TCONS_00066316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066316
Unique NameTCONS_00066316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066316 ID=TCONS_00066316|Name=TCONS_00066316|organism=Clytia hemisphaerica|type=transcript|length=884bp
CCCGTCAAGAACACCGAGGCGAATGGAAATCATTCATCAATACGCAAAGT
TGATTTCTGAAGAACCTTTTCTTTGTCCACGGGACATACTAATTGATATT
CATGATGAGGAAACACCGTTTCAGAAGACAGAATTTGAATTGACAATTCA
AATGATATCCAAACTTGAACAAAACATTCCGAAGCTGAATAATTTGACAC
AAAGACGATTAGAGGTATCGTTATTCTTGTTGCCCACAGCATATTATTGT
TGTGGTACTTTTCTGAAATTGCAACCAAAATTTGCCACTGTCAAATTGTA
TTCTACTGATGGAGAGCATAAAGCCCATTCGTATCATTCAAAGTGTGCGA
AATGCTCCAATACCCATTACTATGGATTTACAGAAAATAAGAAACTTTGT
CAAAAGACTTTCGATTTCAGCAACTGTGAGGTATTGTTGTTCAATTCTgg
cattgcattcaccagaaaaTTGTTAGAAATGACAGACAATATGATCTGCA
TCGGCGGAGTGTCATTTGAGAAAGCTGCTGATATAATCAGTACAACTGGA
CATATAATGGACAGGATTAATCCCGATAGGTTGGAAACAGCGTGGTATAT
TTATCGTATTATTGAATACCAGATAACTTTATAATGGCCGAGAAAGAAAG
TATCAAAGGAATTAGATGTTGAAGCGCTGTGTGGAATGGTCTATGAAGAA
ATCAAATCGGGAGTGGATTCAAAGTGGCTGAGACATATATGTACAGAGCC
TGGGTAAAGAAAGATTTATTGTAATCGATGGCAACGAAAAACTGCATCGA
CTGATATGTGATGCACCCAAAACGCGTGTTTTAGGTTGCGGTGGAGAGGT
GAACTCATATGAGTTGTGCATACAAAATACCCAG
Run BLAST on NCBI

protein sequence of TCONS_00066316-protein

>TCONS_00066316-protein ID=TCONS_00066316-protein|Name=TCONS_00066316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
PSRTPRRMEIIHQYAKLISEEPFLCPRDILIDIHDEETPFQKTEFELTIQ
MISKLEQNIPKLNNLTQRRLEVSLFLLPTAYYCCGTFLKLQPKFATVKLY
STDGEHKAHSYHSKCAKCSNTHYYGFTENKKLCQKTFDFSNCEVLLFNSG
IAFTRKLLEMTDNMICIGGVSFEKAADIISTTGHIMDRINPDRLETAWYI
YRIIEYQITL
Run BLAST on NCBI

transcript from alignment at scaffold_451:1442528..1443411

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066316 ID=TCONS_00066316|Name=TCONS_00066316|organism=Clytia hemisphaerica|type=transcript|length=884bp|location=Sequence derived from alignment at scaffold_451:1442528..1443411 (Clytia hemisphaerica)
CTGGGTATTTTGTATGCACAACTCATATGAGTTCACCTCTCCACCGCAAC
CTAAAACACGCGTTTTGGGTGCATCACATATCAGTCGATGCAGTTTTTCG
TTGCCATCGATTACAATAAATCTTTCTTTACCCAGGCTCTGTACATATAT
GTCTCAGCCACTTTGAATCCACTCCCGATTTGATTTCTTCATAGACCATT
CCACACAGCGCTTCAACATCTAATTCCTTTGATACTTTCTTTCTCGGCCA
TTATAAAGTTATCTGGTATTCAATAATACGATAAATATACCACGCTGTTT
CCAACCTATCGGGATTAATCCTGTCCATTATATGTCCAGTTGTACTGATT
ATATCAGCAGCTTTCTCAAATGACACTCCGCCGATGCAGATCATATTGTC
TGTCATTTCTAACAAttttctggtgaatgcaatgccAGAATTGAACAACA
ATACCTCACAGTTGCTGAAATCGAAAGTCTTTTGACAAAGTTTCTTATTT
TCTGTAAATCCATAGTAATGGGTATTGGAGCATTTCGCACACTTTGAATG
ATACGAATGGGCTTTATGCTCTCCATCAGTAGAATACAATTTGACAGTGG
CAAATTTTGGTTGCAATTTCAGAAAAGTACCACAACAATAATATGCTGTG
GGCAACAAGAATAACGATACCTCTAATCGTCTTTGTGTCAAATTATTCAG
CTTCGGAATGTTTTGTTCAAGTTTGGATATCATTTGAATTGTCAATTCAA
ATTCTGTCTTCTGAAACGGTGTTTCCTCATCATGAATATCAATTAGTATG
TCCCGTGGACAAAGAAAAGGTTCTTCAGAAATCAACTTTGCGTATTGATG
AATGATTTCCATTCGCCTCGGTGTTCTTGACGGG

Coding sequence (CDS) from alignment at scaffold_451:1442528..1443411

>TCONS_00066316 ID=TCONS_00066316|Name=TCONS_00066316|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_451:1442528..1443411 (Clytia hemisphaerica)
TTATAAAGTTATCTGGTATTCAATAATACGATAAATATACCACGCTGTTT
CCAACCTATCGGGATTAATCCTGTCCATTATATGTCCAGTTGTACTGATT
ATATCAGCAGCTTTCTCAAATGACACTCCGCCGATGCAGATCATATTGTC
TGTCATTTCTAACAAttttctggtgaatgcaatgccAGAATTGAACAACA
ATACCTCACAGTTGCTGAAATCGAAAGTCTTTTGACAAAGTTTCTTATTT
TCTGTAAATCCATAGTAATGGGTATTGGAGCATTTCGCACACTTTGAATG
ATACGAATGGGCTTTATGCTCTCCATCAGTAGAATACAATTTGACAGTGG
CAAATTTTGGTTGCAATTTCAGAAAAGTACCACAACAATAATATGCTGTG
GGCAACAAGAATAACGATACCTCTAATCGTCTTTGTGTCAAATTATTCAG
CTTCGGAATGTTTTGTTCAAGTTTGGATATCATTTGAATTGTCAATTCAA
ATTCTGTCTTCTGAAACGGTGTTTCCTCATCATGAATATCAATTAGTATG
TCCCGTGGACAAAGAAAAGGTTCTTCAGAAATCAACTTTGCGTATTGATG
AATGATTTCCATTCGCCTCGGTGTTCTTGACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041516XLOC_041516Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066316-proteinTCONS_00066316-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066316-exon-scaffold_451-1491911889:1442528..1443411TCONS_00066316-exon-scaffold_451-1491911889:1442528..1443411Clytia hemisphaericaexon
TCONS_00066316-exon-scaffold_451-1510915933:1442528..1443411TCONS_00066316-exon-scaffold_451-1510915933:1442528..1443411Clytia hemisphaericaexon
TCONS_00066316-exon-scaffold_451-1575043694:1442528..1443411TCONS_00066316-exon-scaffold_451-1575043694:1442528..1443411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1442528..1443411 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0700434	0.153762	0.178532	0.174666	0	0.11202	0.202721	0.210936	0.0520544	0.438892	0.288598	0	0.104867	0.23297	0.112275	0	0.157825	0.0669372	0	0.116932	0	0.12308	0	0	3.20795	2.06217	0	0.0769147	0.0583371	0.0594363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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