TCONS_00066297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066297
Unique NameTCONS_00066297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066297 ID=TCONS_00066297|Name=TCONS_00066297|organism=Clytia hemisphaerica|type=transcript|length=366bp
CAAAAATGTTGAATGCTCTCATAAAAGAGTTGTAAAATACTACAAAAACT
CCAATCTTACATAACTATTGAAAATGACAGCttatttgtttactttataa
aatCCTATTCTTTTCGACTGTCATTTTATGGCCCTTGATTACATAATAAA
CATTTGCAAAGGTAACACAAGACTAAAGAAAATAAACATgaatttatttt
gatgatttgcGATATGGCTGGATGTACAAATATAAAAACATTGCGACAAA
ACGCAAAATCTTTATTATGTAACTTTAACCCTTATCTAATATtctgatgg
cggattggcggccgcccagtctaaagctctaaaggagcgggccaattttt
CATCGGAGAGGAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_451:1039125..1039490

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066297 ID=TCONS_00066297|Name=TCONS_00066297|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_451:1039125..1039490 (Clytia hemisphaerica)
AAATTCCTCTCCGATGaaaaattggcccgctcctttagagctttagactg
ggcggccgccaatccgccatcagaATATTAGATAAGGGTTAAAGTTACAT
AATAAAGATTTTGCGTTTTGTCGCAATGTTTTTATATTTGTACATCCAGC
CATATCgcaaatcatcaaaataaattcATGTTTATTTTCTTTAGTCTTGT
GTTACCTTTGCAAATGTTTATTATGTAATCAAGGGCCATAAAATGACAGT
CGAAAAGAATAGGattttataaagtaaacaaataaGCTGTCATTTTCAAT
AGTTATGTAAGATTGGAGTTTTTGTAGTATTTTACAACTCTTTTATGAGA
GCATTCAACATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041499XLOC_041499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066297-exon-scaffold_451-1491911889:1039125..1039490TCONS_00066297-exon-scaffold_451-1491911889:1039125..1039490Clytia hemisphaericaexon
TCONS_00066297-exon-scaffold_451-1510915933:1039125..1039490TCONS_00066297-exon-scaffold_451-1510915933:1039125..1039490Clytia hemisphaericaexon
TCONS_00066297-exon-scaffold_451-1575043694:1039125..1039490TCONS_00066297-exon-scaffold_451-1575043694:1039125..1039490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1039125..1039490 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.903891	0.440718	0.511716	0.250317	0.914211	1.20404	1.45262	0.815955	4.76057	2.12283	3.43411	3.16043	3.45661	4.52618	4.49102	1.79012	5.59802	4.52068	5.28471	6.53554	5.89905	7.03352	1.03638	2.35556	0	0	4.0281	5.62163	2.75893	2.29984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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