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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066307 ID=TCONS_00066307|Name=TCONS_00066307|organism=Clytia hemisphaerica|type=transcript|length=1128bp
CCTGAAAAGGTACGCTTttcagaaattgaagaaaaaatattgtcaataaG
TGTCATGGAGTGGTCAGTAATTCGAGTCGGAAGAAAAATATTAGGTATAA
GAAAGTGTGATCGAAGGTTGTTCAAATAAGATATTGGGTCAATATATCTA
TTTAACatatttcgtttgaaaagatCGTCAGAATCCTCAGGCAATTcctc
aatttcttcttttgacttgaaaattctGTACCTTTGATTAGATAAGTTAG
TGTTAACGAATGAAATAGCAGGAAAGCATTTTCTAAGCCACAGTTCGGGC
ATTGTTAAGTAAACTGCTTCCTGGATTGAGCATTCTCTATTAGAGTTGTA
AACTTTGGCAATTTTAGACATTTGCTCAAACTGACTGTCATTTGAATCTT
TGGCCTGTTTTAATGTTTCTTGCATTCGGTTGAACACTTAGTATGCGAAC
TTTGTCCAGTTGGAGGTCATAATTACAATGGAAAGGTCGAGAGAAAGATT
CGTGAGGTGAAATCATCAATCGAAAAGTCCTTTTCTGGGCATCGGTTATC
AGTCATCCAATGGGAAACTATCTGCTCAGAAGTCGCTGATTCAATCAACG
ATTTGCCCCTCGCACTCAATGGTATTGTGTCCAATTTCGATACCATGGAC
CTTATCACGCCAAATCGATTGAAGTTAGGACGAAACAATGATCGTAGTCC
GGCTGGTCCGTTAGAAGTGACGAAAAGCTTCTCCAAAATACTCGACTTAA
ACACTGCAATCTACAACGCTTGGTTTGATCAATGGCTCATCAACCATGTA
CCAAAGTTGATGCACCAACGAAAATGGTTCGTCCAAGATCGTGATATCGC
CGTCGACGATATTGTTTTTTTCGCAAAGAATGATTCTGCTATTTCTTCCA
CTTAACAATACGTCAAAGAAACGCATCACGGTAATGATAACAAAATTCGT
AAAGTGACTGTTCTTTACAAAAATGCTAATGAGAAATCGTTTCGTGAAAC
AACACGTGCTGTCAAAGAACCAATAGTATTCATCAAACAGATGAACATGA
TTTGGTGGATGATCTGAATAGTGTGTATTCAGCTACAAAATAACTTTTGC
ATCCTGGTTGGGCCAGTGTAACACGATC Run BLAST on NCBI protein sequence of TCONS_00066307-protein >TCONS_00066307-protein ID=TCONS_00066307-protein|Name=TCONS_00066307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MQETLKQAKDSNDSQFEQMSKIAKVYNSNRECSIQEAVYLTMPELWLRKC
FPAISFVNTNLSNQRYRIFKSKEEIEELPEDSDDLFKRNMLNRYIDPISY
LNNLRSHFLIPNIFLPTRITDHSMTLIDNIFSSISEKRTFS Run BLAST on NCBI transcript from alignment at scaffold_451:1401734..1402861 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066307 ID=TCONS_00066307|Name=TCONS_00066307|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at scaffold_451:1401734..1402861 (Clytia hemisphaerica)
GATCGTGTTACACTGGCCCAACCAGGATGCAAAAGTTATTTTGTAGCTGA
ATACACACTATTCAGATCATCCACCAAATCATGTTCATCTGTTTGATGAA
TACTATTGGTTCTTTGACAGCACGTGTTGTTTCACGAAACGATTTCTCAT
TAGCATTTTTGTAAAGAACAGTCACTTTACGAATTTTGTTATCATTACCG
TGATGCGTTTCTTTGACGTATTGTTAAGTGGAAGAAATAGCAGAATCATT
CTTTGCGAAAAAAACAATATCGTCGACGGCGATATCACGATCTTGGACGA
ACCATTTTCGTTGGTGCATCAACTTTGGTACATGGTTGATGAGCCATTGA
TCAAACCAAGCGTTGTAGATTGCAGTGTTTAAGTCGAGTATTTTGGAGAA
GCTTTTCGTCACTTCTAACGGACCAGCCGGACTACGATCATTGTTTCGTC
CTAACTTCAATCGATTTGGCGTGATAAGGTCCATGGTATCGAAATTGGAC
ACAATACCATTGAGTGCGAGGGGCAAATCGTTGATTGAATCAGCGACTTC
TGAGCAGATAGTTTCCCATTGGATGACTGATAACCGATGCCCAGAAAAGG
ACTTTTCGATTGATGATTTCACCTCACGAATCTTTCTCTCGACCTTTCCA
TTGTAATTATGACCTCCAACTGGACAAAGTTCGCATACTAAGTGTTCAAC
CGAATGCAAGAAACATTAAAACAGGCCAAAGATTCAAATGACAGTCAGTT
TGAGCAAATGTCTAAAATTGCCAAAGTTTACAACTCTAATAGAGAATGCT
CAATCCAGGAAGCAGTTTACTTAACAATGCCCGAACTGTGGCTTAGAAAA
TGCTTTCCTGCTATTTCATTCGTTAACACTAACTTATCTAATCAAAGGTA
CagaattttcaagtcaaaagaagaaattgaggAATTGCCTGAGGATTCTG
ACGatcttttcaaacgaaatatGTTAAATAGATATATTGACCCAATATCT
TATTTGAACAACCTTCGATCACACTTTCTTATACCTAATATTTTTCTTCC
GACTCGAATTACTGACCACTCCATGACACttattgacaatattttttctt
caatttctgaaAAGCGTACCTTTTCAGG Coding sequence (CDS) from alignment at scaffold_451:1401734..1402861 >TCONS_00066307 ID=TCONS_00066307|Name=TCONS_00066307|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_451:1401734..1402861 (Clytia hemisphaerica)
ATGCAAGAAACATTAAAACAGGCCAAAGATTCAAATGACAGTCAGTTTGA
GCAAATGTCTAAAATTGCCAAAGTTTACAACTCTAATAGAGAATGCTCAA
TCCAGGAAGCAGTTTACTTAACAATGCCCGAACTGTGGCTTAGAAAATGC
TTTCCTGCTATTTCATTCGTTAACACTAACTTATCTAATCAAAGGTACag
aattttcaagtcaaaagaagaaattgaggAATTGCCTGAGGATTCTGACG
atcttttcaaacgaaatatGTTAAATAGATATATTGACCCAATATCTTAT
TTGAACAACCTTCGATCACACTTTCTTATACCTAATATTTTTCTTCCGAC
TCGAATTACTGACCACTCCATGACACttattgacaatattttttcttcaa
tttctgaaAAGCGTACCTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066307-exon-scaffold_451-1491911889:1401734..1402861 | TCONS_00066307-exon-scaffold_451-1491911889:1401734..1402861 | Clytia hemisphaerica | exon |
| TCONS_00066307-exon-scaffold_451-1510915933:1401734..1402861 | TCONS_00066307-exon-scaffold_451-1510915933:1401734..1402861 | Clytia hemisphaerica | exon |
| TCONS_00066307-exon-scaffold_451-1575043694:1401734..1402861 | TCONS_00066307-exon-scaffold_451-1575043694:1401734..1402861 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1401734..1402861 . |
Blast
The following BLAST results are available for this feature:
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