) from alignment at scaffold_451:522808..523955 >TCONS_00066280 ID=TCONS_00066280|Name=TCONS_00066280|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_451:522808..523955 (Clytia hemisphaerica)
TCACGCTTTTTCTTTAAGATGGAGCGCCAAAACGACAggtgaaattttct
tcttctcaaTCATGTCACGTTTCTCATCATCTGATAGGGCGCTAAAACCA
TTAAAACTTCCACGACACTTTCCGCTGCTACATTGACAATCAAACGCTCT
TCCGCTTACGTATTCCGTTGTTGCGTAATCGTACGTAACCCATTCGTTTT
TACGTATGTCTCGCGTAGCTACCAACAGCCACGGTTGCGTATTGAACTCA
AACTCAGCATTAGGAGTTCTACAACAGTGATTTGTATACAAAAGTTTTGT
TGTGATCACTAAATGTTCTTTCTCAGTAATATGTATAGTATTCCAGGCAG
ATTCCCGGAGAATTTCCGTATCTCCCGATAAGTCAATAAGCTTCGTTCCG
GCTTTGATATCACACGCTGCCATTAAAGCCTTGAAACCAGCTTTCTCAAC
ATACTCAACTTTTAATAACat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066280-exon-scaffold_451-1491911889:522808..523955 | TCONS_00066280-exon-scaffold_451-1491911889:522808..523955 | Clytia hemisphaerica | exon |
| TCONS_00066280-exon-scaffold_451-1510915933:522808..523955 | TCONS_00066280-exon-scaffold_451-1510915933:522808..523955 | Clytia hemisphaerica | exon |
| TCONS_00066280-exon-scaffold_451-1575043694:522808..523955 | TCONS_00066280-exon-scaffold_451-1575043694:522808..523955 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:522808..523955 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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